RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 CEP85Q6P2H3 762 aa17.57■□□□□ 0.4
VPS33B-208ENST00000574755 KDM3BQ7LBC6 1761 aa17.56■□□□□ 0.4
VPS33B-208ENST00000574755 HDGFL1Q5TGJ6 251 aa17.56■□□□□ 0.4
VPS33B-208ENST00000574755 MPRIPQ6WCQ1 1025 aa17.56■□□□□ 0.4
VPS33B-208ENST00000574755 DCTPP1Q9H773 170 aa17.56■□□□□ 0.4
VPS33B-208ENST00000574755 NPHP3Q7Z494 1330 aa17.56■□□□□ 0.4
VPS33B-208ENST00000574755 PXDNQ92626 1479 aa17.56■□□□□ 0.4
VPS33B-208ENST00000574755 ERBB3P21860 1342 aa17.55■□□□□ 0.4
VPS33B-208ENST00000574755 MFAP1P55081 439 aaKnown RBP17.54■□□□□ 0.4
VPS33B-208ENST00000574755 BMP2KLQ5H9B9 411 aa17.54■□□□□ 0.4
VPS33B-208ENST00000574755 BTBD11A6QL63 1104 aa17.53■□□□□ 0.4
VPS33B-208ENST00000574755 EIF4A1P60842 406 aaKnown RBP17.53■□□□□ 0.4
VPS33B-208ENST00000574755 TNS3Q68CZ2 1445 aa17.52■□□□□ 0.39
VPS33B-208ENST00000574755 RNMTO43148 476 aaKnown RBP17.52■□□□□ 0.39
VPS33B-208ENST00000574755 EIF2S2P20042 333 aaKnown RBP17.52■□□□□ 0.39
VPS33B-208ENST00000574755 BCL11AQ9H165 835 aa17.52■□□□□ 0.39
VPS33B-208ENST00000574755 XIRP1Q702N8 1843 aaKnown RBP17.52■□□□□ 0.39
VPS33B-208ENST00000574755 BECN1Q14457 450 aa17.51■□□□□ 0.39
VPS33B-208ENST00000574755 N4BP2Q86UW6 1770 aaPredicted RBP17.51■□□□□ 0.39
VPS33B-208ENST00000574755 HMMRO75330 724 aa17.51■□□□□ 0.39
VPS33B-208ENST00000574755 HOXB7P09629 217 aa17.51■□□□□ 0.39
VPS33B-208ENST00000574755 RTL5Q5HYW3 569 aaPredicted RBP17.51■□□□□ 0.39
VPS33B-208ENST00000574755 CABLES1Q8TDN4 633 aa17.51■□□□□ 0.39
VPS33B-208ENST00000574755 C22orf23Q9BZE7 217 aa17.51■□□□□ 0.39
VPS33B-208ENST00000574755 OVOS2A0A0G2JMS6 1433 aa17.5■□□□□ 0.39
VPS33B-208ENST00000574755 KCNQ3O43525 872 aa17.5■□□□□ 0.39
VPS33B-208ENST00000574755 GNAI2P04899 355 aa17.5■□□□□ 0.39
VPS33B-208ENST00000574755 NLRP2Q9NX02 1062 aa17.5■□□□□ 0.39
VPS33B-208ENST00000574755 CHMP4AQ9BY43 222 aa17.5■□□□□ 0.39
VPS33B-208ENST00000574755 PHAXQ9H814 394 aaKnown RBP17.5■□□□□ 0.39
VPS33B-208ENST00000574755 PXDNLA1KZ92 1463 aa17.49■□□□□ 0.39
VPS33B-208ENST00000574755 RAPGEF4Q8WZA2 1011 aa17.49■□□□□ 0.39
VPS33B-208ENST00000574755 APBB1O00213 710 aa17.48■□□□□ 0.39
VPS33B-208ENST00000574755 GNAI3P08754 354 aa17.48■□□□□ 0.39
VPS33B-208ENST00000574755 LMTK3Q96Q04 1460 aa17.48■□□□□ 0.39
VPS33B-208ENST00000574755 COL18A1P39060 1754 aa17.48■□□□□ 0.39
VPS33B-208ENST00000574755 STRCQ7RTU9 1775 aa17.48■□□□□ 0.39
VPS33B-208ENST00000574755 CRYBG1Q9Y4K1 1723 aa17.48■□□□□ 0.39
VPS33B-208ENST00000574755 SPATA31A3Q5VYP0 1347 aa17.48■□□□□ 0.39
VPS33B-208ENST00000574755 PLEKHM2Q8IWE5 1019 aa17.47■□□□□ 0.39
VPS33B-208ENST00000574755 CHPF2Q9P2E5 772 aa17.47■□□□□ 0.39
VPS33B-208ENST00000574755 CSB-PGBD3P0DP91 1061 aa17.47■□□□□ 0.39
VPS33B-208ENST00000574755 SIPA1L3O60292 1781 aaPredicted RBP17.46■□□□□ 0.39
VPS33B-208ENST00000574755 CHRNA2Q15822 529 aa17.46■□□□□ 0.39
VPS33B-208ENST00000574755 C16orf71Q8IYS4 520 aaPredicted RBP17.46■□□□□ 0.39
VPS33B-208ENST00000574755 BRINP3Q76B58 766 aa17.45■□□□□ 0.38
VPS33B-208ENST00000574755 ADAMTS7Q9UKP4 1686 aa17.45■□□□□ 0.38
VPS33B-208ENST00000574755 SMARCA5O60264 1052 aaPredicted RBP17.45■□□□□ 0.38
VPS33B-208ENST00000574755 TATP17735 454 aaPredicted RBP17.45■□□□□ 0.38
VPS33B-208ENST00000574755 GSPT1P15170 499 aaKnown RBP17.44■□□□□ 0.38
VPS33B-208ENST00000574755 ABCC6O95255 1503 aa17.44■□□□□ 0.38
VPS33B-208ENST00000574755 KDM4FA0A1W2PPD8 638 aa17.44■□□□□ 0.38
VPS33B-208ENST00000574755 TBC1D9Q6ZT07 1266 aa17.44■□□□□ 0.38
VPS33B-208ENST00000574755 UBTFL1P0CB47 393 aaPredicted RBP17.43■□□□□ 0.38
VPS33B-208ENST00000574755 TTC22Q5TAA0 569 aa17.43■□□□□ 0.38
VPS33B-208ENST00000574755 USP44Q9H0E7 712 aa17.43■□□□□ 0.38
VPS33B-208ENST00000574755 SPG7Q9UQ90 795 aa17.43■□□□□ 0.38
VPS33B-208ENST00000574755 MEGF6O75095 1541 aa17.43■□□□□ 0.38
VPS33B-208ENST00000574755 GIGYF1O75420 1035 aaPredicted RBP17.43■□□□□ 0.38
VPS33B-208ENST00000574755 OTUD7AQ8TE49 926 aaPredicted RBP17.43■□□□□ 0.38
VPS33B-208ENST00000574755 SRCIN1Q9C0H9 1055 aa17.43■□□□□ 0.38
VPS33B-208ENST00000574755 USP35Q9P2H5 1018 aa17.43■□□□□ 0.38
VPS33B-208ENST00000574755 DBF4Q9UBU7 674 aaPredicted RBP17.43■□□□□ 0.38
VPS33B-208ENST00000574755 LRRFIP2Q9Y608 721 aaKnown RBP17.43■□□□□ 0.38
VPS33B-208ENST00000574755 SCN11AQ9UI33 1791 aa17.42■□□□□ 0.38
VPS33B-208ENST00000574755 CDC45O75419 566 aa17.42■□□□□ 0.38
VPS33B-208ENST00000574755 ANXA1P04083 346 aa17.42■□□□□ 0.38
VPS33B-208ENST00000574755 TBC1D2Q9BYX2 928 aa17.42■□□□□ 0.38
VPS33B-208ENST00000574755 ZNF335Q9H4Z2 1342 aaPredicted RBP17.42■□□□□ 0.38
VPS33B-208ENST00000574755 PI4KAP2A4QPH2 592 aa17.42■□□□□ 0.38
VPS33B-208ENST00000574755 PI4KAP1Q8N8J0 262 aa17.42■□□□□ 0.38
VPS33B-208ENST00000574755 EXOC6BQ9Y2D4 811 aa17.42■□□□□ 0.38
VPS33B-208ENST00000574755 PNMA6EA0A0J9YXQ4 647 aa17.41■□□□□ 0.38
VPS33B-208ENST00000574755 ATP8B2P98198 1209 aa17.41■□□□□ 0.38
VPS33B-208ENST00000574755 DNAAF4Q8WXU2 420 aa17.41■□□□□ 0.38
VPS33B-208ENST00000574755 CPDO75976 1380 aa17.41■□□□□ 0.38
VPS33B-208ENST00000574755 PHKG2P15735 406 aa17.4■□□□□ 0.38
VPS33B-208ENST00000574755 RBM25P49756 843 aaKnown RBP17.4■□□□□ 0.38
VPS33B-208ENST00000574755 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.4■□□□□ 0.38
VPS33B-208ENST00000574755 HEG1Q9ULI3 1381 aa17.4■□□□□ 0.38
VPS33B-208ENST00000574755 KDM6AO15550 1401 aaPredicted RBP17.4■□□□□ 0.38
VPS33B-208ENST00000574755 IFNL2Q8IZJ0 200 aa17.39■□□□□ 0.38
VPS33B-208ENST00000574755 SLAIN2Q9P270 581 aa17.39■□□□□ 0.38
VPS33B-208ENST00000574755 PRAMEF22A3QJZ6 481 aa17.39■□□□□ 0.37
VPS33B-208ENST00000574755 SLC52A2Q9HAB3 445 aa17.39■□□□□ 0.37
VPS33B-208ENST00000574755 NFKBIBQ15653 356 aa17.38■□□□□ 0.37
VPS33B-208ENST00000574755 SLKQ9H2G2 1235 aaPredicted RBP17.38■□□□□ 0.37
VPS33B-208ENST00000574755 ADCY9O60503 1353 aa17.38■□□□□ 0.37
VPS33B-208ENST00000574755 BEND3Q5T5X7 828 aa17.38■□□□□ 0.37
VPS33B-208ENST00000574755 LRRCC1Q9C099 1032 aa17.38■□□□□ 0.37
VPS33B-208ENST00000574755 ZNF790Q6PG37 636 aa17.37■□□□□ 0.37
VPS33B-208ENST00000574755 SLC39A6Q13433 755 aa17.37■□□□□ 0.37
VPS33B-208ENST00000574755 PROSER3Q2NL68 480 aa17.37■□□□□ 0.37
VPS33B-208ENST00000574755 NFATC2IPQ8NCF5 419 aa17.37■□□□□ 0.37
VPS33B-208ENST00000574755 PKD1L3Q7Z443 1732 aa17.36■□□□□ 0.37
VPS33B-208ENST00000574755 PLEKHG2Q9H7P9 1386 aa17.36■□□□□ 0.37
VPS33B-208ENST00000574755 PRDM11Q9NQV5 511 aa17.36■□□□□ 0.37
VPS33B-208ENST00000574755 IBTKQ9P2D0 1353 aaPredicted RBP17.36■□□□□ 0.37
VPS33B-208ENST00000574755 SOS2Q07890 1332 aaPredicted RBP17.36■□□□□ 0.37
VPS33B-208ENST00000574755 NBPF7P0C2Y1 421 aaPredicted RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms