RNA–Protein interactions for RNA: ENST00000578917.1

TRAF4-213, Transcript of TNF receptor associated factor 4, humanhuman

TSL 4

Gene TRAF4, Length 484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-213ENST00000578917 WDR43Q15061 677 aaKnown RBP eCLIP8.69□□□□□ -1.02
TRAF4-213ENST00000578917 KLHL34Q8N239 644 aa8.69□□□□□ -1.02
TRAF4-213ENST00000578917 RSPH6AQ9H0K4 717 aa8.69□□□□□ -1.02
TRAF4-213ENST00000578917 MAPK8IP3Q9UPT6 1336 aa8.69□□□□□ -1.02
TRAF4-213ENST00000578917 WNK3Q9BYP7 1800 aa8.68□□□□□ -1.02
TRAF4-213ENST00000578917 GNPATO15228 680 aa8.68□□□□□ -1.02
TRAF4-213ENST00000578917 SLC39A6Q13433 755 aa8.68□□□□□ -1.02
TRAF4-213ENST00000578917 COL23A1Q86Y22 540 aaPredicted RBP8.68□□□□□ -1.02
TRAF4-213ENST00000578917 MYBBP1AQ9BQG0 1328 aaKnown RBP8.68□□□□□ -1.02
TRAF4-213ENST00000578917 NHSQ6T4R5 1651 aa8.68□□□□□ -1.02
TRAF4-213ENST00000578917 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.67□□□□□ -1.02
TRAF4-213ENST00000578917 ITPK1Q13572 414 aa8.67□□□□□ -1.02
TRAF4-213ENST00000578917 TRAPPC3LQ5T215 181 aa8.67□□□□□ -1.02
TRAF4-213ENST00000578917 MSL1Q68DK7 614 aa8.67□□□□□ -1.02
TRAF4-213ENST00000578917 PNPLA7Q6ZV29 1317 aa8.67□□□□□ -1.02
TRAF4-213ENST00000578917 NPM2Q86SE8 214 aaKnown RBP8.67□□□□□ -1.02
TRAF4-213ENST00000578917 LINC00116Q8NCU8 138 aa8.67□□□□□ -1.02
TRAF4-213ENST00000578917 IL17REQ8NFR9 667 aa8.67□□□□□ -1.02
TRAF4-213ENST00000578917 ARXQ96QS3 562 aa8.67□□□□□ -1.02
TRAF4-213ENST00000578917 MAP3K5Q99683 1374 aa8.67□□□□□ -1.02
TRAF4-213ENST00000578917 RTCBQ9Y3I0 505 aaKnown RBP8.67□□□□□ -1.02
TRAF4-213ENST00000578917 BTBD11A6QL63 1104 aa8.66□□□□□ -1.02
TRAF4-213ENST00000578917 ANP32CO43423 234 aa8.66□□□□□ -1.02
TRAF4-213ENST00000578917 RFC4P35249 363 aa8.66□□□□□ -1.02
TRAF4-213ENST00000578917 SMIM5Q71RC9 77 aa8.66□□□□□ -1.02
TRAF4-213ENST00000578917 MCM10Q7L590 875 aa8.66□□□□□ -1.02
TRAF4-213ENST00000578917 PRKRIP1Q9H875 184 aaPredicted RBP8.66□□□□□ -1.02
TRAF4-213ENST00000578917 SBF2Q86WG5 1849 aa8.66□□□□□ -1.02
TRAF4-213ENST00000578917 KDM6AO15550 1401 aaPredicted RBP8.65□□□□□ -1.02
TRAF4-213ENST00000578917 HTATSF1O43719 755 aaKnown RBP8.65□□□□□ -1.02
TRAF4-213ENST00000578917 STARD3NLO95772 234 aa8.65□□□□□ -1.02
TRAF4-213ENST00000578917 SSFA2P28290 1259 aa8.65□□□□□ -1.02
TRAF4-213ENST00000578917 NEUROD2Q15784 382 aa8.65□□□□□ -1.02
TRAF4-213ENST00000578917 RC3H1Q5TC82 1133 aaKnown RBP8.65□□□□□ -1.02
TRAF4-213ENST00000578917 BTAF1O14981 1849 aa8.65□□□□□ -1.02
TRAF4-213ENST00000578917 PTGER2P43116 358 aa8.64□□□□□ -1.03
TRAF4-213ENST00000578917 CRKLP46109 303 aaKnown RBP8.64□□□□□ -1.03
TRAF4-213ENST00000578917 DCTN1Q14203 1278 aa8.64□□□□□ -1.03
TRAF4-213ENST00000578917 ZNF790Q6PG37 636 aa8.64□□□□□ -1.03
TRAF4-213ENST00000578917 DNAJC10Q8IXB1 793 aa8.64□□□□□ -1.03
TRAF4-213ENST00000578917 SLC4A9Q96Q91 983 aa8.64□□□□□ -1.03
TRAF4-213ENST00000578917 TEX13AQ9BXU3 409 aaPredicted RBP8.64□□□□□ -1.03
TRAF4-213ENST00000578917 FHDC1Q9C0D6 1143 aaPredicted RBP8.64□□□□□ -1.03
TRAF4-213ENST00000578917 COL3A1P02461 1466 aaPredicted RBP8.64□□□□□ -1.03
TRAF4-213ENST00000578917 DOT1LQ8TEK3 1739 aa8.63□□□□□ -1.03
TRAF4-213ENST00000578917 ZPR1O75312 459 aa8.63□□□□□ -1.03
TRAF4-213ENST00000578917 RPS6KA4O75676 772 aa8.63□□□□□ -1.03
TRAF4-213ENST00000578917 RIPK4P57078 832 aa8.63□□□□□ -1.03
TRAF4-213ENST00000578917 TAF7Q15545 349 aaPredicted RBP8.63□□□□□ -1.03
TRAF4-213ENST00000578917 NFE2L2Q16236 605 aa8.63□□□□□ -1.03
TRAF4-213ENST00000578917 CCDC146Q8IYE0 955 aa8.63□□□□□ -1.03
TRAF4-213ENST00000578917 PELP1Q8IZL8 1130 aaKnown RBP8.63□□□□□ -1.03
TRAF4-213ENST00000578917 ARHGEF1Q92888 912 aaKnown RBP8.63□□□□□ -1.03
TRAF4-213ENST00000578917 FMNL2Q96PY5 1086 aa8.63□□□□□ -1.03
TRAF4-213ENST00000578917 SYT17Q9BSW7 474 aa8.63□□□□□ -1.03
TRAF4-213ENST00000578917 CCDC87Q9NVE4 849 aa8.63□□□□□ -1.03
TRAF4-213ENST00000578917 ADAMTS8Q9UP79 889 aa8.63□□□□□ -1.03
TRAF4-213ENST00000578917 ZNF330Q9Y3S2 320 aaPredicted RBP8.63□□□□□ -1.03
TRAF4-213ENST00000578917 NUP188Q5SRE5 1749 aa8.63□□□□□ -1.03
TRAF4-213ENST00000578917 PKD1L3Q7Z443 1732 aa8.63□□□□□ -1.03
TRAF4-213ENST00000578917 RREB1Q92766 1687 aa8.62□□□□□ -1.03
TRAF4-213ENST00000578917 ADRA2BP18089 450 aa8.62□□□□□ -1.03
TRAF4-213ENST00000578917 CANXP27824 592 aaKnown RBP8.62□□□□□ -1.03
TRAF4-213ENST00000578917 VSIG10Q8N0Z9 540 aa8.62□□□□□ -1.03
TRAF4-213ENST00000578917 NLGN1Q8N2Q7 840 aa8.62□□□□□ -1.03
TRAF4-213ENST00000578917 PNISRQ8TF01 805 aaKnown RBP8.62□□□□□ -1.03
TRAF4-213ENST00000578917 ZNF496Q96IT1 587 aaPredicted RBP8.62□□□□□ -1.03
TRAF4-213ENST00000578917 PLEKHF1Q96S99 279 aa8.62□□□□□ -1.03
TRAF4-213ENST00000578917 MIS18AQ9NYP9 233 aa8.62□□□□□ -1.03
TRAF4-213ENST00000578917 RGPD3A6NKT7 1758 aaPredicted RBP8.61□□□□□ -1.03
TRAF4-213ENST00000578917 RGPD4Q7Z3J3 1758 aa8.61□□□□□ -1.03
TRAF4-213ENST00000578917 CNTNAP4Q9C0A0 1308 aa8.61□□□□□ -1.03
TRAF4-213ENST00000578917 CYP19A1P11511 503 aaPredicted RBP8.61□□□□□ -1.03
TRAF4-213ENST00000578917 LMOD3Q0VAK6 560 aa8.61□□□□□ -1.03
TRAF4-213ENST00000578917 GPR162Q16538 588 aa8.61□□□□□ -1.03
TRAF4-213ENST00000578917 AMIGO3Q86WK7 504 aa8.61□□□□□ -1.03
TRAF4-213ENST00000578917 RUNDC1Q96C34 613 aa8.61□□□□□ -1.03
TRAF4-213ENST00000578917 RRP7AQ9Y3A4 280 aaKnown RBP8.61□□□□□ -1.03
TRAF4-213ENST00000578917 SHANK3Q9BYB0 1731 aa8.6□□□□□ -1.03
TRAF4-213ENST00000578917 KCNQ3O43525 872 aa8.6□□□□□ -1.03
TRAF4-213ENST00000578917 MMP10P09238 476 aa8.6□□□□□ -1.03
TRAF4-213ENST00000578917 SNRPA1P09661 255 aaKnown RBP8.6□□□□□ -1.03
TRAF4-213ENST00000578917 TMPOP42166 694 aaKnown RBP8.6□□□□□ -1.03
TRAF4-213ENST00000578917 INTS5Q6P9B9 1019 aaKnown RBP8.6□□□□□ -1.03
TRAF4-213ENST00000578917 SGIP1Q9BQI5 828 aa8.6□□□□□ -1.03
TRAF4-213ENST00000578917 THUMPD2Q9BTF0 503 aaKnown RBP8.6□□□□□ -1.03
TRAF4-213ENST00000578917 LAS1LQ9Y4W2 734 aaKnown RBP8.6□□□□□ -1.03
TRAF4-213ENST00000578917 PARP3Q9Y6F1 533 aa8.6□□□□□ -1.03
TRAF4-213ENST00000578917 LRP5O75197 1615 aa8.59□□□□□ -1.03
TRAF4-213ENST00000578917 A0A087WZG4 1122 aa8.59□□□□□ -1.03
TRAF4-213ENST00000578917 MRS2Q9HD23 443 aa8.59□□□□□ -1.03
TRAF4-213ENST00000578917 CEMIPQ8WUJ3 1361 aa8.59□□□□□ -1.03
TRAF4-213ENST00000578917 NPHP1O15259 732 aa8.58□□□□□ -1.04
TRAF4-213ENST00000578917 A1BGP04217 495 aa8.58□□□□□ -1.04
TRAF4-213ENST00000578917 GYS1P13807 737 aa8.58□□□□□ -1.04
TRAF4-213ENST00000578917 USPL1Q5W0Q7 1092 aa8.58□□□□□ -1.04
TRAF4-213ENST00000578917 SRP68Q9UHB9 627 aaKnown RBP8.58□□□□□ -1.04
TRAF4-213ENST00000578917 TSPYL4Q9UJ04 414 aa8.58□□□□□ -1.04
TRAF4-213ENST00000578917 ZBTB1Q9Y2K1 713 aa8.58□□□□□ -1.04
TRAF4-213ENST00000578917 CD2APQ9Y5K6 639 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms