RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 FAM9BQ8IZU0 186 aa12.99□□□□□ -0.33
CLK3-208ENST00000562626 PIGBQ92521 554 aa12.99□□□□□ -0.33
CLK3-208ENST00000562626 RUNDC1Q96C34 613 aa12.99□□□□□ -0.33
CLK3-208ENST00000562626 DCAF5Q96JK2 942 aa12.99□□□□□ -0.33
CLK3-208ENST00000562626 THUMPD2Q9BTF0 503 aaKnown RBP12.99□□□□□ -0.33
CLK3-208ENST00000562626 UBR3Q6ZT12 1888 aa12.99□□□□□ -0.33
CLK3-208ENST00000562626 MAPK8IP3Q9UPT6 1336 aa12.98□□□□□ -0.33
CLK3-208ENST00000562626 GNAT3A8MTJ3 354 aa12.98□□□□□ -0.33
CLK3-208ENST00000562626 APBA3O96018 575 aa12.98□□□□□ -0.33
CLK3-208ENST00000562626 LAMB4A4D0S4 1761 aa12.98□□□□□ -0.33
CLK3-208ENST00000562626 QSER1Q2KHR3 1735 aa12.98□□□□□ -0.33
CLK3-208ENST00000562626 APAF1O14727 1248 aa12.97□□□□□ -0.33
CLK3-208ENST00000562626 EZH2Q15910 746 aaKnown RBP12.97□□□□□ -0.33
CLK3-208ENST00000562626 PROM2Q8N271 834 aa12.97□□□□□ -0.33
CLK3-208ENST00000562626 NFATC2IPQ8NCF5 419 aa12.97□□□□□ -0.33
CLK3-208ENST00000562626 CAMKK2Q96RR4 588 aa12.97□□□□□ -0.33
CLK3-208ENST00000562626 TRIM35Q9UPQ4 493 aa12.97□□□□□ -0.33
CLK3-208ENST00000562626 C4BP0C0L5 1744 aa12.96□□□□□ -0.33
CLK3-208ENST00000562626 ERVV-2B6SEH9 535 aa12.96□□□□□ -0.33
CLK3-208ENST00000562626 HSP90AB1P08238 724 aaKnown RBP12.96□□□□□ -0.33
CLK3-208ENST00000562626 KCNQ4P56696 695 aa12.96□□□□□ -0.33
CLK3-208ENST00000562626 NEUROD2Q15784 382 aa12.96□□□□□ -0.33
CLK3-208ENST00000562626 ASAP1Q9ULH1 1129 aa12.96□□□□□ -0.33
CLK3-208ENST00000562626 RIPK4P57078 832 aa12.95□□□□□ -0.34
CLK3-208ENST00000562626 CCDC125Q86Z20 511 aa12.95□□□□□ -0.34
CLK3-208ENST00000562626 SLC52A2Q9HAB3 445 aa12.95□□□□□ -0.34
CLK3-208ENST00000562626 ATG3Q9NT62 314 aa12.95□□□□□ -0.34
CLK3-208ENST00000562626 TMOD3Q9NYL9 352 aa12.95□□□□□ -0.34
CLK3-208ENST00000562626 C4AP0C0L4 1744 aa12.94□□□□□ -0.34
CLK3-208ENST00000562626 KCNQ3O43525 872 aa12.94□□□□□ -0.34
CLK3-208ENST00000562626 CABP4P57796 275 aa12.94□□□□□ -0.34
CLK3-208ENST00000562626 SLC39A6Q13433 755 aa12.94□□□□□ -0.34
CLK3-208ENST00000562626 SLC4A9Q96Q91 983 aa12.94□□□□□ -0.34
CLK3-208ENST00000562626 PNNQ9H307 717 aaKnown RBP12.94□□□□□ -0.34
CLK3-208ENST00000562626 LRRC4BQ9NT99 713 aa12.94□□□□□ -0.34
CLK3-208ENST00000562626 CASZ1Q86V15 1759 aa12.94□□□□□ -0.34
CLK3-208ENST00000562626 PALLDQ8WX93 1383 aa12.94□□□□□ -0.34
CLK3-208ENST00000562626 PLSCR1O15162 318 aa12.93□□□□□ -0.34
CLK3-208ENST00000562626 BAG6P46379 1132 aa12.93□□□□□ -0.34
CLK3-208ENST00000562626 NEFMP07197 916 aa12.92□□□□□ -0.34
CLK3-208ENST00000562626 SF3B2Q13435 895 aaKnown RBP12.92□□□□□ -0.34
CLK3-208ENST00000562626 TXNRD1Q16881 649 aa12.92□□□□□ -0.34
CLK3-208ENST00000562626 MIS18AQ9NYP9 233 aa12.92□□□□□ -0.34
CLK3-208ENST00000562626 LRP5O75197 1615 aa12.91□□□□□ -0.34
CLK3-208ENST00000562626 HTATSF1O43719 755 aaKnown RBP12.91□□□□□ -0.34
CLK3-208ENST00000562626 ITPK1Q13572 414 aa12.9□□□□□ -0.34
CLK3-208ENST00000562626 RTF1Q92541 710 aaKnown RBP12.9□□□□□ -0.34
CLK3-208ENST00000562626 SALL2Q9Y467 1007 aaPredicted RBP12.9□□□□□ -0.34
CLK3-208ENST00000562626 TEFQ10587 303 aa12.89□□□□□ -0.35
CLK3-208ENST00000562626 ANO8Q9HCE9 1232 aaPredicted RBP12.89□□□□□ -0.35
CLK3-208ENST00000562626 PTCD1O75127 700 aaKnown RBP12.88□□□□□ -0.35
CLK3-208ENST00000562626 COL24A1Q17RW2 1714 aa12.88□□□□□ -0.35
CLK3-208ENST00000562626 LOC102724428A0A0B4J2F2 783 aa12.87□□□□□ -0.35
CLK3-208ENST00000562626 PRAMEF22A3QJZ6 481 aa12.87□□□□□ -0.35
CLK3-208ENST00000562626 BTBD11A6QL63 1104 aa12.87□□□□□ -0.35
CLK3-208ENST00000562626 SIK1P57059 783 aa12.87□□□□□ -0.35
CLK3-208ENST00000562626 ZNF827Q17R98 1081 aa12.87□□□□□ -0.35
CLK3-208ENST00000562626 LINC00116Q8NCU8 138 aa12.87□□□□□ -0.35
CLK3-208ENST00000562626 ZNF496Q96IT1 587 aaPredicted RBP12.87□□□□□ -0.35
CLK3-208ENST00000562626 RBM42Q9BTD8 480 aaKnown RBP12.87□□□□□ -0.35
CLK3-208ENST00000562626 CCNL1Q9UK58 526 aaPredicted RBP12.87□□□□□ -0.35
CLK3-208ENST00000562626 TAF7Q15545 349 aaPredicted RBP12.86□□□□□ -0.35
CLK3-208ENST00000562626 ZNF790Q6PG37 636 aa12.86□□□□□ -0.35
CLK3-208ENST00000562626 SMIM5Q71RC9 77 aa12.86□□□□□ -0.35
CLK3-208ENST00000562626 AMIGO3Q86WK7 504 aa12.86□□□□□ -0.35
CLK3-208ENST00000562626 WWC1Q8IX03 1113 aa12.86□□□□□ -0.35
CLK3-208ENST00000562626 SMARCC1Q92922 1105 aaPredicted RBP12.86□□□□□ -0.35
CLK3-208ENST00000562626 BCORQ6W2J9 1755 aa12.85□□□□□ -0.35
CLK3-208ENST00000562626 LMOD3Q0VAK6 560 aa12.85□□□□□ -0.35
CLK3-208ENST00000562626 KRT24Q2M2I5 525 aa12.85□□□□□ -0.35
CLK3-208ENST00000562626 DNAJC10Q8IXB1 793 aa12.85□□□□□ -0.35
CLK3-208ENST00000562626 SPINK5Q9NQ38 1064 aaPredicted RBP12.85□□□□□ -0.35
CLK3-208ENST00000562626 CACNA1FO60840 1977 aa12.85□□□□□ -0.35
CLK3-208ENST00000562626 ZNF521Q96K83 1311 aa12.85□□□□□ -0.35
CLK3-208ENST00000562626 HEG1Q9ULI3 1381 aa12.84□□□□□ -0.35
CLK3-208ENST00000562626 NUP98P52948 1817 aa12.84□□□□□ -0.35
CLK3-208ENST00000562626 ZNF853P0CG23 659 aa12.84□□□□□ -0.35
CLK3-208ENST00000562626 ATP6V1AP38606 617 aa12.84□□□□□ -0.35
CLK3-208ENST00000562626 CCDC27Q2M243 656 aa12.84□□□□□ -0.35
CLK3-208ENST00000562626 PDGFDQ9GZP0 370 aaPredicted RBP12.84□□□□□ -0.35
CLK3-208ENST00000562626 PSDA5PKW4 1024 aaPredicted RBP12.83□□□□□ -0.36
CLK3-208ENST00000562626 CHL1O00533 1208 aa12.83□□□□□ -0.36
CLK3-208ENST00000562626 SLC27A3Q5K4L6 730 aa12.83□□□□□ -0.36
CLK3-208ENST00000562626 AKT1S1Q96B36 256 aa12.83□□□□□ -0.36
CLK3-208ENST00000562626 MBIPQ9NS73 344 aa12.83□□□□□ -0.36
CLK3-208ENST00000562626 LAS1LQ9Y4W2 734 aaKnown RBP12.83□□□□□ -0.36
CLK3-208ENST00000562626 EIF4A1P60842 406 aaKnown RBP12.82□□□□□ -0.36
CLK3-208ENST00000562626 TSR2Q969E8 191 aaKnown RBP12.82□□□□□ -0.36
CLK3-208ENST00000562626 TSPYL4Q9UJ04 414 aa12.82□□□□□ -0.36
CLK3-208ENST00000562626 SCN7AQ01118 1682 aa12.82□□□□□ -0.36
CLK3-208ENST00000562626 NCBP3Q53F19 620 aaKnown RBP12.81□□□□□ -0.36
CLK3-208ENST00000562626 TTC5Q8N0Z6 440 aa12.81□□□□□ -0.36
CLK3-208ENST00000562626 CFAP44Q96MT7 982 aa12.81□□□□□ -0.36
CLK3-208ENST00000562626 AFDNP55196 1824 aaKnown RBP12.81□□□□□ -0.36
CLK3-208ENST00000562626 ANKRD36CQ5JPF3 1778 aa12.8□□□□□ -0.36
CLK3-208ENST00000562626 R3HDM1Q15032 1099 aaKnown RBP12.8□□□□□ -0.36
CLK3-208ENST00000562626 SLC15A2Q16348 729 aa12.8□□□□□ -0.36
CLK3-208ENST00000562626 FMNL2Q96PY5 1086 aa12.8□□□□□ -0.36
CLK3-208ENST00000562626 USP16Q9Y5T5 823 aa12.8□□□□□ -0.36
CLK3-208ENST00000562626 CYP19A1P11511 503 aaPredicted RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms