RNA–Protein interactions for RNA: ENST00000566582.1

LINC01541-201, Transcript of long intergenic non-protein coding RNA 1541, humanhuman

TSL 2

Gene LINC01541, Length 2,414 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01541-201ENST00000566582 HMMRO75330 724 aa10.91□□□□□ -0.66
LINC01541-201ENST00000566582 BMP2KLQ5H9B9 411 aa10.91□□□□□ -0.66
LINC01541-201ENST00000566582 C22orf23Q9BZE7 217 aa10.91□□□□□ -0.66
LINC01541-201ENST00000566582 PHRF1Q9P1Y6 1649 aaKnown RBP10.91□□□□□ -0.66
LINC01541-201ENST00000566582 MST1RQ04912 1400 aa10.9□□□□□ -0.66
LINC01541-201ENST00000566582 TRPM3Q9HCF6 1732 aaPredicted RBP10.9□□□□□ -0.66
LINC01541-201ENST00000566582 NLRP2Q9NX02 1062 aa10.9□□□□□ -0.66
LINC01541-201ENST00000566582 NPHP3Q7Z494 1330 aa10.9□□□□□ -0.66
LINC01541-201ENST00000566582 CSB-PGBD3P0DP91 1061 aa10.9□□□□□ -0.66
LINC01541-201ENST00000566582 ARXQ96QS3 562 aa10.9□□□□□ -0.66
LINC01541-201ENST00000566582 ATP10DQ9P241 1426 aa10.9□□□□□ -0.67
LINC01541-201ENST00000566582 GNAI2P04899 355 aa10.89□□□□□ -0.67
LINC01541-201ENST00000566582 EIF4A1P60842 406 aaKnown RBP10.89□□□□□ -0.67
LINC01541-201ENST00000566582 CABLES1Q8TDN4 633 aa10.89□□□□□ -0.67
LINC01541-201ENST00000566582 RAPGEF4Q8WZA2 1011 aa10.89□□□□□ -0.67
LINC01541-201ENST00000566582 CHMP4AQ9BY43 222 aa10.89□□□□□ -0.67
LINC01541-201ENST00000566582 RNMTO43148 476 aaKnown RBP10.89□□□□□ -0.67
LINC01541-201ENST00000566582 GNAI3P08754 354 aa10.89□□□□□ -0.67
LINC01541-201ENST00000566582 PHAXQ9H814 394 aaKnown RBP10.89□□□□□ -0.67
LINC01541-201ENST00000566582 ERBB3P21860 1342 aa10.89□□□□□ -0.67
LINC01541-201ENST00000566582 DCCP43146 1447 aa10.89□□□□□ -0.67
LINC01541-201ENST00000566582 PRKCSHP14314 528 aaPredicted RBP10.88□□□□□ -0.67
LINC01541-201ENST00000566582 FAM208AQ9UK61 1670 aaKnown RBP10.88□□□□□ -0.67
LINC01541-201ENST00000566582 KCNQ3O43525 872 aa10.88□□□□□ -0.67
LINC01541-201ENST00000566582 STRCP1A6NGW2 1772 aa10.87□□□□□ -0.67
LINC01541-201ENST00000566582 SMARCA5O60264 1052 aaPredicted RBP10.87□□□□□ -0.67
LINC01541-201ENST00000566582 C16orf71Q8IYS4 520 aaPredicted RBP10.87□□□□□ -0.67
LINC01541-201ENST00000566582 CHPF2Q9P2E5 772 aa10.87□□□□□ -0.67
LINC01541-201ENST00000566582 NCOA3Q9Y6Q9 1424 aa10.87□□□□□ -0.67
LINC01541-201ENST00000566582 CHRNA2Q15822 529 aa10.87□□□□□ -0.67
LINC01541-201ENST00000566582 PLEKHM2Q8IWE5 1019 aa10.87□□□□□ -0.67
LINC01541-201ENST00000566582 PXDNQ92626 1479 aa10.87□□□□□ -0.67
LINC01541-201ENST00000566582 HOXB7P09629 217 aa10.86□□□□□ -0.67
LINC01541-201ENST00000566582 SLKQ9H2G2 1235 aaPredicted RBP10.86□□□□□ -0.67
LINC01541-201ENST00000566582 USP35Q9P2H5 1018 aa10.86□□□□□ -0.67
LINC01541-201ENST00000566582 RGPD5Q99666 1765 aa10.86□□□□□ -0.67
LINC01541-201ENST00000566582 LMO7Q8WWI1 1683 aa10.86□□□□□ -0.67
LINC01541-201ENST00000566582 ALS2Q96Q42 1657 aa10.86□□□□□ -0.67
LINC01541-201ENST00000566582 MED1Q15648 1581 aaPredicted RBP10.86□□□□□ -0.67
LINC01541-201ENST00000566582 NCAPD2Q15021 1401 aa10.86□□□□□ -0.67
LINC01541-201ENST00000566582 UBTFL1P0CB47 393 aaPredicted RBP10.86□□□□□ -0.67
LINC01541-201ENST00000566582 TATP17735 454 aaPredicted RBP10.86□□□□□ -0.67
LINC01541-201ENST00000566582 TBC1D9Q6ZT07 1266 aa10.85□□□□□ -0.67
LINC01541-201ENST00000566582 TNS3Q68CZ2 1445 aa10.85□□□□□ -0.67
LINC01541-201ENST00000566582 CACNA1FO60840 1977 aa10.85□□□□□ -0.67
LINC01541-201ENST00000566582 CDC45O75419 566 aa10.85□□□□□ -0.67
LINC01541-201ENST00000566582 ANXA1P04083 346 aa10.85□□□□□ -0.67
LINC01541-201ENST00000566582 TBC1D2Q9BYX2 928 aa10.85□□□□□ -0.67
LINC01541-201ENST00000566582 SRCIN1Q9C0H9 1055 aa10.85□□□□□ -0.67
LINC01541-201ENST00000566582 SPG7Q9UQ90 795 aa10.85□□□□□ -0.67
LINC01541-201ENST00000566582 EXOC6BQ9Y2D4 811 aa10.85□□□□□ -0.67
LINC01541-201ENST00000566582 LRRFIP2Q9Y608 721 aaKnown RBP10.85□□□□□ -0.67
LINC01541-201ENST00000566582 GSPT1P15170 499 aaKnown RBP10.84□□□□□ -0.67
LINC01541-201ENST00000566582 NFKBIBQ15653 356 aa10.84□□□□□ -0.67
LINC01541-201ENST00000566582 TTC22Q5TAA0 569 aa10.84□□□□□ -0.67
LINC01541-201ENST00000566582 OTUD7AQ8TE49 926 aaPredicted RBP10.84□□□□□ -0.67
LINC01541-201ENST00000566582 DBF4Q9UBU7 674 aaPredicted RBP10.84□□□□□ -0.67
LINC01541-201ENST00000566582 SPATA31A3Q5VYP0 1347 aa10.84□□□□□ -0.67
LINC01541-201ENST00000566582 PI4KAP2A4QPH2 592 aa10.84□□□□□ -0.67
LINC01541-201ENST00000566582 PI4KAP1Q8N8J0 262 aa10.84□□□□□ -0.67
LINC01541-201ENST00000566582 SPRYD3Q8NCJ5 442 aa10.84□□□□□ -0.67
LINC01541-201ENST00000566582 USP44Q9H0E7 712 aa10.84□□□□□ -0.67
LINC01541-201ENST00000566582 KDM3BQ7LBC6 1761 aa10.83□□□□□ -0.68
LINC01541-201ENST00000566582 PNMA6EA0A0J9YXQ4 647 aa10.83□□□□□ -0.68
LINC01541-201ENST00000566582 ATP8B2P98198 1209 aa10.83□□□□□ -0.68
LINC01541-201ENST00000566582 DNAAF4Q8WXU2 420 aa10.83□□□□□ -0.68
LINC01541-201ENST00000566582 PXDNLA1KZ92 1463 aa10.83□□□□□ -0.68
LINC01541-201ENST00000566582 GIGYF1O75420 1035 aaPredicted RBP10.83□□□□□ -0.68
LINC01541-201ENST00000566582 DEKP35659 375 aaKnown RBP10.83□□□□□ -0.68
LINC01541-201ENST00000566582 CASC1Q6TDU7 716 aa10.83□□□□□ -0.68
LINC01541-201ENST00000566582 BRINP3Q76B58 766 aa10.83□□□□□ -0.68
LINC01541-201ENST00000566582 HSCBQ8IWL3 235 aa10.83□□□□□ -0.68
LINC01541-201ENST00000566582 LRRCC1Q9C099 1032 aa10.83□□□□□ -0.68
LINC01541-201ENST00000566582 RBM25P49756 843 aaKnown RBP10.82□□□□□ -0.68
LINC01541-201ENST00000566582 OVOS2A0A0G2JMS6 1433 aa10.82□□□□□ -0.68
LINC01541-201ENST00000566582 EIF5BO60841 1220 aaKnown RBP10.82□□□□□ -0.68
LINC01541-201ENST00000566582 IFNL2Q8IZJ0 200 aa10.82□□□□□ -0.68
LINC01541-201ENST00000566582 CAMTA1Q9Y6Y1 1673 aa10.81□□□□□ -0.68
LINC01541-201ENST00000566582 PRAMEF22A3QJZ6 481 aa10.81□□□□□ -0.68
LINC01541-201ENST00000566582 PHKG2P15735 406 aa10.81□□□□□ -0.68
LINC01541-201ENST00000566582 SLC39A6Q13433 755 aa10.81□□□□□ -0.68
LINC01541-201ENST00000566582 NFATC2IPQ8NCF5 419 aa10.81□□□□□ -0.68
LINC01541-201ENST00000566582 ZNF335Q9H4Z2 1342 aaPredicted RBP10.81□□□□□ -0.68
LINC01541-201ENST00000566582 SDSP20132 328 aa10.8□□□□□ -0.68
LINC01541-201ENST00000566582 SLC52A2Q9HAB3 445 aa10.8□□□□□ -0.68
LINC01541-201ENST00000566582 PRDM11Q9NQV5 511 aa10.8□□□□□ -0.68
LINC01541-201ENST00000566582 SLAIN2Q9P270 581 aa10.8□□□□□ -0.68
LINC01541-201ENST00000566582 AIMP1Q12904 312 aaKnown RBP10.8□□□□□ -0.68
LINC01541-201ENST00000566582 BEND3Q5T5X7 828 aa10.8□□□□□ -0.68
LINC01541-201ENST00000566582 ZNF790Q6PG37 636 aa10.8□□□□□ -0.68
LINC01541-201ENST00000566582 MAP3K2Q9Y2U5 619 aa10.8□□□□□ -0.68
LINC01541-201ENST00000566582 NBPF7P0C2Y1 421 aaPredicted RBP10.79□□□□□ -0.68
LINC01541-201ENST00000566582 PDE1AP54750 535 aa10.79□□□□□ -0.68
LINC01541-201ENST00000566582 TTC5Q8N0Z6 440 aa10.79□□□□□ -0.68
LINC01541-201ENST00000566582 HYPKQ9NX55 129 aa10.79□□□□□ -0.68
LINC01541-201ENST00000566582 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.79□□□□□ -0.68
LINC01541-201ENST00000566582 C9orf78Q9NZ63 289 aaPredicted RBP10.79□□□□□ -0.68
LINC01541-201ENST00000566582 KDM4FA0A1W2PPD8 638 aa10.79□□□□□ -0.68
LINC01541-201ENST00000566582 SRGAP3O43295 1099 aa10.79□□□□□ -0.68
LINC01541-201ENST00000566582 FRAT2O75474 233 aaPredicted RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms