RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 LMOD3Q0VAK6 560 aa11.58□□□□□ -0.56
VPS39-207ENST00000563692 EIF4A2Q14240 407 aaKnown RBP11.58□□□□□ -0.56
VPS39-207ENST00000563692 EYA1Q99502 592 aa11.58□□□□□ -0.56
VPS39-207ENST00000563692 IL16Q14005 1332 aa11.58□□□□□ -0.56
VPS39-207ENST00000563692 ZBTB7AO95365 584 aa11.57□□□□□ -0.56
VPS39-207ENST00000563692 NFE2L2Q16236 605 aa11.57□□□□□ -0.56
VPS39-207ENST00000563692 DCAF8L1A6NGE4 600 aa11.56□□□□□ -0.56
VPS39-207ENST00000563692 SULT6B1Q6IMI4 303 aa11.56□□□□□ -0.56
VPS39-207ENST00000563692 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.56□□□□□ -0.56
VPS39-207ENST00000563692 CCNL1Q9UK58 526 aaPredicted RBP11.56□□□□□ -0.56
VPS39-207ENST00000563692 RGPD2P0DJD1 1756 aa11.55□□□□□ -0.56
VPS39-207ENST00000563692 MPRIPQ6WCQ1 1025 aa11.55□□□□□ -0.56
VPS39-207ENST00000563692 MTFR1LQ9H019 292 aa11.55□□□□□ -0.56
VPS39-207ENST00000563692 SPINK5Q9NQ38 1064 aaPredicted RBP11.55□□□□□ -0.56
VPS39-207ENST00000563692 TRIM35Q9UPQ4 493 aa11.55□□□□□ -0.56
VPS39-207ENST00000563692 BTAF1O14981 1849 aa11.54□□□□□ -0.56
VPS39-207ENST00000563692 CYP27B1O15528 508 aa11.54□□□□□ -0.56
VPS39-207ENST00000563692 CT47B1P0C2W7 299 aaPredicted RBP11.54□□□□□ -0.56
VPS39-207ENST00000563692 IFNL2Q8IZJ0 200 aa11.54□□□□□ -0.56
VPS39-207ENST00000563692 SMARCC1Q92922 1105 aaPredicted RBP11.54□□□□□ -0.56
VPS39-207ENST00000563692 PHACTR3Q96KR7 559 aa11.54□□□□□ -0.56
VPS39-207ENST00000563692 LRRC4BQ9NT99 713 aa11.54□□□□□ -0.56
VPS39-207ENST00000563692 TFCP2L1Q9NZI6 479 aa11.54□□□□□ -0.56
VPS39-207ENST00000563692 ATF5Q9Y2D1 282 aaPredicted RBP11.54□□□□□ -0.56
VPS39-207ENST00000563692 NCAPD2Q15021 1401 aa11.53□□□□□ -0.56
VPS39-207ENST00000563692 HSP90AB1P08238 724 aaKnown RBP11.53□□□□□ -0.56
VPS39-207ENST00000563692 PLEKHO1Q53GL0 409 aaPredicted RBP11.53□□□□□ -0.56
VPS39-207ENST00000563692 PDGFDQ9GZP0 370 aaPredicted RBP11.53□□□□□ -0.56
VPS39-207ENST00000563692 IGSF1Q8N6C5 1336 aa11.53□□□□□ -0.56
VPS39-207ENST00000563692 PLEKHG2Q9H7P9 1386 aa11.53□□□□□ -0.56
VPS39-207ENST00000563692 NKX1-1Q15270 411 aaPredicted RBP11.52□□□□□ -0.57
VPS39-207ENST00000563692 ZNF827Q17R98 1081 aa11.52□□□□□ -0.57
VPS39-207ENST00000563692 AMOTQ4VCS5 1084 aa11.52□□□□□ -0.57
VPS39-207ENST00000563692 AKT1S1Q96B36 256 aa11.52□□□□□ -0.57
VPS39-207ENST00000563692 TMOD3Q9NYL9 352 aa11.52□□□□□ -0.57
VPS39-207ENST00000563692 PALLDQ8WX93 1383 aa11.52□□□□□ -0.57
VPS39-207ENST00000563692 DOT1LQ8TEK3 1739 aa11.52□□□□□ -0.57
VPS39-207ENST00000563692 MSH5O43196 834 aa11.51□□□□□ -0.57
VPS39-207ENST00000563692 PHKG2P15735 406 aa11.51□□□□□ -0.57
VPS39-207ENST00000563692 KCNQ4P56696 695 aa11.51□□□□□ -0.57
VPS39-207ENST00000563692 GNAI1P63096 354 aa11.51□□□□□ -0.57
VPS39-207ENST00000563692 SLC16A10Q8TF71 515 aa11.51□□□□□ -0.57
VPS39-207ENST00000563692 SHANK3Q9BYB0 1731 aa11.5□□□□□ -0.57
VPS39-207ENST00000563692 POLD1P28340 1107 aa11.5□□□□□ -0.57
VPS39-207ENST00000563692 C1orf141Q5JVX7 400 aa11.5□□□□□ -0.57
VPS39-207ENST00000563692 GAS2L2Q8NHY3 880 aa11.5□□□□□ -0.57
VPS39-207ENST00000563692 CANXP27824 592 aaKnown RBP11.49□□□□□ -0.57
VPS39-207ENST00000563692 PTGER2P43116 358 aa11.49□□□□□ -0.57
VPS39-207ENST00000563692 ZNF530Q6P9A1 599 aaPredicted RBP11.49□□□□□ -0.57
VPS39-207ENST00000563692 AEBP1Q8IUX7 1158 aa11.49□□□□□ -0.57
VPS39-207ENST00000563692 PIGBQ92521 554 aa11.49□□□□□ -0.57
VPS39-207ENST00000563692 RTF1Q92541 710 aaKnown RBP11.49□□□□□ -0.57
VPS39-207ENST00000563692 IFT57Q9NWB7 429 aa11.49□□□□□ -0.57
VPS39-207ENST00000563692 HTATSF1O43719 755 aaKnown RBP11.48□□□□□ -0.57
VPS39-207ENST00000563692 FLAD1Q8NFF5 587 aa11.48□□□□□ -0.57
VPS39-207ENST00000563692 ZNF428Q96B54 188 aa11.48□□□□□ -0.57
VPS39-207ENST00000563692 DCAF5Q96JK2 942 aa11.48□□□□□ -0.57
VPS39-207ENST00000563692 CCDC136Q96JN2 1154 aa11.48□□□□□ -0.57
VPS39-207ENST00000563692 AK7Q96M32 723 aa11.48□□□□□ -0.57
VPS39-207ENST00000563692 ARXQ96QS3 562 aa11.48□□□□□ -0.57
VPS39-207ENST00000563692 LAS1LQ9Y4W2 734 aaKnown RBP11.48□□□□□ -0.57
VPS39-207ENST00000563692 PNPLA7Q6ZV29 1317 aa11.48□□□□□ -0.57
VPS39-207ENST00000563692 FANCIQ9NVI1 1328 aa11.48□□□□□ -0.57
VPS39-207ENST00000563692 PAPPAQ13219 1627 aa11.48□□□□□ -0.57
VPS39-207ENST00000563692 PKD1L3Q7Z443 1732 aa11.48□□□□□ -0.57
VPS39-207ENST00000563692 CASZ1Q86V15 1759 aa11.48□□□□□ -0.57
VPS39-207ENST00000563692 KDRP35968 1356 aa11.47□□□□□ -0.57
VPS39-207ENST00000563692 LOC102724428A0A0B4J2F2 783 aa11.47□□□□□ -0.57
VPS39-207ENST00000563692 ERVV-2B6SEH9 535 aa11.47□□□□□ -0.57
VPS39-207ENST00000563692 PLIN1O60240 522 aa11.47□□□□□ -0.57
VPS39-207ENST00000563692 MS4A1P11836 297 aa11.47□□□□□ -0.57
VPS39-207ENST00000563692 RARSP54136 660 aaKnown RBP11.47□□□□□ -0.57
VPS39-207ENST00000563692 SIK1P57059 783 aa11.47□□□□□ -0.57
VPS39-207ENST00000563692 EXOSC9Q06265 439 aaKnown RBP11.47□□□□□ -0.57
VPS39-207ENST00000563692 CFAP44Q96MT7 982 aa11.47□□□□□ -0.57
VPS39-207ENST00000563692 BCAR3O75815 825 aa11.46□□□□□ -0.57
VPS39-207ENST00000563692 CABP4P57796 275 aa11.46□□□□□ -0.57
VPS39-207ENST00000563692 PDE3AQ14432 1141 aa11.46□□□□□ -0.57
VPS39-207ENST00000563692 TSR2Q969E8 191 aaKnown RBP11.46□□□□□ -0.57
VPS39-207ENST00000563692 FHDC1Q9C0D6 1143 aaPredicted RBP11.46□□□□□ -0.57
VPS39-207ENST00000563692 ATP6V1AP38606 617 aa11.45□□□□□ -0.58
VPS39-207ENST00000563692 MTHFSDQ2M296 383 aaKnown RBP11.45□□□□□ -0.58
VPS39-207ENST00000563692 KLHL34Q8N239 644 aa11.45□□□□□ -0.58
VPS39-207ENST00000563692 EXOC6Q8TAG9 804 aa11.45□□□□□ -0.58
VPS39-207ENST00000563692 ASAP1Q9ULH1 1129 aa11.45□□□□□ -0.58
VPS39-207ENST00000563692 LY75O60449 1722 aa11.44□□□□□ -0.58
VPS39-207ENST00000563692 ZNF853P0CG23 659 aa11.44□□□□□ -0.58
VPS39-207ENST00000563692 ALDH1L2Q3SY69 923 aa11.44□□□□□ -0.58
VPS39-207ENST00000563692 B4GALNT3Q6L9W6 998 aa11.44□□□□□ -0.58
VPS39-207ENST00000563692 COL23A1Q86Y22 540 aaPredicted RBP11.44□□□□□ -0.58
VPS39-207ENST00000563692 CRBNQ96SW2 442 aa11.44□□□□□ -0.58
VPS39-207ENST00000563692 SGIP1Q9BQI5 828 aa11.44□□□□□ -0.58
VPS39-207ENST00000563692 SYT17Q9BSW7 474 aa11.44□□□□□ -0.58
VPS39-207ENST00000563692 GNAT3A8MTJ3 354 aa11.43□□□□□ -0.58
VPS39-207ENST00000563692 IPO8O15397 1037 aaKnown RBP11.43□□□□□ -0.58
VPS39-207ENST00000563692 AAMPQ13685 434 aa11.43□□□□□ -0.58
VPS39-207ENST00000563692 FRAT1Q92837 279 aaPredicted RBP11.43□□□□□ -0.58
VPS39-207ENST00000563692 RBM42Q9BTD8 480 aaKnown RBP11.43□□□□□ -0.58
VPS39-207ENST00000563692 ATG3Q9NT62 314 aa11.43□□□□□ -0.58
VPS39-207ENST00000563692 GNPATO15228 680 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms