RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 PIP4K2AP48426 406 aaPredicted RBP12.44□□□□□ -0.42
SMG6-213ENST00000573166 CCDC57Q2TAC2 916 aa12.44□□□□□ -0.42
SMG6-213ENST00000573166 SIL1Q9H173 461 aa12.44□□□□□ -0.42
SMG6-213ENST00000573166 CHPF2Q9P2E5 772 aa12.44□□□□□ -0.42
SMG6-213ENST00000573166 TRPC5Q9UL62 973 aaPredicted RBP12.44□□□□□ -0.42
SMG6-213ENST00000573166 SRGAP3O43295 1099 aa12.44□□□□□ -0.42
SMG6-213ENST00000573166 CARD10Q9BWT7 1032 aa12.44□□□□□ -0.42
SMG6-213ENST00000573166 FBXW7Q969H0 707 aa12.43□□□□□ -0.42
SMG6-213ENST00000573166 MPHOSPH8Q99549 860 aa12.43□□□□□ -0.42
SMG6-213ENST00000573166 WDR17Q8IZU2 1322 aa12.43□□□□□ -0.42
SMG6-213ENST00000573166 HSP90AB3PQ58FF7 597 aa12.43□□□□□ -0.42
SMG6-213ENST00000573166 ISY1Q9ULR0 285 aaKnown RBP12.43□□□□□ -0.42
SMG6-213ENST00000573166 ATP5J2-PTCD1G3V325 749 aa12.42□□□□□ -0.42
SMG6-213ENST00000573166 TRIM27P14373 513 aa12.42□□□□□ -0.42
SMG6-213ENST00000573166 ZNF790Q6PG37 636 aa12.42□□□□□ -0.42
SMG6-213ENST00000573166 ANKRD13DQ6ZTN6 518 aa12.42□□□□□ -0.42
SMG6-213ENST00000573166 COPS6Q7L5N1 327 aa12.42□□□□□ -0.42
SMG6-213ENST00000573166 TSPYL6Q8N831 410 aa12.42□□□□□ -0.42
SMG6-213ENST00000573166 TRMT112Q9UI30 125 aaKnown RBP12.42□□□□□ -0.42
SMG6-213ENST00000573166 RFC4P35249 363 aa12.42□□□□□ -0.42
SMG6-213ENST00000573166 XAGE3Q8WTP9 111 aa12.42□□□□□ -0.42
SMG6-213ENST00000573166 MAP3K2Q9Y2U5 619 aa12.42□□□□□ -0.42
SMG6-213ENST00000573166 DLC1Q96QB1 1528 aa12.42□□□□□ -0.42
SMG6-213ENST00000573166 A0A087WZG4 1122 aa12.42□□□□□ -0.42
SMG6-213ENST00000573166 C20orf194Q5TEA3 1177 aa12.42□□□□□ -0.42
SMG6-213ENST00000573166 DIAPH3Q9NSV4 1193 aa12.42□□□□□ -0.42
SMG6-213ENST00000573166 NRXN1Q9ULB1 1477 aa12.41□□□□□ -0.42
SMG6-213ENST00000573166 LRRFIP1Q32MZ4 808 aaKnown RBP12.41□□□□□ -0.42
SMG6-213ENST00000573166 TRIM35Q9UPQ4 493 aa12.41□□□□□ -0.42
SMG6-213ENST00000573166 QRICH2Q9H0J4 1663 aa12.41□□□□□ -0.42
SMG6-213ENST00000573166 PTPRCP08575 1304 aa12.41□□□□□ -0.42
SMG6-213ENST00000573166 SLC52A2Q9HAB3 445 aa12.41□□□□□ -0.42
SMG6-213ENST00000573166 RTL1A6NKG5 1358 aa12.4□□□□□ -0.42
SMG6-213ENST00000573166 TNS3Q68CZ2 1445 aa12.4□□□□□ -0.42
SMG6-213ENST00000573166 ERC2O15083 957 aa12.4□□□□□ -0.42
SMG6-213ENST00000573166 IGSF1Q8N6C5 1336 aa12.4□□□□□ -0.42
SMG6-213ENST00000573166 TECPR2O15040 1411 aa12.4□□□□□ -0.42
SMG6-213ENST00000573166 PHKG2P15735 406 aa12.4□□□□□ -0.42
SMG6-213ENST00000573166 BCORL1Q5H9F3 1711 aa12.4□□□□□ -0.42
SMG6-213ENST00000573166 SPINK5Q9NQ38 1064 aaPredicted RBP12.4□□□□□ -0.42
SMG6-213ENST00000573166 TOMM22Q9NS69 142 aa12.4□□□□□ -0.42
SMG6-213ENST00000573166 AXIN2Q9Y2T1 843 aa12.4□□□□□ -0.42
SMG6-213ENST00000573166 VAMP4O75379 141 aa12.39□□□□□ -0.43
SMG6-213ENST00000573166 ERC1Q8IUD2 1116 aa12.39□□□□□ -0.43
SMG6-213ENST00000573166 UNC5CLQ8IV45 518 aa12.39□□□□□ -0.43
SMG6-213ENST00000573166 RPAP2Q8IXW5 612 aaPredicted RBP12.39□□□□□ -0.43
SMG6-213ENST00000573166 KIF24Q5T7B8 1368 aa12.39□□□□□ -0.43
SMG6-213ENST00000573166 TBC1D2BQ9UPU7 963 aa12.39□□□□□ -0.43
SMG6-213ENST00000573166 CHL1O00533 1208 aa12.38□□□□□ -0.43
SMG6-213ENST00000573166 HSPA1LP34931 641 aa12.38□□□□□ -0.43
SMG6-213ENST00000573166 ZNF772Q68DY9 489 aaPredicted RBP12.38□□□□□ -0.43
SMG6-213ENST00000573166 IL17REQ8NFR9 667 aa12.38□□□□□ -0.43
SMG6-213ENST00000573166 CEP126Q9P2H0 1117 aa12.38□□□□□ -0.43
SMG6-213ENST00000573166 MROH2AA6NES4 1674 aa12.38□□□□□ -0.43
SMG6-213ENST00000573166 SLIT1O75093 1534 aa12.38□□□□□ -0.43
SMG6-213ENST00000573166 GCC1Q96CN9 775 aa12.38□□□□□ -0.43
SMG6-213ENST00000573166 ARHGAP23Q9P227 1491 aa12.38□□□□□ -0.43
SMG6-213ENST00000573166 UBE3BQ7Z3V4 1068 aa12.38□□□□□ -0.43
SMG6-213ENST00000573166 NOL10Q9BSC4 688 aaKnown RBP12.38□□□□□ -0.43
SMG6-213ENST00000573166 CDC42BPGQ6DT37 1551 aa12.38□□□□□ -0.43
SMG6-213ENST00000573166 ADGRB1O14514 1584 aa12.38□□□□□ -0.43
SMG6-213ENST00000573166 HSCBQ8IWL3 235 aa12.38□□□□□ -0.43
SMG6-213ENST00000573166 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.38□□□□□ -0.43
SMG6-213ENST00000573166 TFCP2L1Q9NZI6 479 aa12.38□□□□□ -0.43
SMG6-213ENST00000573166 CCNL1Q9UK58 526 aaPredicted RBP12.38□□□□□ -0.43
SMG6-213ENST00000573166 ZNF496Q96IT1 587 aaPredicted RBP12.37□□□□□ -0.43
SMG6-213ENST00000573166 CWC25Q9NXE8 425 aaPredicted RBP12.37□□□□□ -0.43
SMG6-213ENST00000573166 RTCBQ9Y3I0 505 aaKnown RBP12.37□□□□□ -0.43
SMG6-213ENST00000573166 ERVV-2B6SEH9 535 aa12.37□□□□□ -0.43
SMG6-213ENST00000573166 IGHMBP2P38935 993 aaKnown RBP12.37□□□□□ -0.43
SMG6-213ENST00000573166 RUFY2Q8WXA3 655 aa12.37□□□□□ -0.43
SMG6-213ENST00000573166 EXOC6BQ9Y2D4 811 aa12.37□□□□□ -0.43
SMG6-213ENST00000573166 FAM182BQ5T319 152 aa12.36□□□□□ -0.43
SMG6-213ENST00000573166 SKAP1Q86WV1 359 aa12.36□□□□□ -0.43
SMG6-213ENST00000573166 JARID2Q92833 1246 aaPredicted RBP12.36□□□□□ -0.43
SMG6-213ENST00000573166 LRRCC1Q9C099 1032 aa12.36□□□□□ -0.43
SMG6-213ENST00000573166 BABAM1Q9NWV8 329 aa12.36□□□□□ -0.43
SMG6-213ENST00000573166 PDZRN3Q9UPQ7 1066 aa12.36□□□□□ -0.43
SMG6-213ENST00000573166 LRRFIP2Q9Y608 721 aaKnown RBP12.36□□□□□ -0.43
SMG6-213ENST00000573166 JCADQ9P266 1359 aa12.36□□□□□ -0.43
SMG6-213ENST00000573166 CPSF1Q10570 1443 aaKnown RBP12.36□□□□□ -0.43
SMG6-213ENST00000573166 FAM161AQ3B820 660 aa12.36□□□□□ -0.43
SMG6-213ENST00000573166 APPP05067 770 aa12.36□□□□□ -0.43
SMG6-213ENST00000573166 RXRBP28702 533 aa12.36□□□□□ -0.43
SMG6-213ENST00000573166 DZIP3Q86Y13 1208 aaKnown RBP12.36□□□□□ -0.43
SMG6-213ENST00000573166 KSR2Q6VAB6 950 aa12.35□□□□□ -0.43
SMG6-213ENST00000573166 IL1RAPL2Q9NP60 686 aa12.35□□□□□ -0.43
SMG6-213ENST00000573166 C3P01024 1663 aa12.35□□□□□ -0.43
SMG6-213ENST00000573166 AFF2P51816 1311 aa12.35□□□□□ -0.43
SMG6-213ENST00000573166 DNAJC10Q8IXB1 793 aa12.35□□□□□ -0.43
SMG6-213ENST00000573166 DDX21Q9NR30 783 aaKnown RBP eCLIP12.35□□□□□ -0.43
SMG6-213ENST00000573166 DIP2AQ14689 1571 aa12.35□□□□□ -0.43
SMG6-213ENST00000573166 PPLO60437 1756 aa12.35□□□□□ -0.43
SMG6-213ENST00000573166 GNPATO15228 680 aa12.35□□□□□ -0.43
SMG6-213ENST00000573166 IFIT5Q13325 482 aaKnown RBP12.35□□□□□ -0.43
SMG6-213ENST00000573166 PPP1R42Q7Z4L9 355 aa12.35□□□□□ -0.43
SMG6-213ENST00000573166 MRPL50Q8N5N7 158 aaKnown RBP12.35□□□□□ -0.43
SMG6-213ENST00000573166 ARHGAP45Q92619 1136 aa12.35□□□□□ -0.43
SMG6-213ENST00000573166 USP31Q70CQ4 1352 aa12.35□□□□□ -0.43
SMG6-213ENST00000573166 SLC4A3P48751 1232 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 121.2 ms