RNA–Protein interactions for RNA: ENST00000565887.1

SHCBP1-204, Transcript of SHC binding and spindle associated 1, humanhuman

TSL 5

Gene SHCBP1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1-204ENST00000565887 RIPK4P57078 832 aa16.58■□□□□ 0.24
SHCBP1-204ENST00000565887 CEMIPQ8WUJ3 1361 aa16.58■□□□□ 0.24
SHCBP1-204ENST00000565887 SCN11AQ9UI33 1791 aa16.58■□□□□ 0.24
SHCBP1-204ENST00000565887 LOC102724428A0A0B4J2F2 783 aa16.57■□□□□ 0.24
SHCBP1-204ENST00000565887 CCER2I3L3R5 266 aa16.57■□□□□ 0.24
SHCBP1-204ENST00000565887 SIK1P57059 783 aa16.57■□□□□ 0.24
SHCBP1-204ENST00000565887 STK32BQ9NY57 414 aa16.57■□□□□ 0.24
SHCBP1-204ENST00000565887 CCDC184Q52MB2 194 aa16.56■□□□□ 0.24
SHCBP1-204ENST00000565887 TOGARAM1Q9Y4F4 1720 aa16.56■□□□□ 0.24
SHCBP1-204ENST00000565887 TAF7Q15545 349 aaPredicted RBP16.55■□□□□ 0.24
SHCBP1-204ENST00000565887 NCBP3Q53F19 620 aaKnown RBP16.55■□□□□ 0.24
SHCBP1-204ENST00000565887 CCDC146Q8IYE0 955 aa16.55■□□□□ 0.24
SHCBP1-204ENST00000565887 TTC5Q8N0Z6 440 aa16.55■□□□□ 0.24
SHCBP1-204ENST00000565887 LRRC4BQ9NT99 713 aa16.55■□□□□ 0.24
SHCBP1-204ENST00000565887 ADAMTS7Q9UKP4 1686 aa16.55■□□□□ 0.24
SHCBP1-204ENST00000565887 RREB1Q92766 1687 aa16.54■□□□□ 0.24
SHCBP1-204ENST00000565887 BTBD11A6QL63 1104 aa16.54■□□□□ 0.24
SHCBP1-204ENST00000565887 ATP6V1AP38606 617 aa16.54■□□□□ 0.24
SHCBP1-204ENST00000565887 SLC15A2Q16348 729 aa16.54■□□□□ 0.24
SHCBP1-204ENST00000565887 MCM10Q7L590 875 aa16.54■□□□□ 0.24
SHCBP1-204ENST00000565887 VSIG10Q8N0Z9 540 aa16.54■□□□□ 0.24
SHCBP1-204ENST00000565887 RBM42Q9BTD8 480 aaKnown RBP16.54■□□□□ 0.24
SHCBP1-204ENST00000565887 BABAM1Q9NWV8 329 aa16.54■□□□□ 0.24
SHCBP1-204ENST00000565887 MRC1P22897 1456 aa16.54■□□□□ 0.24
SHCBP1-204ENST00000565887 NGEFQ8N5V2 710 aa16.53■□□□□ 0.24
SHCBP1-204ENST00000565887 TEX13AQ9BXU3 409 aaPredicted RBP16.53■□□□□ 0.24
SHCBP1-204ENST00000565887 LY75O60449 1722 aa16.53■□□□□ 0.24
SHCBP1-204ENST00000565887 CALD1Q05682 793 aaKnown RBP16.52■□□□□ 0.24
SHCBP1-204ENST00000565887 ZNF790Q6PG37 636 aa16.52■□□□□ 0.24
SHCBP1-204ENST00000565887 APAF1O14727 1248 aa16.51■□□□□ 0.23
SHCBP1-204ENST00000565887 PTCD1O75127 700 aaKnown RBP16.51■□□□□ 0.23
SHCBP1-204ENST00000565887 NEUROD2Q15784 382 aa16.51■□□□□ 0.23
SHCBP1-204ENST00000565887 FLAD1Q8NFF5 587 aa16.51■□□□□ 0.23
SHCBP1-204ENST00000565887 DCTN1Q14203 1278 aa16.5■□□□□ 0.23
SHCBP1-204ENST00000565887 R3HDM1Q15032 1099 aaKnown RBP16.5■□□□□ 0.23
SHCBP1-204ENST00000565887 RC3H1Q5TC82 1133 aaKnown RBP16.5■□□□□ 0.23
SHCBP1-204ENST00000565887 AKT1S1Q96B36 256 aa16.5■□□□□ 0.23
SHCBP1-204ENST00000565887 FMNL2Q96PY5 1086 aa16.5■□□□□ 0.23
SHCBP1-204ENST00000565887 TFCP2L1Q9NZI6 479 aa16.5■□□□□ 0.23
SHCBP1-204ENST00000565887 NUP188Q5SRE5 1749 aa16.5■□□□□ 0.23
SHCBP1-204ENST00000565887 VIRMAQ69YN4 1812 aaKnown RBP16.49■□□□□ 0.23
SHCBP1-204ENST00000565887 SLC39A6Q13433 755 aa16.49■□□□□ 0.23
SHCBP1-204ENST00000565887 FAM9BQ8IZU0 186 aa16.49■□□□□ 0.23
SHCBP1-204ENST00000565887 ZNF831Q5JPB2 1677 aa16.49■□□□□ 0.23
SHCBP1-204ENST00000565887 KCNQ4P56696 695 aa16.48■□□□□ 0.23
SHCBP1-204ENST00000565887 CCDC27Q2M243 656 aa16.48■□□□□ 0.23
SHCBP1-204ENST00000565887 AK7Q96M32 723 aa16.48■□□□□ 0.23
SHCBP1-204ENST00000565887 DLG5Q8TDM6 1919 aa16.47■□□□□ 0.23
SHCBP1-204ENST00000565887 STARD3NLO95772 234 aa16.47■□□□□ 0.23
SHCBP1-204ENST00000565887 SLC16A10Q8TF71 515 aa16.47■□□□□ 0.23
SHCBP1-204ENST00000565887 TRIM35Q9UPQ4 493 aa16.47■□□□□ 0.23
SHCBP1-204ENST00000565887 RRP7AQ9Y3A4 280 aaKnown RBP16.47■□□□□ 0.23
SHCBP1-204ENST00000565887 PSDA5PKW4 1024 aaPredicted RBP16.46■□□□□ 0.23
SHCBP1-204ENST00000565887 ITPK1Q13572 414 aa16.46■□□□□ 0.23
SHCBP1-204ENST00000565887 SLC4A9Q96Q91 983 aa16.46■□□□□ 0.23
SHCBP1-204ENST00000565887 ANO8Q9HCE9 1232 aaPredicted RBP16.46■□□□□ 0.23
SHCBP1-204ENST00000565887 CNTNAP4Q9C0A0 1308 aa16.45■□□□□ 0.22
SHCBP1-204ENST00000565887 ZNF496Q96IT1 587 aaPredicted RBP16.45■□□□□ 0.22
SHCBP1-204ENST00000565887 SIPA1L3O60292 1781 aaPredicted RBP16.44■□□□□ 0.22
SHCBP1-204ENST00000565887 HEG1Q9ULI3 1381 aa16.44■□□□□ 0.22
SHCBP1-204ENST00000565887 SNRPA1P09661 255 aaKnown RBP16.44■□□□□ 0.22
SHCBP1-204ENST00000565887 ADRA2BP18089 450 aa16.44■□□□□ 0.22
SHCBP1-204ENST00000565887 SSFA2P28290 1259 aa16.44■□□□□ 0.22
SHCBP1-204ENST00000565887 MIER1Q8N108 512 aa16.44■□□□□ 0.22
SHCBP1-204ENST00000565887 LINC00116Q8NCU8 138 aa16.44■□□□□ 0.22
SHCBP1-204ENST00000565887 TSPYL4Q9UJ04 414 aa16.44■□□□□ 0.22
SHCBP1-204ENST00000565887 RTCBQ9Y3I0 505 aaKnown RBP16.44■□□□□ 0.22
SHCBP1-204ENST00000565887 CHL1O00533 1208 aa16.43■□□□□ 0.22
SHCBP1-204ENST00000565887 RPS6KA4O75676 772 aa16.43■□□□□ 0.22
SHCBP1-204ENST00000565887 ZNF827Q17R98 1081 aa16.43■□□□□ 0.22
SHCBP1-204ENST00000565887 CFAP44Q96MT7 982 aa16.43■□□□□ 0.22
SHCBP1-204ENST00000565887 THUMPD2Q9BTF0 503 aaKnown RBP16.43■□□□□ 0.22
SHCBP1-204ENST00000565887 PAPPAQ13219 1627 aa16.43■□□□□ 0.22
SHCBP1-204ENST00000565887 CYP19A1P11511 503 aaPredicted RBP16.42■□□□□ 0.22
SHCBP1-204ENST00000565887 GNAI1P63096 354 aa16.42■□□□□ 0.22
SHCBP1-204ENST00000565887 TRAPPC3LQ5T215 181 aa16.42■□□□□ 0.22
SHCBP1-204ENST00000565887 DNAJC10Q8IXB1 793 aa16.42■□□□□ 0.22
SHCBP1-204ENST00000565887 C5P01031 1676 aa16.42■□□□□ 0.22
SHCBP1-204ENST00000565887 TAF1LQ8IZX4 1826 aa16.42■□□□□ 0.22
SHCBP1-204ENST00000565887 GNPATO15228 680 aa16.41■□□□□ 0.22
SHCBP1-204ENST00000565887 CRKLP46109 303 aaKnown RBP16.41■□□□□ 0.22
SHCBP1-204ENST00000565887 CHMP4AQ9BY43 222 aa16.41■□□□□ 0.22
SHCBP1-204ENST00000565887 CCDC87Q9NVE4 849 aa16.41■□□□□ 0.22
SHCBP1-204ENST00000565887 IFT57Q9NWB7 429 aa16.41■□□□□ 0.22
SHCBP1-204ENST00000565887 MIS18AQ9NYP9 233 aa16.41■□□□□ 0.22
SHCBP1-204ENST00000565887 KCPQ6ZWJ8 1503 aa16.4■□□□□ 0.22
SHCBP1-204ENST00000565887 C4BP0C0L5 1744 aa16.4■□□□□ 0.22
SHCBP1-204ENST00000565887 MSH5O43196 834 aa16.4■□□□□ 0.22
SHCBP1-204ENST00000565887 KCNQ3O43525 872 aa16.4■□□□□ 0.22
SHCBP1-204ENST00000565887 EIF4A1P60842 406 aaKnown RBP16.4■□□□□ 0.22
SHCBP1-204ENST00000565887 NPM2Q86SE8 214 aaKnown RBP16.4■□□□□ 0.22
SHCBP1-204ENST00000565887 WDR63Q8IWG1 891 aa16.4■□□□□ 0.22
SHCBP1-204ENST00000565887 WWC1Q8IX03 1113 aa16.4■□□□□ 0.22
SHCBP1-204ENST00000565887 MTFR1LQ9H019 292 aa16.4■□□□□ 0.22
SHCBP1-204ENST00000565887 SPON1Q9HCB6 807 aa16.4■□□□□ 0.22
SHCBP1-204ENST00000565887 IL16Q14005 1332 aa16.4■□□□□ 0.22
SHCBP1-204ENST00000565887 PNPLA7Q6ZV29 1317 aa16.4■□□□□ 0.22
SHCBP1-204ENST00000565887 CICQ96RK0 1608 aaPredicted RBP16.39■□□□□ 0.21
SHCBP1-204ENST00000565887 LAS1LQ9Y4W2 734 aaKnown RBP16.39■□□□□ 0.21
SHCBP1-204ENST00000565887 UBR2Q8IWV8 1755 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms