RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 DEFB132Q7Z7B7 95 aa20.38■□□□□ 0.85
SS18-216ENST00000580751 NFATC2IPQ8NCF5 419 aa20.38■□□□□ 0.85
SS18-216ENST00000580751 RRP7AQ9Y3A4 280 aaKnown RBP20.38■□□□□ 0.85
SS18-216ENST00000580751 NEUROD2Q15784 382 aa20.37■□□□□ 0.85
SS18-216ENST00000580751 SMARCC1Q92922 1105 aaPredicted RBP20.37■□□□□ 0.85
SS18-216ENST00000580751 EN1Q05925 392 aaPredicted RBP20.36■□□□□ 0.85
SS18-216ENST00000580751 SIPA1L3O60292 1781 aaPredicted RBP20.36■□□□□ 0.85
SS18-216ENST00000580751 PALLDQ8WX93 1383 aa20.35■□□□□ 0.85
SS18-216ENST00000580751 DCTN1Q14203 1278 aa20.35■□□□□ 0.85
SS18-216ENST00000580751 CAMKK2Q96RR4 588 aa20.35■□□□□ 0.85
SS18-216ENST00000580751 NGEFQ8N5V2 710 aa20.34■□□□□ 0.85
SS18-216ENST00000580751 LY75O60449 1722 aa20.33■□□□□ 0.85
SS18-216ENST00000580751 RREB1Q92766 1687 aa20.33■□□□□ 0.85
SS18-216ENST00000580751 NCBP3Q53F19 620 aaKnown RBP20.33■□□□□ 0.85
SS18-216ENST00000580751 ATG3Q9NT62 314 aa20.33■□□□□ 0.85
SS18-216ENST00000580751 PAPPAQ13219 1627 aa20.33■□□□□ 0.84
SS18-216ENST00000580751 EZH2Q15910 746 aaKnown RBP20.32■□□□□ 0.84
SS18-216ENST00000580751 ASAP1Q9ULH1 1129 aa20.32■□□□□ 0.84
SS18-216ENST00000580751 TRIM35Q9UPQ4 493 aa20.32■□□□□ 0.84
SS18-216ENST00000580751 TXNRD1Q16881 649 aa20.31■□□□□ 0.84
SS18-216ENST00000580751 SLC27A3Q5K4L6 730 aa20.31■□□□□ 0.84
SS18-216ENST00000580751 THUMPD2Q9BTF0 503 aaKnown RBP20.31■□□□□ 0.84
SS18-216ENST00000580751 CCDC27Q2M243 656 aa20.3■□□□□ 0.84
SS18-216ENST00000580751 TTC5Q8N0Z6 440 aa20.3■□□□□ 0.84
SS18-216ENST00000580751 BTBD11A6QL63 1104 aa20.29■□□□□ 0.84
SS18-216ENST00000580751 HMGB2P26583 209 aaKnown RBP20.29■□□□□ 0.84
SS18-216ENST00000580751 CALD1Q05682 793 aaKnown RBP20.29■□□□□ 0.84
SS18-216ENST00000580751 TAF7Q15545 349 aaPredicted RBP20.29■□□□□ 0.84
SS18-216ENST00000580751 CCNL1Q9UK58 526 aaPredicted RBP20.28■□□□□ 0.84
SS18-216ENST00000580751 UBR2Q8IWV8 1755 aa20.28■□□□□ 0.84
SS18-216ENST00000580751 NUP188Q5SRE5 1749 aa20.27■□□□□ 0.84
SS18-216ENST00000580751 ZNF831Q5JPB2 1677 aa20.27■□□□□ 0.84
SS18-216ENST00000580751 LOC102724428A0A0B4J2F2 783 aa20.27■□□□□ 0.84
SS18-216ENST00000580751 SIK1P57059 783 aa20.27■□□□□ 0.84
SS18-216ENST00000580751 SLC39A6Q13433 755 aa20.27■□□□□ 0.84
SS18-216ENST00000580751 ZNF790Q6PG37 636 aa20.27■□□□□ 0.84
SS18-216ENST00000580751 PROM2Q8N271 834 aa20.27■□□□□ 0.84
SS18-216ENST00000580751 KCPQ6ZWJ8 1503 aa20.27■□□□□ 0.83
SS18-216ENST00000580751 HNRNPUQ00839 825 aaKnown RBP eCLIP20.26■□□□□ 0.83
SS18-216ENST00000580751 YTHDC1Q96MU7 727 aaKnown RBP20.26■□□□□ 0.83
SS18-216ENST00000580751 BABAM1Q9NWV8 329 aa20.26■□□□□ 0.83
SS18-216ENST00000580751 RBM42Q9BTD8 480 aaKnown RBP20.25■□□□□ 0.83
SS18-216ENST00000580751 KDM3BQ7LBC6 1761 aa20.25■□□□□ 0.83
SS18-216ENST00000580751 ZBED9Q6R2W3 1325 aa20.25■□□□□ 0.83
SS18-216ENST00000580751 CICQ96RK0 1608 aaPredicted RBP20.24■□□□□ 0.83
SS18-216ENST00000580751 PTCD1O75127 700 aaKnown RBP20.24■□□□□ 0.83
SS18-216ENST00000580751 WWC1Q8IX03 1113 aa20.24■□□□□ 0.83
SS18-216ENST00000580751 C5P01031 1676 aa20.23■□□□□ 0.83
SS18-216ENST00000580751 SENP3-EIF4A1A0A087X0R7 540 aa20.23■□□□□ 0.83
SS18-216ENST00000580751 ATP6V1AP38606 617 aa20.23■□□□□ 0.83
SS18-216ENST00000580751 LRRC4BQ9NT99 713 aa20.23■□□□□ 0.83
SS18-216ENST00000580751 TSPYL4Q9UJ04 414 aa20.23■□□□□ 0.83
SS18-216ENST00000580751 CENPBP07199 599 aaPredicted RBP20.22■□□□□ 0.83
SS18-216ENST00000580751 VSIG10Q8N0Z9 540 aa20.22■□□□□ 0.83
SS18-216ENST00000580751 FMNL2Q96PY5 1086 aa20.22■□□□□ 0.83
SS18-216ENST00000580751 SALL2Q9Y467 1007 aaPredicted RBP20.22■□□□□ 0.83
SS18-216ENST00000580751 NBPF14Q5TI25 921 aa20.21■□□□□ 0.83
SS18-216ENST00000580751 ZNF496Q96IT1 587 aaPredicted RBP20.21■□□□□ 0.83
SS18-216ENST00000580751 CFAP44Q96MT7 982 aa20.21■□□□□ 0.83
SS18-216ENST00000580751 IFT57Q9NWB7 429 aa20.21■□□□□ 0.83
SS18-216ENST00000580751 MIS18AQ9NYP9 233 aa20.21■□□□□ 0.83
SS18-216ENST00000580751 HEG1Q9ULI3 1381 aa20.21■□□□□ 0.83
SS18-216ENST00000580751 TAF1LQ8IZX4 1826 aa20.2■□□□□ 0.82
SS18-216ENST00000580751 CHL1O00533 1208 aa20.2■□□□□ 0.82
SS18-216ENST00000580751 KCNQ4P56696 695 aa20.2■□□□□ 0.82
SS18-216ENST00000580751 GNAI1P63096 354 aa20.2■□□□□ 0.82
SS18-216ENST00000580751 SLC4A9Q96Q91 983 aa20.2■□□□□ 0.82
SS18-216ENST00000580751 IL16Q14005 1332 aa20.2■□□□□ 0.82
SS18-216ENST00000580751 TJP1Q07157 1748 aa20.19■□□□□ 0.82
SS18-216ENST00000580751 KCNQ3O43525 872 aa20.19■□□□□ 0.82
SS18-216ENST00000580751 WDR63Q8IWG1 891 aa20.19■□□□□ 0.82
SS18-216ENST00000580751 LAS1LQ9Y4W2 734 aaKnown RBP20.19■□□□□ 0.82
SS18-216ENST00000580751 COL5A3P25940 1745 aaPredicted RBP20.19■□□□□ 0.82
SS18-216ENST00000580751 ITPK1Q13572 414 aa20.18■□□□□ 0.82
SS18-216ENST00000580751 STK32BQ9NY57 414 aa20.18■□□□□ 0.82
SS18-216ENST00000580751 C4BP0C0L5 1744 aa20.18■□□□□ 0.82
SS18-216ENST00000580751 ZNF853P0CG23 659 aa20.17■□□□□ 0.82
SS18-216ENST00000580751 TEX13AQ9BXU3 409 aaPredicted RBP20.17■□□□□ 0.82
SS18-216ENST00000580751 EIF4A1P60842 406 aaKnown RBP20.16■□□□□ 0.82
SS18-216ENST00000580751 LINC00116Q8NCU8 138 aa20.16■□□□□ 0.82
SS18-216ENST00000580751 ANO8Q9HCE9 1232 aaPredicted RBP20.16■□□□□ 0.82
SS18-216ENST00000580751 ZNF521Q96K83 1311 aa20.16■□□□□ 0.82
SS18-216ENST00000580751 SNRPA1P09661 255 aaKnown RBP20.15■□□□□ 0.82
SS18-216ENST00000580751 DNAJC10Q8IXB1 793 aa20.15■□□□□ 0.82
SS18-216ENST00000580751 MBIPQ9NS73 344 aa20.15■□□□□ 0.82
SS18-216ENST00000580751 CNTNAP4Q9C0A0 1308 aa20.15■□□□□ 0.82
SS18-216ENST00000580751 STARD3NLO95772 234 aa20.14■□□□□ 0.81
SS18-216ENST00000580751 SLC15A2Q16348 729 aa20.14■□□□□ 0.81
SS18-216ENST00000580751 AKT1S1Q96B36 256 aa20.14■□□□□ 0.81
SS18-216ENST00000580751 AK7Q96M32 723 aa20.14■□□□□ 0.81
SS18-216ENST00000580751 ZNF827Q17R98 1081 aa20.13■□□□□ 0.81
SS18-216ENST00000580751 RC3H1Q5TC82 1133 aaKnown RBP20.13■□□□□ 0.81
SS18-216ENST00000580751 LAMB4A4D0S4 1761 aa20.13■□□□□ 0.81
SS18-216ENST00000580751 QSER1Q2KHR3 1735 aa20.11■□□□□ 0.81
SS18-216ENST00000580751 GIGYF1O75420 1035 aaPredicted RBP20.11■□□□□ 0.81
SS18-216ENST00000580751 CYP19A1P11511 503 aaPredicted RBP20.11■□□□□ 0.81
SS18-216ENST00000580751 CRKLP46109 303 aaKnown RBP20.11■□□□□ 0.81
SS18-216ENST00000580751 MYH16Q9H6N6 1097 aa20.11■□□□□ 0.81
SS18-216ENST00000580751 TFCP2L1Q9NZI6 479 aa20.11■□□□□ 0.81
SS18-216ENST00000580751 GOLGA2Q08379 1002 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms