RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 FLIIQ13045 1269 aa24.01■■□□□ 1.43
SMPD3-203ENST00000563226 SPATA31A3Q5VYP0 1347 aa24.01■■□□□ 1.43
SMPD3-203ENST00000563226 ZNF335Q9H4Z2 1342 aaPredicted RBP24.01■■□□□ 1.43
SMPD3-203ENST00000563226 BRINP3Q76B58 766 aa24■■□□□ 1.43
SMPD3-203ENST00000563226 SOS1Q07889 1333 aaPredicted RBP24■■□□□ 1.43
SMPD3-203ENST00000563226 RNMTO43148 476 aaKnown RBP23.99■■□□□ 1.43
SMPD3-203ENST00000563226 EIF4A1P60842 406 aaKnown RBP23.99■■□□□ 1.43
SMPD3-203ENST00000563226 C1orf141Q5JVX7 400 aa23.99■■□□□ 1.43
SMPD3-203ENST00000563226 TEFQ10587 303 aa23.98■■□□□ 1.43
SMPD3-203ENST00000563226 CEP85Q6P2H3 762 aa23.98■■□□□ 1.43
SMPD3-203ENST00000563226 ANKRD44Q8N8A2 993 aa23.98■■□□□ 1.43
SMPD3-203ENST00000563226 FKBP5Q13451 457 aaPredicted RBP23.98■■□□□ 1.43
SMPD3-203ENST00000563226 CHRNA2Q15822 529 aa23.98■■□□□ 1.43
SMPD3-203ENST00000563226 HDGFL1Q5TGJ6 251 aa23.98■■□□□ 1.43
SMPD3-203ENST00000563226 SIPA1L3O60292 1781 aaPredicted RBP23.98■■□□□ 1.43
SMPD3-203ENST00000563226 N4BP2Q86UW6 1770 aaPredicted RBP23.97■■□□□ 1.43
SMPD3-203ENST00000563226 SLC4A3P48751 1232 aa23.96■■□□□ 1.43
SMPD3-203ENST00000563226 CCT4P50991 539 aaKnown RBP23.96■■□□□ 1.43
SMPD3-203ENST00000563226 NLRP2Q9NX02 1062 aa23.96■■□□□ 1.43
SMPD3-203ENST00000563226 BTBD11A6QL63 1104 aa23.96■■□□□ 1.43
SMPD3-203ENST00000563226 ADAMTS7Q9UKP4 1686 aa23.96■■□□□ 1.43
SMPD3-203ENST00000563226 OVOS2A0A0G2JMS6 1433 aa23.95■■□□□ 1.43
SMPD3-203ENST00000563226 DCTPP1Q9H773 170 aa23.95■■□□□ 1.42
SMPD3-203ENST00000563226 MEGF6O75095 1541 aa23.94■■□□□ 1.42
SMPD3-203ENST00000563226 PHAXQ9H814 394 aaKnown RBP23.94■■□□□ 1.42
SMPD3-203ENST00000563226 EIF2S2P20042 333 aaKnown RBP23.93■■□□□ 1.42
SMPD3-203ENST00000563226 RPAP2Q8IXW5 612 aaPredicted RBP23.93■■□□□ 1.42
SMPD3-203ENST00000563226 ABCC6O95255 1503 aa23.91■■□□□ 1.42
SMPD3-203ENST00000563226 RAPGEF4Q8WZA2 1011 aa23.91■■□□□ 1.42
SMPD3-203ENST00000563226 CSB-PGBD3P0DP91 1061 aa23.9■■□□□ 1.42
SMPD3-203ENST00000563226 SCN11AQ9UI33 1791 aa23.9■■□□□ 1.42
SMPD3-203ENST00000563226 HOXB7P09629 217 aa23.9■■□□□ 1.42
SMPD3-203ENST00000563226 TBC1D32Q96NH3 1257 aa23.9■■□□□ 1.42
SMPD3-203ENST00000563226 SLAIN2Q9P270 581 aa23.9■■□□□ 1.42
SMPD3-203ENST00000563226 CHPF2Q9P2E5 772 aa23.9■■□□□ 1.42
SMPD3-203ENST00000563226 CPDO75976 1380 aa23.9■■□□□ 1.42
SMPD3-203ENST00000563226 PXDNLA1KZ92 1463 aa23.89■■□□□ 1.42
SMPD3-203ENST00000563226 KDM6AO15550 1401 aaPredicted RBP23.88■■□□□ 1.41
SMPD3-203ENST00000563226 ANXA1P04083 346 aa23.87■■□□□ 1.41
SMPD3-203ENST00000563226 TATP17735 454 aaPredicted RBP23.87■■□□□ 1.41
SMPD3-203ENST00000563226 BMP2KLQ5H9B9 411 aa23.87■■□□□ 1.41
SMPD3-203ENST00000563226 UPF2Q9HAU5 1272 aaKnown RBP23.87■■□□□ 1.41
SMPD3-203ENST00000563226 SOS2Q07890 1332 aaPredicted RBP23.86■■□□□ 1.41
SMPD3-203ENST00000563226 MFAP1P55081 439 aaKnown RBP23.86■■□□□ 1.41
SMPD3-203ENST00000563226 BCL11AQ9H165 835 aa23.86■■□□□ 1.41
SMPD3-203ENST00000563226 PRAMEF22A3QJZ6 481 aa23.85■■□□□ 1.41
SMPD3-203ENST00000563226 GNAI2P04899 355 aa23.85■■□□□ 1.41
SMPD3-203ENST00000563226 NBR1Q14596 966 aa23.85■■□□□ 1.41
SMPD3-203ENST00000563226 C16orf71Q8IYS4 520 aaPredicted RBP23.85■■□□□ 1.41
SMPD3-203ENST00000563226 HEG1Q9ULI3 1381 aa23.85■■□□□ 1.41
SMPD3-203ENST00000563226 PHKG2P15735 406 aa23.85■■□□□ 1.41
SMPD3-203ENST00000563226 PKD1L3Q7Z443 1732 aa23.84■■□□□ 1.41
SMPD3-203ENST00000563226 ABCA3Q99758 1704 aa23.84■■□□□ 1.41
SMPD3-203ENST00000563226 APBB1O00213 710 aa23.84■■□□□ 1.41
SMPD3-203ENST00000563226 SMARCA5O60264 1052 aaPredicted RBP23.84■■□□□ 1.41
SMPD3-203ENST00000563226 GIGYF1O75420 1035 aaPredicted RBP23.83■■□□□ 1.41
SMPD3-203ENST00000563226 PLEKHM2Q8IWE5 1019 aa23.83■■□□□ 1.41
SMPD3-203ENST00000563226 OTUD7AQ8TE49 926 aaPredicted RBP23.83■■□□□ 1.41
SMPD3-203ENST00000563226 GNAI3P08754 354 aa23.82■■□□□ 1.4
SMPD3-203ENST00000563226 DAXXQ9UER7 740 aaPredicted RBP23.82■■□□□ 1.4
SMPD3-203ENST00000563226 SPG7Q9UQ90 795 aa23.82■■□□□ 1.4
SMPD3-203ENST00000563226 USP44Q9H0E7 712 aa23.82■■□□□ 1.4
SMPD3-203ENST00000563226 C5P01031 1676 aa23.81■■□□□ 1.4
SMPD3-203ENST00000563226 HMMRO75330 724 aa23.8■■□□□ 1.4
SMPD3-203ENST00000563226 GSPT1P15170 499 aaKnown RBP23.8■■□□□ 1.4
SMPD3-203ENST00000563226 PROSER3Q2NL68 480 aa23.8■■□□□ 1.4
SMPD3-203ENST00000563226 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.8■■□□□ 1.4
SMPD3-203ENST00000563226 CYP27B1O15528 508 aa23.8■■□□□ 1.4
SMPD3-203ENST00000563226 SLC39A6Q13433 755 aa23.8■■□□□ 1.4
SMPD3-203ENST00000563226 SLC52A2Q9HAB3 445 aa23.8■■□□□ 1.4
SMPD3-203ENST00000563226 LRRFIP2Q9Y608 721 aaKnown RBP23.8■■□□□ 1.4
SMPD3-203ENST00000563226 ADCY9O60503 1353 aa23.79■■□□□ 1.4
SMPD3-203ENST00000563226 PNMA6EA0A0J9YXQ4 647 aa23.79■■□□□ 1.4
SMPD3-203ENST00000563226 PI4KAP2A4QPH2 592 aa23.79■■□□□ 1.4
SMPD3-203ENST00000563226 PI4KAP1Q8N8J0 262 aa23.79■■□□□ 1.4
SMPD3-203ENST00000563226 C22orf23Q9BZE7 217 aa23.79■■□□□ 1.4
SMPD3-203ENST00000563226 PRDM11Q9NQV5 511 aa23.79■■□□□ 1.4
SMPD3-203ENST00000563226 IFNL2Q8IZJ0 200 aa23.79■■□□□ 1.4
SMPD3-203ENST00000563226 NHSL1Q5SYE7 1610 aa23.78■■□□□ 1.4
SMPD3-203ENST00000563226 DBF4Q9UBU7 674 aaPredicted RBP23.78■■□□□ 1.4
SMPD3-203ENST00000563226 NFATC2IPQ8NCF5 419 aa23.77■■□□□ 1.4
SMPD3-203ENST00000563226 DNAAF4Q8WXU2 420 aa23.77■■□□□ 1.4
SMPD3-203ENST00000563226 CHMP4AQ9BY43 222 aa23.77■■□□□ 1.4
SMPD3-203ENST00000563226 SRCIN1Q9C0H9 1055 aa23.77■■□□□ 1.4
SMPD3-203ENST00000563226 EXOC6BQ9Y2D4 811 aa23.77■■□□□ 1.4
SMPD3-203ENST00000563226 MRC1P22897 1456 aa23.76■■□□□ 1.39
SMPD3-203ENST00000563226 ATP8B2P98198 1209 aa23.76■■□□□ 1.39
SMPD3-203ENST00000563226 BEND3Q5T5X7 828 aa23.76■■□□□ 1.39
SMPD3-203ENST00000563226 ZNF790Q6PG37 636 aa23.76■■□□□ 1.39
SMPD3-203ENST00000563226 UBTFL1P0CB47 393 aaPredicted RBP23.75■■□□□ 1.39
SMPD3-203ENST00000563226 TTC22Q5TAA0 569 aa23.75■■□□□ 1.39
SMPD3-203ENST00000563226 TBC1D9Q6ZT07 1266 aa23.75■■□□□ 1.39
SMPD3-203ENST00000563226 COL5A2P05997 1499 aaPredicted RBP23.75■■□□□ 1.39
SMPD3-203ENST00000563226 WDR17Q8IZU2 1322 aa23.75■■□□□ 1.39
SMPD3-203ENST00000563226 PLEKHG2Q9H7P9 1386 aa23.75■■□□□ 1.39
SMPD3-203ENST00000563226 PARP4Q9UKK3 1724 aaKnown RBP23.74■■□□□ 1.39
SMPD3-203ENST00000563226 DCAF5Q96JK2 942 aa23.72■■□□□ 1.39
SMPD3-203ENST00000563226 NBPF7P0C2Y1 421 aaPredicted RBP23.72■■□□□ 1.39
SMPD3-203ENST00000563226 TOM1L2Q6ZVM7 507 aa23.72■■□□□ 1.39
SMPD3-203ENST00000563226 PDIA6Q15084 440 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms