RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 SKILP12757 684 aa7.28□□□□□ -1.24
CLK3-212ENST00000563418 CKAP4Q07065 602 aaKnown RBP7.28□□□□□ -1.24
CLK3-212ENST00000563418 LMNTD2Q8IXW0 634 aa7.28□□□□□ -1.24
CLK3-212ENST00000563418 SMC1AQ14683 1233 aaKnown RBP7.28□□□□□ -1.24
CLK3-212ENST00000563418 IMMTQ16891 758 aaKnown RBP7.28□□□□□ -1.24
CLK3-212ENST00000563418 WHAMMP3Q1A5X7 153 aa7.28□□□□□ -1.24
CLK3-212ENST00000563418 AFAP1L1Q8TED9 768 aa7.28□□□□□ -1.24
CLK3-212ENST00000563418 EPB41L2O43491 1005 aaKnown RBP7.28□□□□□ -1.24
CLK3-212ENST00000563418 NSRP1Q9H0G5 558 aaKnown RBP7.28□□□□□ -1.24
CLK3-212ENST00000563418 KDM4AO75164 1064 aa7.28□□□□□ -1.24
CLK3-212ENST00000563418 WWC2Q6AWC2 1192 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 PRDM4Q9UKN5 801 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 NAP1L1P55209 391 aaKnown RBP7.27□□□□□ -1.25
CLK3-212ENST00000563418 FYCO1Q9BQS8 1478 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 TRIM29Q14134 588 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 SLMAPQ14BN4 828 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 CARMIL1Q5VZK9 1371 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 EXOC4Q96A65 974 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 VCXQ9H320 206 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 SLFNL1Q499Z3 407 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 HSP90AB4PQ58FF6 505 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 SH2B1Q9NRF2 756 aaPredicted RBP7.27□□□□□ -1.25
CLK3-212ENST00000563418 GPRASP1Q5JY77 1395 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 SRCIN1Q9C0H9 1055 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 MROH2BQ7Z745 1585 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 SRGAP3O43295 1099 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 MPNDQ8N594 471 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 ARFGAP2Q8N6H7 521 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 CCDC114Q96M63 670 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 TMX1Q9H3N1 280 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 IFFO1Q0D2I5 559 aa7.27□□□□□ -1.25
CLK3-212ENST00000563418 TTC12Q9H892 705 aaPredicted RBP7.27□□□□□ -1.25
CLK3-212ENST00000563418 MAPKBP1O60336 1514 aa7.26□□□□□ -1.25
CLK3-212ENST00000563418 MAP2K1Q02750 393 aaPredicted RBP7.26□□□□□ -1.25
CLK3-212ENST00000563418 MED4Q9NPJ6 270 aa7.26□□□□□ -1.25
CLK3-212ENST00000563418 ZBTB12Q9Y330 459 aaPredicted RBP7.26□□□□□ -1.25
CLK3-212ENST00000563418 A0A087WUV0 522 aaPredicted RBP7.26□□□□□ -1.25
CLK3-212ENST00000563418 HSF2BPO75031 334 aa7.26□□□□□ -1.25
CLK3-212ENST00000563418 ZBTB17Q13105 803 aa7.26□□□□□ -1.25
CLK3-212ENST00000563418 RGS22Q8NE09 1264 aa7.26□□□□□ -1.25
CLK3-212ENST00000563418 SCLT1Q96NL6 688 aa7.26□□□□□ -1.25
CLK3-212ENST00000563418 NUP155O75694 1391 aa7.26□□□□□ -1.25
CLK3-212ENST00000563418 ZSCAN20P17040 1043 aaPredicted RBP7.26□□□□□ -1.25
CLK3-212ENST00000563418 RASSF8Q8NHQ8 419 aa7.26□□□□□ -1.25
CLK3-212ENST00000563418 FBF1Q8TES7 1133 aa7.26□□□□□ -1.25
CLK3-212ENST00000563418 BCL2L13Q9BXK5 485 aa7.26□□□□□ -1.25
CLK3-212ENST00000563418 KANK1Q14678 1352 aa7.26□□□□□ -1.25
CLK3-212ENST00000563418 FYB1O15117 783 aa7.26□□□□□ -1.25
CLK3-212ENST00000563418 DHX16O60231 1041 aaKnown RBP7.26□□□□□ -1.25
CLK3-212ENST00000563418 CCDC27Q2M243 656 aa7.26□□□□□ -1.25
CLK3-212ENST00000563418 FAM210AQ96ND0 272 aa7.26□□□□□ -1.25
CLK3-212ENST00000563418 NAA15Q9BXJ9 866 aaKnown RBP7.26□□□□□ -1.25
CLK3-212ENST00000563418 ZFYP08048 801 aaPredicted RBP7.25□□□□□ -1.25
CLK3-212ENST00000563418 HCLS1P14317 486 aaPredicted RBP7.25□□□□□ -1.25
CLK3-212ENST00000563418 KLHL10Q6JEL2 608 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 PCMTD1Q96MG8 357 aaPredicted RBP7.25□□□□□ -1.25
CLK3-212ENST00000563418 OAS2P29728 719 aaKnown RBP7.25□□□□□ -1.25
CLK3-212ENST00000563418 SLFN5Q08AF3 891 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 SUPT6HQ7KZ85 1726 aaKnown RBP7.25□□□□□ -1.25
CLK3-212ENST00000563418 KIF4BQ2VIQ3 1234 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 CTAGE15A4D2H0 777 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 CTAGE8P0CG41 777 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 TOP1P11387 765 aaKnown RBP7.25□□□□□ -1.25
CLK3-212ENST00000563418 BRD3Q15059 726 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 CTAGE6Q86UF2 777 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 CTAGE4Q8IX94 777 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 ARID3CA6NKF2 412 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 GCOM1H8Y6P7 765 aaPredicted RBP7.25□□□□□ -1.25
CLK3-212ENST00000563418 BUB1BO60566 1050 aaPredicted RBP7.25□□□□□ -1.25
CLK3-212ENST00000563418 MYZAPP0CAP1 466 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 ZNF165P49910 485 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 CEP85LQ5SZL2 805 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 DZIP1Q86YF9 867 aaKnown RBP7.25□□□□□ -1.25
CLK3-212ENST00000563418 CERS3Q8IU89 383 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 CCDC141Q6ZP82 1450 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 ZNF365Q70YC5 407 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 CNTROBQ8N137 903 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 GPR161Q8N6U8 529 aaKnown RBP7.25□□□□□ -1.25
CLK3-212ENST00000563418 ADAMTS8Q9UP79 889 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 CAMSAP2Q08AD1 1489 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 MYO1CO00159 1063 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 MCM6Q14566 821 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 GBP7Q8N8V2 638 aaPredicted RBP7.25□□□□□ -1.25
CLK3-212ENST00000563418 LUC7L2Q9Y383 392 aaKnown RBP7.25□□□□□ -1.25
CLK3-212ENST00000563418 CYP46A1Q9Y6A2 500 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 KDM2BQ8NHM5 1336 aa7.25□□□□□ -1.25
CLK3-212ENST00000563418 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.24□□□□□ -1.25
CLK3-212ENST00000563418 RIPK4P57078 832 aa7.24□□□□□ -1.25
CLK3-212ENST00000563418 IFT74Q96LB3 600 aa7.24□□□□□ -1.25
CLK3-212ENST00000563418 CHGAP10645 457 aaKnown RBP7.24□□□□□ -1.25
CLK3-212ENST00000563418 NLRP5P59047 1200 aa7.24□□□□□ -1.25
CLK3-212ENST00000563418 RAD51AP2Q09MP3 1159 aa7.24□□□□□ -1.25
CLK3-212ENST00000563418 HDAC1Q13547 482 aaPredicted RBP7.24□□□□□ -1.25
CLK3-212ENST00000563418 TSNAXIP1Q2TAA8 658 aa7.24□□□□□ -1.25
CLK3-212ENST00000563418 CABS1Q96KC9 395 aa7.24□□□□□ -1.25
CLK3-212ENST00000563418 TRIM6Q9C030 488 aaPredicted RBP7.24□□□□□ -1.25
CLK3-212ENST00000563418 RAI14Q9P0K7 980 aa7.24□□□□□ -1.25
CLK3-212ENST00000563418 CPLX1O14810 134 aa7.24□□□□□ -1.25
CLK3-212ENST00000563418 ACTN2P35609 894 aa7.24□□□□□ -1.25
CLK3-212ENST00000563418 DTNBP1Q96EV8 351 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms