RNA–Protein interactions for RNA: ENST00000564387.5

USB1-209, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-209ENST00000564387 CCNL1Q9UK58 526 aaPredicted RBP23.03■■□□□ 1.28
USB1-209ENST00000564387 HMGB2P26583 209 aaKnown RBP23.02■■□□□ 1.28
USB1-209ENST00000564387 KCNQ4P56696 695 aa23.01■■□□□ 1.27
USB1-209ENST00000564387 LOC102724428A0A0B4J2F2 783 aa23■■□□□ 1.27
USB1-209ENST00000564387 HTATSF1O43719 755 aaKnown RBP23■■□□□ 1.27
USB1-209ENST00000564387 SIK1P57059 783 aa23■■□□□ 1.27
USB1-209ENST00000564387 STK32BQ9NY57 414 aa23■■□□□ 1.27
USB1-209ENST00000564387 TAF1LQ8IZX4 1826 aa23■■□□□ 1.27
USB1-209ENST00000564387 SRCAPQ6ZRS2 3230 aa22.99■■□□□ 1.27
USB1-209ENST00000564387 ANP32CO43423 234 aa22.99■■□□□ 1.27
USB1-209ENST00000564387 ZNF827Q17R98 1081 aa22.99■■□□□ 1.27
USB1-209ENST00000564387 C5P01031 1676 aa22.98■■□□□ 1.27
USB1-209ENST00000564387 QSER1Q2KHR3 1735 aa22.98■■□□□ 1.27
USB1-209ENST00000564387 SIPA1L3O60292 1781 aaPredicted RBP22.98■■□□□ 1.27
USB1-209ENST00000564387 CASZ1Q86V15 1759 aa22.97■■□□□ 1.27
USB1-209ENST00000564387 SLC4A9Q96Q91 983 aa22.97■■□□□ 1.27
USB1-209ENST00000564387 ADAMTS8Q9UP79 889 aa22.97■■□□□ 1.27
USB1-209ENST00000564387 CICQ96RK0 1608 aaPredicted RBP22.96■■□□□ 1.27
USB1-209ENST00000564387 NEFMP07197 916 aa22.95■■□□□ 1.26
USB1-209ENST00000564387 NFE2L2Q16236 605 aa22.95■■□□□ 1.26
USB1-209ENST00000564387 CCDC184Q52MB2 194 aa22.95■■□□□ 1.26
USB1-209ENST00000564387 ITPK1Q13572 414 aa22.94■■□□□ 1.26
USB1-209ENST00000564387 WDR43Q15061 677 aaKnown RBP eCLIP22.94■■□□□ 1.26
USB1-209ENST00000564387 DLG5Q8TDM6 1919 aa22.94■■□□□ 1.26
USB1-209ENST00000564387 C4BP0C0L5 1744 aa22.93■■□□□ 1.26
USB1-209ENST00000564387 MAPK8IP3Q9UPT6 1336 aa22.92■■□□□ 1.26
USB1-209ENST00000564387 ATP6V1AP38606 617 aa22.92■■□□□ 1.26
USB1-209ENST00000564387 PDGFDQ9GZP0 370 aaPredicted RBP22.92■■□□□ 1.26
USB1-209ENST00000564387 LRP5O75197 1615 aa22.92■■□□□ 1.26
USB1-209ENST00000564387 KCPQ6ZWJ8 1503 aa22.92■■□□□ 1.26
USB1-209ENST00000564387 TUBGCP6Q96RT7 1819 aa22.92■■□□□ 1.26
USB1-209ENST00000564387 UBR2Q8IWV8 1755 aa22.91■■□□□ 1.26
USB1-209ENST00000564387 TEFQ10587 303 aa22.91■■□□□ 1.26
USB1-209ENST00000564387 LINC00116Q8NCU8 138 aa22.91■■□□□ 1.26
USB1-209ENST00000564387 RTF1Q92541 710 aaKnown RBP22.91■■□□□ 1.26
USB1-209ENST00000564387 RUNDC1Q96C34 613 aa22.91■■□□□ 1.26
USB1-209ENST00000564387 SLC39A6Q13433 755 aa22.9■■□□□ 1.26
USB1-209ENST00000564387 MCM10Q7L590 875 aa22.9■■□□□ 1.26
USB1-209ENST00000564387 COL5A3P25940 1745 aaPredicted RBP22.9■■□□□ 1.26
USB1-209ENST00000564387 PNPLA7Q6ZV29 1317 aa22.89■■□□□ 1.26
USB1-209ENST00000564387 TMPOP42166 694 aaKnown RBP22.89■■□□□ 1.25
USB1-209ENST00000564387 PNISRQ8TF01 805 aaKnown RBP22.89■■□□□ 1.25
USB1-209ENST00000564387 RBM42Q9BTD8 480 aaKnown RBP22.89■■□□□ 1.25
USB1-209ENST00000564387 PTCD1O75127 700 aaKnown RBP22.88■■□□□ 1.25
USB1-209ENST00000564387 DCTN1Q14203 1278 aa22.88■■□□□ 1.25
USB1-209ENST00000564387 RC3H1Q5TC82 1133 aaKnown RBP22.88■■□□□ 1.25
USB1-209ENST00000564387 ZNF790Q6PG37 636 aa22.88■■□□□ 1.25
USB1-209ENST00000564387 TFCP2L1Q9NZI6 479 aa22.88■■□□□ 1.25
USB1-209ENST00000564387 TJP1Q07157 1748 aa22.88■■□□□ 1.25
USB1-209ENST00000564387 VSIG10Q8N0Z9 540 aa22.87■■□□□ 1.25
USB1-209ENST00000564387 UBR3Q6ZT12 1888 aa22.86■■□□□ 1.25
USB1-209ENST00000564387 CCDC146Q8IYE0 955 aa22.86■■□□□ 1.25
USB1-209ENST00000564387 SLC16A10Q8TF71 515 aa22.86■■□□□ 1.25
USB1-209ENST00000564387 CNTNAP4Q9C0A0 1308 aa22.85■■□□□ 1.25
USB1-209ENST00000564387 RIPK4P57078 832 aa22.85■■□□□ 1.25
USB1-209ENST00000564387 TAF7Q15545 349 aaPredicted RBP22.84■■□□□ 1.25
USB1-209ENST00000564387 AMIGO3Q86WK7 504 aa22.84■■□□□ 1.25
USB1-209ENST00000564387 FLAD1Q8NFF5 587 aa22.84■■□□□ 1.25
USB1-209ENST00000564387 COL24A1Q17RW2 1714 aa22.84■■□□□ 1.25
USB1-209ENST00000564387 BTBD11A6QL63 1104 aa22.83■■□□□ 1.25
USB1-209ENST00000564387 COL23A1Q86Y22 540 aaPredicted RBP22.83■■□□□ 1.25
USB1-209ENST00000564387 ZNF496Q96IT1 587 aaPredicted RBP22.83■■□□□ 1.25
USB1-209ENST00000564387 AK7Q96M32 723 aa22.83■■□□□ 1.25
USB1-209ENST00000564387 MRS2Q9HD23 443 aa22.83■■□□□ 1.25
USB1-209ENST00000564387 MYH14Q7Z406 1995 aaKnown RBP22.83■■□□□ 1.24
USB1-209ENST00000564387 SSFA2P28290 1259 aa22.82■■□□□ 1.24
USB1-209ENST00000564387 TTC5Q8N0Z6 440 aa22.82■■□□□ 1.24
USB1-209ENST00000564387 MTFR1LQ9H019 292 aa22.82■■□□□ 1.24
USB1-209ENST00000564387 SPON1Q9HCB6 807 aa22.82■■□□□ 1.24
USB1-209ENST00000564387 HEG1Q9ULI3 1381 aa22.81■■□□□ 1.24
USB1-209ENST00000564387 LMOD3Q0VAK6 560 aa22.81■■□□□ 1.24
USB1-209ENST00000564387 SGIP1Q9BQI5 828 aa22.81■■□□□ 1.24
USB1-209ENST00000564387 TRIM35Q9UPQ4 493 aa22.81■■□□□ 1.24
USB1-209ENST00000564387 KCNQ3O43525 872 aa22.8■■□□□ 1.24
USB1-209ENST00000564387 DNAJC10Q8IXB1 793 aa22.8■■□□□ 1.24
USB1-209ENST00000564387 THUMPD2Q9BTF0 503 aaKnown RBP22.8■■□□□ 1.24
USB1-209ENST00000564387 RPS6KA4O75676 772 aa22.79■■□□□ 1.24
USB1-209ENST00000564387 ZBTB7AO95365 584 aa22.79■■□□□ 1.24
USB1-209ENST00000564387 CYP19A1P11511 503 aaPredicted RBP22.79■■□□□ 1.24
USB1-209ENST00000564387 PTGER2P43116 358 aa22.79■■□□□ 1.24
USB1-209ENST00000564387 CRKLP46109 303 aaKnown RBP22.79■■□□□ 1.24
USB1-209ENST00000564387 FMNL2Q96PY5 1086 aa22.79■■□□□ 1.24
USB1-209ENST00000564387 KDM3BQ7LBC6 1761 aa22.78■■□□□ 1.24
USB1-209ENST00000564387 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.78■■□□□ 1.24
USB1-209ENST00000564387 GNPATO15228 680 aa22.78■■□□□ 1.24
USB1-209ENST00000564387 INTS5Q6P9B9 1019 aaKnown RBP22.78■■□□□ 1.24
USB1-209ENST00000564387 BABAM1Q9NWV8 329 aa22.78■■□□□ 1.24
USB1-209ENST00000564387 RRP7AQ9Y3A4 280 aaKnown RBP22.78■■□□□ 1.24
USB1-209ENST00000564387 ADRA2BP18089 450 aa22.77■■□□□ 1.24
USB1-209ENST00000564387 TEX13AQ9BXU3 409 aaPredicted RBP22.77■■□□□ 1.24
USB1-209ENST00000564387 APAF1O14727 1248 aa22.76■■□□□ 1.23
USB1-209ENST00000564387 RTCBQ9Y3I0 505 aaKnown RBP22.76■■□□□ 1.23
USB1-209ENST00000564387 NCBP3Q53F19 620 aaKnown RBP22.75■■□□□ 1.23
USB1-209ENST00000564387 SMIM5Q71RC9 77 aa22.75■■□□□ 1.23
USB1-209ENST00000564387 CCDC87Q9NVE4 849 aa22.75■■□□□ 1.23
USB1-209ENST00000564387 ATF5Q9Y2D1 282 aaPredicted RBP22.75■■□□□ 1.23
USB1-209ENST00000564387 NEUROD2Q15784 382 aa22.74■■□□□ 1.23
USB1-209ENST00000564387 MIS18AQ9NYP9 233 aa22.74■■□□□ 1.23
USB1-209ENST00000564387 STARD3NLO95772 234 aa22.73■■□□□ 1.23
USB1-209ENST00000564387 TRAPPC3LQ5T215 181 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms