RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 RXRBP28702 533 aa13.93□□□□□ -0.18
SS18-213ENST00000579640 CABP4P57796 275 aa13.93□□□□□ -0.18
SS18-213ENST00000579640 TSPYL4Q9UJ04 414 aa13.93□□□□□ -0.18
SS18-213ENST00000579640 TSR2Q969E8 191 aaKnown RBP13.92□□□□□ -0.18
SS18-213ENST00000579640 RGS17Q9UGC6 210 aaPredicted RBP13.92□□□□□ -0.18
SS18-213ENST00000579640 TOGARAM1Q9Y4F4 1720 aa13.92□□□□□ -0.18
SS18-213ENST00000579640 BTBD11A6QL63 1104 aa13.92□□□□□ -0.18
SS18-213ENST00000579640 CT47B1P0C2W7 299 aaPredicted RBP13.92□□□□□ -0.18
SS18-213ENST00000579640 KDM3BQ7LBC6 1761 aa13.92□□□□□ -0.18
SS18-213ENST00000579640 BCL9O00512 1426 aa13.91□□□□□ -0.18
SS18-213ENST00000579640 NFATC2IPQ8NCF5 419 aa13.91□□□□□ -0.18
SS18-213ENST00000579640 DOT1LQ8TEK3 1739 aa13.9□□□□□ -0.18
SS18-213ENST00000579640 TMOD3Q9NYL9 352 aa13.9□□□□□ -0.18
SS18-213ENST00000579640 ITGB4P16144 1822 aa13.89□□□□□ -0.19
SS18-213ENST00000579640 EXOSC9Q06265 439 aaKnown RBP13.89□□□□□ -0.19
SS18-213ENST00000579640 MIS18AQ9NYP9 233 aa13.89□□□□□ -0.19
SS18-213ENST00000579640 SOS1Q07889 1333 aaPredicted RBP13.88□□□□□ -0.19
SS18-213ENST00000579640 POTEAQ6S8J7 498 aa13.88□□□□□ -0.19
SS18-213ENST00000579640 ZNF790Q6PG37 636 aa13.87□□□□□ -0.19
SS18-213ENST00000579640 KRT27Q7Z3Y8 459 aa13.87□□□□□ -0.19
SS18-213ENST00000579640 ZNF428Q96B54 188 aa13.87□□□□□ -0.19
SS18-213ENST00000579640 BRWD3Q6RI45 1802 aa13.87□□□□□ -0.19
SS18-213ENST00000579640 PAPPAQ13219 1627 aa13.87□□□□□ -0.19
SS18-213ENST00000579640 TTC5Q8N0Z6 440 aa13.87□□□□□ -0.19
SS18-213ENST00000579640 EIF4A1P60842 406 aaKnown RBP13.86□□□□□ -0.19
SS18-213ENST00000579640 PIGBQ92521 554 aa13.86□□□□□ -0.19
SS18-213ENST00000579640 RCAN3Q9UKA8 241 aa13.86□□□□□ -0.19
SS18-213ENST00000579640 RGS12O14924 1447 aa13.86□□□□□ -0.19
SS18-213ENST00000579640 HOXB7P09629 217 aa13.85□□□□□ -0.19
SS18-213ENST00000579640 PRIM1P49642 420 aaKnown RBP13.85□□□□□ -0.19
SS18-213ENST00000579640 TWISTNBQ3B726 338 aaPredicted RBP13.85□□□□□ -0.19
SS18-213ENST00000579640 POTEDQ86YR6 584 aa13.85□□□□□ -0.19
SS18-213ENST00000579640 CHMP4AQ9BY43 222 aa13.85□□□□□ -0.19
SS18-213ENST00000579640 FAM196AQ6ZSG2 479 aa13.85□□□□□ -0.19
SS18-213ENST00000579640 C8orf58Q8NAV2 365 aa13.85□□□□□ -0.19
SS18-213ENST00000579640 SYTL4Q96C24 671 aaPredicted RBP13.85□□□□□ -0.19
SS18-213ENST00000579640 KAT6BQ8WYB5 2073 aa13.84□□□□□ -0.19
SS18-213ENST00000579640 HEG1Q9ULI3 1381 aa13.84□□□□□ -0.19
SS18-213ENST00000579640 NHSQ6T4R5 1651 aa13.84□□□□□ -0.19
SS18-213ENST00000579640 UBR2Q8IWV8 1755 aa13.84□□□□□ -0.19
SS18-213ENST00000579640 KCNQ3O43525 872 aa13.84□□□□□ -0.19
SS18-213ENST00000579640 VAMP4O75379 141 aa13.84□□□□□ -0.19
SS18-213ENST00000579640 SLC39A6Q13433 755 aa13.84□□□□□ -0.19
SS18-213ENST00000579640 ACSBG1Q96GR2 724 aa13.84□□□□□ -0.19
SS18-213ENST00000579640 FMNL2Q96PY5 1086 aa13.84□□□□□ -0.19
SS18-213ENST00000579640 SBF2Q86WG5 1849 aa13.83□□□□□ -0.2
SS18-213ENST00000579640 ALDH1L2Q3SY69 923 aa13.83□□□□□ -0.2
SS18-213ENST00000579640 TSPYL6Q8N831 410 aa13.83□□□□□ -0.2
SS18-213ENST00000579640 KCPQ6ZWJ8 1503 aa13.82□□□□□ -0.2
SS18-213ENST00000579640 KRT24Q2M2I5 525 aa13.82□□□□□ -0.2
SS18-213ENST00000579640 SMARCC1Q92922 1105 aaPredicted RBP13.82□□□□□ -0.2
SS18-213ENST00000579640 ATG3Q9NT62 314 aa13.82□□□□□ -0.2
SS18-213ENST00000579640 ELL2O00472 640 aaPredicted RBP13.81□□□□□ -0.2
SS18-213ENST00000579640 GIGYF1O75420 1035 aaPredicted RBP13.81□□□□□ -0.2
SS18-213ENST00000579640 RARSP54136 660 aaKnown RBP13.81□□□□□ -0.2
SS18-213ENST00000579640 ZNF496Q96IT1 587 aaPredicted RBP13.81□□□□□ -0.2
SS18-213ENST00000579640 SNRPA1P09661 255 aaKnown RBP13.8□□□□□ -0.2
SS18-213ENST00000579640 FAM182BQ5T319 152 aa13.8□□□□□ -0.2
SS18-213ENST00000579640 VSIG10Q8N0Z9 540 aa13.8□□□□□ -0.2
SS18-213ENST00000579640 ASAP1Q9ULH1 1129 aa13.8□□□□□ -0.2
SS18-213ENST00000579640 KCNQ2O43526 872 aa13.8□□□□□ -0.2
SS18-213ENST00000579640 CCDC30Q5VVM6 783 aa13.79□□□□□ -0.2
SS18-213ENST00000579640 BCL11BQ9C0K0 894 aaPredicted RBP13.79□□□□□ -0.2
SS18-213ENST00000579640 BTAF1O14981 1849 aa13.79□□□□□ -0.2
SS18-213ENST00000579640 LAMB4A4D0S4 1761 aa13.79□□□□□ -0.2
SS18-213ENST00000579640 BRPF1P55201 1214 aaPredicted RBP13.78□□□□□ -0.2
SS18-213ENST00000579640 HDGFL1Q5TGJ6 251 aa13.78□□□□□ -0.2
SS18-213ENST00000579640 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.78□□□□□ -0.2
SS18-213ENST00000579640 SSH1Q8WYL5 1049 aa13.78□□□□□ -0.2
SS18-213ENST00000579640 TEX13AQ9BXU3 409 aaPredicted RBP13.78□□□□□ -0.2
SS18-213ENST00000579640 SMC4Q9NTJ3 1288 aa13.78□□□□□ -0.2
SS18-213ENST00000579640 STK31Q9BXU1 1019 aa13.78□□□□□ -0.2
SS18-213ENST00000579640 SUPT16HQ9Y5B9 1047 aaKnown RBP13.78□□□□□ -0.2
SS18-213ENST00000579640 RNF123Q5XPI4 1314 aa13.77□□□□□ -0.2
SS18-213ENST00000579640 CACNA1FO60840 1977 aa13.77□□□□□ -0.2
SS18-213ENST00000579640 C5P01031 1676 aa13.77□□□□□ -0.2
SS18-213ENST00000579640 PALLDQ8WX93 1383 aa13.77□□□□□ -0.2
SS18-213ENST00000579640 PTCD1O75127 700 aaKnown RBP13.77□□□□□ -0.21
SS18-213ENST00000579640 ZNF831Q5JPB2 1677 aa13.77□□□□□ -0.21
SS18-213ENST00000579640 CICQ96RK0 1608 aaPredicted RBP13.76□□□□□ -0.21
SS18-213ENST00000579640 BCAR3O75815 825 aa13.76□□□□□ -0.21
SS18-213ENST00000579640 RBM42Q9BTD8 480 aaKnown RBP13.76□□□□□ -0.21
SS18-213ENST00000579640 KIF16BQ96L93 1317 aa13.76□□□□□ -0.21
SS18-213ENST00000579640 EIF2S2P20042 333 aaKnown RBP13.76□□□□□ -0.21
SS18-213ENST00000579640 RRP1P56182 461 aaKnown RBP13.76□□□□□ -0.21
SS18-213ENST00000579640 MRPL50Q8N5N7 158 aaKnown RBP13.76□□□□□ -0.21
SS18-213ENST00000579640 ERBB4Q15303 1308 aa13.75□□□□□ -0.21
SS18-213ENST00000579640 BCL2L13Q9BXK5 485 aa13.75□□□□□ -0.21
SS18-213ENST00000579640 LOC102724428A0A0B4J2F2 783 aa13.74□□□□□ -0.21
SS18-213ENST00000579640 PRAMEF22A3QJZ6 481 aa13.74□□□□□ -0.21
SS18-213ENST00000579640 IPO8O15397 1037 aaKnown RBP13.74□□□□□ -0.21
SS18-213ENST00000579640 SIK1P57059 783 aa13.74□□□□□ -0.21
SS18-213ENST00000579640 DBF4Q9UBU7 674 aaPredicted RBP13.74□□□□□ -0.21
SS18-213ENST00000579640 USP16Q9Y5T5 823 aa13.74□□□□□ -0.21
SS18-213ENST00000579640 TRIM37O94972 964 aa13.74□□□□□ -0.21
SS18-213ENST00000579640 STARD3NLO95772 234 aa13.74□□□□□ -0.21
SS18-213ENST00000579640 SLC4A2P04920 1241 aa13.74□□□□□ -0.21
SS18-213ENST00000579640 PTF1AQ7RTS3 328 aa13.74□□□□□ -0.21
SS18-213ENST00000579640 LY75O60449 1722 aa13.73□□□□□ -0.21
SS18-213ENST00000579640 TJP1Q07157 1748 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms