RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 GOLGA2Q08379 1002 aa26.92■■□□□ 1.9
CLN3-212ENST00000564574 TAF7Q15545 349 aaPredicted RBP26.92■■□□□ 1.9
CLN3-212ENST00000564574 FAM182BQ5T319 152 aa26.92■■□□□ 1.9
CLN3-212ENST00000564574 IFT57Q9NWB7 429 aa26.92■■□□□ 1.9
CLN3-212ENST00000564574 TMOD3Q9NYL9 352 aa26.92■■□□□ 1.9
CLN3-212ENST00000564574 KDM3BQ7LBC6 1761 aa26.92■■□□□ 1.9
CLN3-212ENST00000564574 GNAI1P63096 354 aa26.91■■□□□ 1.9
CLN3-212ENST00000564574 PAPPAQ13219 1627 aa26.9■■□□□ 1.9
CLN3-212ENST00000564574 NFATC2IPQ8NCF5 419 aa26.9■■□□□ 1.9
CLN3-212ENST00000564574 ACSBG1Q96GR2 724 aa26.9■■□□□ 1.9
CLN3-212ENST00000564574 CFAP44Q96MT7 982 aa26.9■■□□□ 1.9
CLN3-212ENST00000564574 PRIM1P49642 420 aaKnown RBP26.89■■□□□ 1.9
CLN3-212ENST00000564574 ZNF853P0CG23 659 aa26.88■■□□□ 1.89
CLN3-212ENST00000564574 BTAF1O14981 1849 aa26.88■■□□□ 1.89
CLN3-212ENST00000564574 E9PSI1 815 aa26.87■■□□□ 1.89
CLN3-212ENST00000564574 SYTL4Q96C24 671 aaPredicted RBP26.87■■□□□ 1.89
CLN3-212ENST00000564574 BTBD11A6QL63 1104 aa26.86■■□□□ 1.89
CLN3-212ENST00000564574 CHL1O00533 1208 aa26.86■■□□□ 1.89
CLN3-212ENST00000564574 PIGBQ92521 554 aa26.86■■□□□ 1.89
CLN3-212ENST00000564574 MYH16Q9H6N6 1097 aa26.86■■□□□ 1.89
CLN3-212ENST00000564574 LAS1LQ9Y4W2 734 aaKnown RBP26.85■■□□□ 1.89
CLN3-212ENST00000564574 UBR2Q8IWV8 1755 aa26.84■■□□□ 1.89
CLN3-212ENST00000564574 SLFN5Q08AF3 891 aa26.84■■□□□ 1.89
CLN3-212ENST00000564574 BCL11BQ9C0K0 894 aaPredicted RBP26.84■■□□□ 1.89
CLN3-212ENST00000564574 TSPYL4Q9UJ04 414 aa26.84■■□□□ 1.89
CLN3-212ENST00000564574 KCNQ2O43526 872 aa26.83■■□□□ 1.89
CLN3-212ENST00000564574 SPINK5Q9NQ38 1064 aaPredicted RBP26.81■■□□□ 1.88
CLN3-212ENST00000564574 MBIPQ9NS73 344 aa26.81■■□□□ 1.88
CLN3-212ENST00000564574 TNS1Q9HBL0 1735 aaKnown RBP26.8■■□□□ 1.88
CLN3-212ENST00000564574 ZNF790Q6PG37 636 aa26.8■■□□□ 1.88
CLN3-212ENST00000564574 TRMT2AQ8IZ69 625 aaKnown RBP26.8■■□□□ 1.88
CLN3-212ENST00000564574 TTC5Q8N0Z6 440 aa26.8■■□□□ 1.88
CLN3-212ENST00000564574 CDCA7LQ96GN5 454 aa26.8■■□□□ 1.88
CLN3-212ENST00000564574 SMARCC1Q92922 1105 aaPredicted RBP26.79■■□□□ 1.88
CLN3-212ENST00000564574 MIS18AQ9NYP9 233 aa26.79■■□□□ 1.88
CLN3-212ENST00000564574 FANCIQ9NVI1 1328 aa26.79■■□□□ 1.88
CLN3-212ENST00000564574 ATG3Q9NT62 314 aa26.78■■□□□ 1.88
CLN3-212ENST00000564574 TRIM37O94972 964 aa26.77■■□□□ 1.88
CLN3-212ENST00000564574 SLC39A6Q13433 755 aa26.77■■□□□ 1.88
CLN3-212ENST00000564574 KCPQ6ZWJ8 1503 aa26.76■■□□□ 1.87
CLN3-212ENST00000564574 TSR2Q969E8 191 aaKnown RBP26.76■■□□□ 1.87
CLN3-212ENST00000564574 ASAP1Q9ULH1 1129 aa26.76■■□□□ 1.87
CLN3-212ENST00000564574 LY75O60449 1722 aa26.76■■□□□ 1.87
CLN3-212ENST00000564574 DUSP27Q5VZP5 1158 aa26.75■■□□□ 1.87
CLN3-212ENST00000564574 ZNF831Q5JPB2 1677 aa26.75■■□□□ 1.87
CLN3-212ENST00000564574 RGPD3A6NKT7 1758 aaPredicted RBP26.74■■□□□ 1.87
CLN3-212ENST00000564574 RGPD4Q7Z3J3 1758 aa26.74■■□□□ 1.87
CLN3-212ENST00000564574 EIF4A1P60842 406 aaKnown RBP26.74■■□□□ 1.87
CLN3-212ENST00000564574 PTF1AQ7RTS3 328 aa26.74■■□□□ 1.87
CLN3-212ENST00000564574 PALLDQ8WX93 1383 aa26.73■■□□□ 1.87
CLN3-212ENST00000564574 CICQ96RK0 1608 aaPredicted RBP26.73■■□□□ 1.87
CLN3-212ENST00000564574 KCNQ3O43525 872 aa26.73■■□□□ 1.87
CLN3-212ENST00000564574 FMNL2Q96PY5 1086 aa26.73■■□□□ 1.87
CLN3-212ENST00000564574 HEG1Q9ULI3 1381 aa26.71■■□□□ 1.87
CLN3-212ENST00000564574 SOS1Q07889 1333 aaPredicted RBP26.7■■□□□ 1.87
CLN3-212ENST00000564574 VSIG10Q8N0Z9 540 aa26.7■■□□□ 1.86
CLN3-212ENST00000564574 ZNF496Q96IT1 587 aaPredicted RBP26.7■■□□□ 1.86
CLN3-212ENST00000564574 LAMB4A4D0S4 1761 aa26.7■■□□□ 1.86
CLN3-212ENST00000564574 CCDC125Q86Z20 511 aa26.69■■□□□ 1.86
CLN3-212ENST00000564574 PLSCR1O15162 318 aa26.68■■□□□ 1.86
CLN3-212ENST00000564574 HOXB7P09629 217 aa26.68■■□□□ 1.86
CLN3-212ENST00000564574 EXOSC9Q06265 439 aaKnown RBP26.68■■□□□ 1.86
CLN3-212ENST00000564574 C5P01031 1676 aa26.68■■□□□ 1.86
CLN3-212ENST00000564574 PTCD1O75127 700 aaKnown RBP26.67■■□□□ 1.86
CLN3-212ENST00000564574 APBA3O96018 575 aa26.67■■□□□ 1.86
CLN3-212ENST00000564574 RBM42Q9BTD8 480 aaKnown RBP26.67■■□□□ 1.86
CLN3-212ENST00000564574 TJP1Q07157 1748 aa26.67■■□□□ 1.86
CLN3-212ENST00000564574 SNRPA1P09661 255 aaKnown RBP26.66■■□□□ 1.86
CLN3-212ENST00000564574 CT47B1P0C2W7 299 aaPredicted RBP26.66■■□□□ 1.86
CLN3-212ENST00000564574 SF3B2Q13435 895 aaKnown RBP26.66■■□□□ 1.86
CLN3-212ENST00000564574 LOC102724428A0A0B4J2F2 783 aa26.65■■□□□ 1.86
CLN3-212ENST00000564574 GIGYF1O75420 1035 aaPredicted RBP26.65■■□□□ 1.86
CLN3-212ENST00000564574 SIK1P57059 783 aa26.65■■□□□ 1.86
CLN3-212ENST00000564574 TEX13AQ9BXU3 409 aaPredicted RBP26.65■■□□□ 1.86
CLN3-212ENST00000564574 TWISTNBQ3B726 338 aaPredicted RBP26.64■■□□□ 1.86
CLN3-212ENST00000564574 C8orf58Q8NAV2 365 aa26.64■■□□□ 1.86
CLN3-212ENST00000564574 CHMP4AQ9BY43 222 aa26.64■■□□□ 1.86
CLN3-212ENST00000564574 TAF1LQ8IZX4 1826 aa26.63■■□□□ 1.85
CLN3-212ENST00000564574 COL5A3P25940 1745 aaPredicted RBP26.63■■□□□ 1.85
CLN3-212ENST00000564574 HMGB2P26583 209 aaKnown RBP26.63■■□□□ 1.85
CLN3-212ENST00000564574 KRT24Q2M2I5 525 aa26.63■■□□□ 1.85
CLN3-212ENST00000564574 EP400Q96L91 3159 aa26.61■■□□□ 1.85
CLN3-212ENST00000564574 ATP6V1AP38606 617 aa26.61■■□□□ 1.85
CLN3-212ENST00000564574 SLC27A3Q5K4L6 730 aa26.61■■□□□ 1.85
CLN3-212ENST00000564574 SLC4A9Q96Q91 983 aa26.61■■□□□ 1.85
CLN3-212ENST00000564574 VAMP4O75379 141 aa26.6■■□□□ 1.85
CLN3-212ENST00000564574 BAG6P46379 1132 aa26.6■■□□□ 1.85
CLN3-212ENST00000564574 TSPYL6Q8N831 410 aa26.6■■□□□ 1.85
CLN3-212ENST00000564574 ZNF428Q96B54 188 aa26.6■■□□□ 1.85
CLN3-212ENST00000564574 CCNL1Q9UK58 526 aaPredicted RBP26.6■■□□□ 1.85
CLN3-212ENST00000564574 CACNA1FO60840 1977 aa26.6■■□□□ 1.85
CLN3-212ENST00000564574 ELL2O00472 640 aaPredicted RBP26.59■■□□□ 1.85
CLN3-212ENST00000564574 DNAJC10Q8IXB1 793 aa26.57■■□□□ 1.84
CLN3-212ENST00000564574 RREB1Q92766 1687 aa26.57■■□□□ 1.84
CLN3-212ENST00000564574 PRAMEF22A3QJZ6 481 aa26.56■■□□□ 1.84
CLN3-212ENST00000564574 STARD3NLO95772 234 aa26.56■■□□□ 1.84
CLN3-212ENST00000564574 TXNRD1Q16881 649 aa26.56■■□□□ 1.84
CLN3-212ENST00000564574 ITPK1Q13572 414 aa26.55■■□□□ 1.84
CLN3-212ENST00000564574 HDGFL1Q5TGJ6 251 aa26.55■■□□□ 1.84
CLN3-212ENST00000564574 USP16Q9Y5T5 823 aa26.55■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms