RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 NBPF10Q6P3W6 841 aaKnown RBP8.19□□□□□ -1.1
NUP88-202ENST00000570937 LARGE2Q8N3Y3 721 aa8.19□□□□□ -1.1
NUP88-202ENST00000570937 NBPF15Q8N660 670 aa8.19□□□□□ -1.1
NUP88-202ENST00000570937 VSIG8P0DPA2 414 aa8.18□□□□□ -1.1
NUP88-202ENST00000570937 LMOD1P29536 600 aaPredicted RBP8.18□□□□□ -1.1
NUP88-202ENST00000570937 SMTNP53814 917 aa8.18□□□□□ -1.1
NUP88-202ENST00000570937 POU4F2Q12837 409 aa8.18□□□□□ -1.1
NUP88-202ENST00000570937 MTFR1Q15390 333 aa8.18□□□□□ -1.1
NUP88-202ENST00000570937 KANK4Q5T7N3 995 aaPredicted RBP8.18□□□□□ -1.1
NUP88-202ENST00000570937 TAS1R3Q7RTX0 852 aa8.18□□□□□ -1.1
NUP88-202ENST00000570937 PPARGC1BQ86YN6 1023 aaKnown RBP8.18□□□□□ -1.1
NUP88-202ENST00000570937 OGFOD1Q8N543 542 aa8.18□□□□□ -1.1
NUP88-202ENST00000570937 DNAAF2Q9NVR5 837 aaKnown RBP8.18□□□□□ -1.1
NUP88-202ENST00000570937 KIAA1024Q9UPX6 916 aa8.18□□□□□ -1.1
NUP88-202ENST00000570937 BACH1O14867 736 aa8.17□□□□□ -1.1
NUP88-202ENST00000570937 DKK1O94907 266 aa8.17□□□□□ -1.1
NUP88-202ENST00000570937 RHOQP17081 205 aa8.17□□□□□ -1.1
NUP88-202ENST00000570937 VEGFBP49765 207 aa8.17□□□□□ -1.1
NUP88-202ENST00000570937 PSME1Q06323 249 aa8.17□□□□□ -1.1
NUP88-202ENST00000570937 TLR1Q15399 786 aa8.17□□□□□ -1.1
NUP88-202ENST00000570937 LCE2CQ5TA81 110 aa8.17□□□□□ -1.1
NUP88-202ENST00000570937 CCDC102BQ68D86 513 aa8.17□□□□□ -1.1
NUP88-202ENST00000570937 SIX5Q8N196 739 aa8.17□□□□□ -1.1
NUP88-202ENST00000570937 ZNF358Q9NW07 568 aa8.17□□□□□ -1.1
NUP88-202ENST00000570937 DYRK1BQ9Y463 629 aa8.17□□□□□ -1.1
NUP88-202ENST00000570937 GTF2E1P29083 439 aaPredicted RBP8.16□□□□□ -1.1
NUP88-202ENST00000570937 TMEM214Q6NUQ4 689 aaKnown RBP8.16□□□□□ -1.1
NUP88-202ENST00000570937 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.16□□□□□ -1.1
NUP88-202ENST00000570937 TPCN2Q8NHX9 752 aa8.16□□□□□ -1.1
NUP88-202ENST00000570937 RHBDD1Q8TEB9 315 aa8.16□□□□□ -1.1
NUP88-202ENST00000570937 NANOS1Q8WY41 292 aaKnown RBP8.16□□□□□ -1.1
NUP88-202ENST00000570937 IRF7Q92985 503 aa8.16□□□□□ -1.1
NUP88-202ENST00000570937 A6NJY4 79 aa8.15□□□□□ -1.1
NUP88-202ENST00000570937 M0R2N6 131 aa8.15□□□□□ -1.1
NUP88-202ENST00000570937 CDK2AP1O14519 115 aa8.15□□□□□ -1.1
NUP88-202ENST00000570937 RASA1P20936 1047 aa8.15□□□□□ -1.1
NUP88-202ENST00000570937 ITGA6P23229 1130 aa8.15□□□□□ -1.1
NUP88-202ENST00000570937 GNASQ5JWF2 1037 aa8.15□□□□□ -1.1
NUP88-202ENST00000570937 VRTNQ9H8Y1 702 aa8.15□□□□□ -1.1
NUP88-202ENST00000570937 SERTAD1Q9UHV2 236 aa8.15□□□□□ -1.1
NUP88-202ENST00000570937 IQSEC3Q9UPP2 1182 aaPredicted RBP8.15□□□□□ -1.1
NUP88-202ENST00000570937 ERBB4Q15303 1308 aa8.14□□□□□ -1.11
NUP88-202ENST00000570937 FAM196BA6NMK8 535 aa8.14□□□□□ -1.11
NUP88-202ENST00000570937 EPHA4P54764 986 aa8.14□□□□□ -1.11
NUP88-202ENST00000570937 C4orf17Q53FE4 359 aa8.14□□□□□ -1.11
NUP88-202ENST00000570937 ZNF295-AS1Q8N0V1 137 aa8.14□□□□□ -1.11
NUP88-202ENST00000570937 PTK7Q13308 1070 aa8.13□□□□□ -1.11
NUP88-202ENST00000570937 CRTC2Q53ET0 693 aaPredicted RBP8.13□□□□□ -1.11
NUP88-202ENST00000570937 GMCL1Q96IK5 515 aa8.13□□□□□ -1.11
NUP88-202ENST00000570937 TIMMDC1Q9NPL8 285 aa8.13□□□□□ -1.11
NUP88-202ENST00000570937 SCHIP1Q9P0W5 487 aaPredicted RBP8.13□□□□□ -1.11
NUP88-202ENST00000570937 STK17AQ9UEE5 414 aa8.13□□□□□ -1.11
NUP88-202ENST00000570937 SERPINA10Q9UK55 444 aa8.13□□□□□ -1.11
NUP88-202ENST00000570937 ARID3CA6NKF2 412 aa8.12□□□□□ -1.11
NUP88-202ENST00000570937 WIPF1O43516 503 aa8.12□□□□□ -1.11
NUP88-202ENST00000570937 FOXK2Q01167 660 aa8.12□□□□□ -1.11
NUP88-202ENST00000570937 LARP1Q6PKG0 1096 aaKnown RBP8.12□□□□□ -1.11
NUP88-202ENST00000570937 ZNF594Q96JF6 807 aaPredicted RBP8.12□□□□□ -1.11
NUP88-202ENST00000570937 NIFKQ9BYG3 293 aaKnown RBP8.12□□□□□ -1.11
NUP88-202ENST00000570937 A0A1B0GTH6 734 aa8.11□□□□□ -1.11
NUP88-202ENST00000570937 USP17L15C9J2P7 530 aa8.11□□□□□ -1.11
NUP88-202ENST00000570937 USP17L10C9JJH3 530 aa8.11□□□□□ -1.11
NUP88-202ENST00000570937 USP17L13C9JLJ4 530 aa8.11□□□□□ -1.11
NUP88-202ENST00000570937 USP17L12C9JPN9 530 aa8.11□□□□□ -1.11
NUP88-202ENST00000570937 USP17L11C9JVI0 530 aa8.11□□□□□ -1.11
NUP88-202ENST00000570937 USP17L21D6R901 530 aa8.11□□□□□ -1.11
NUP88-202ENST00000570937 USP17L18D6R9N7 530 aa8.11□□□□□ -1.11
NUP88-202ENST00000570937 USP17L22D6RA61 530 aa8.11□□□□□ -1.11
NUP88-202ENST00000570937 USP17L17D6RBQ6 530 aa8.11□□□□□ -1.11
NUP88-202ENST00000570937 USP17L19D6RCP7 530 aa8.11□□□□□ -1.11
NUP88-202ENST00000570937 USP17L20D6RJB6 530 aa8.11□□□□□ -1.11
NUP88-202ENST00000570937 SRPK2P78362 688 aaKnown RBP8.11□□□□□ -1.11
NUP88-202ENST00000570937 USP17L24Q0WX57 530 aa8.11□□□□□ -1.11
NUP88-202ENST00000570937 CCDC97Q96F63 343 aaPredicted RBP8.11□□□□□ -1.11
NUP88-202ENST00000570937 LOC100996750A0A140TA64 210 aa8.1□□□□□ -1.11
NUP88-202ENST00000570937 F11P03951 625 aa8.1□□□□□ -1.11
NUP88-202ENST00000570937 PHKA2P46019 1235 aa8.1□□□□□ -1.11
NUP88-202ENST00000570937 SEC13P55735 322 aa8.1□□□□□ -1.11
NUP88-202ENST00000570937 TRIM22Q8IYM9 498 aa8.1□□□□□ -1.11
NUP88-202ENST00000570937 KRTAP4-6Q9BYQ5 205 aa8.1□□□□□ -1.11
NUP88-202ENST00000570937 CUEDC1Q9NWM3 386 aaPredicted RBP8.1□□□□□ -1.11
NUP88-202ENST00000570937 RBM19Q9Y4C8 960 aaKnown RBP8.1□□□□□ -1.11
NUP88-202ENST00000570937 USP3Q9Y6I4 520 aa8.1□□□□□ -1.11
NUP88-202ENST00000570937 SFI1A8K8P3 1242 aa8.09□□□□□ -1.11
NUP88-202ENST00000570937 H7C1W4 665 aa8.09□□□□□ -1.11
NUP88-202ENST00000570937 GMPRP36959 345 aa8.09□□□□□ -1.11
NUP88-202ENST00000570937 SV2AQ7L0J3 742 aa8.09□□□□□ -1.11
NUP88-202ENST00000570937 ANKMY2Q8IV38 441 aa8.09□□□□□ -1.11
NUP88-202ENST00000570937 TNS4Q8IZW8 715 aa8.09□□□□□ -1.11
NUP88-202ENST00000570937 ARXQ96QS3 562 aa8.09□□□□□ -1.11
NUP88-202ENST00000570937 C1orf115Q9H7X2 142 aa8.09□□□□□ -1.11
NUP88-202ENST00000570937 RFX1P22670 979 aa8.08□□□□□ -1.12
NUP88-202ENST00000570937 PLA2G4AP47712 749 aa8.08□□□□□ -1.12
NUP88-202ENST00000570937 INSM1Q01101 510 aaPredicted RBP8.08□□□□□ -1.12
NUP88-202ENST00000570937 DPYDQ12882 1025 aa8.08□□□□□ -1.12
NUP88-202ENST00000570937 DBN1Q16643 649 aa8.08□□□□□ -1.12
NUP88-202ENST00000570937 VWA5B2Q8N398 1253 aa8.08□□□□□ -1.12
NUP88-202ENST00000570937 GPR161Q8N6U8 529 aaKnown RBP8.08□□□□□ -1.12
NUP88-202ENST00000570937 C1orf216Q8TAB5 229 aa8.08□□□□□ -1.12
NUP88-202ENST00000570937 GAS2L1Q99501 681 aaPredicted RBP8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms