RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 MST1RQ04912 1400 aa16.34■□□□□ 0.21
CLK3-206ENST00000562078 FAM177BA6PVY3 158 aa16.34■□□□□ 0.21
CLK3-206ENST00000562078 FOXO3O43524 673 aa16.34■□□□□ 0.21
CLK3-206ENST00000562078 NLRP6P59044 892 aa16.34■□□□□ 0.21
CLK3-206ENST00000562078 MYRIPQ8NFW9 859 aa16.34■□□□□ 0.21
CLK3-206ENST00000562078 SSH1Q8WYL5 1049 aa16.34■□□□□ 0.21
CLK3-206ENST00000562078 MARF1Q9Y4F3 1742 aaKnown RBP16.33■□□□□ 0.2
CLK3-206ENST00000562078 ZKSCAN2Q63HK3 967 aa16.33■□□□□ 0.2
CLK3-206ENST00000562078 CGNQ9P2M7 1197 aaKnown RBP16.33■□□□□ 0.2
CLK3-206ENST00000562078 SPDYE4A6NLX3 237 aa16.33■□□□□ 0.2
CLK3-206ENST00000562078 ZNF445P59923 1031 aa16.33■□□□□ 0.2
CLK3-206ENST00000562078 CAVIN1Q6NZI2 390 aaKnown RBP16.33■□□□□ 0.2
CLK3-206ENST00000562078 USP31Q70CQ4 1352 aa16.32■□□□□ 0.2
CLK3-206ENST00000562078 EIF4A2Q14240 407 aaKnown RBP16.32■□□□□ 0.2
CLK3-206ENST00000562078 ZSCAN23Q3MJ62 389 aa16.32■□□□□ 0.2
CLK3-206ENST00000562078 FTSJ3Q8IY81 847 aaKnown RBP16.32■□□□□ 0.2
CLK3-206ENST00000562078 SNX21Q969T3 373 aa16.32■□□□□ 0.2
CLK3-206ENST00000562078 MCM5P33992 734 aa16.31■□□□□ 0.2
CLK3-206ENST00000562078 PRIM1P49642 420 aaKnown RBP16.31■□□□□ 0.2
CLK3-206ENST00000562078 USP54Q70EL1 1684 aa16.31■□□□□ 0.2
CLK3-206ENST00000562078 GOLGA6L22H0YM25 854 aa16.31■□□□□ 0.2
CLK3-206ENST00000562078 CD2BP2O95400 341 aaKnown RBP16.3■□□□□ 0.2
CLK3-206ENST00000562078 AEBP1Q8IUX7 1158 aa16.3■□□□□ 0.2
CLK3-206ENST00000562078 MVPQ14764 893 aaKnown RBP16.3■□□□□ 0.2
CLK3-206ENST00000562078 DZIP1LQ8IYY4 767 aaKnown RBP16.3■□□□□ 0.2
CLK3-206ENST00000562078 BAG4O95429 457 aaKnown RBP16.29■□□□□ 0.2
CLK3-206ENST00000562078 TRIM27P14373 513 aa16.29■□□□□ 0.2
CLK3-206ENST00000562078 MAPK8IP2Q13387 824 aaPredicted RBP16.29■□□□□ 0.2
CLK3-206ENST00000562078 DNTTIP2Q5QJE6 756 aaKnown RBP16.29■□□□□ 0.2
CLK3-206ENST00000562078 RWDD1Q9H446 243 aaPredicted RBP16.29■□□□□ 0.2
CLK3-206ENST00000562078 HSP90AB2PQ58FF8 381 aa16.28■□□□□ 0.2
CLK3-206ENST00000562078 TRPM3Q9HCF6 1732 aaPredicted RBP16.28■□□□□ 0.2
CLK3-206ENST00000562078 SULT6B1Q6IMI4 303 aa16.28■□□□□ 0.2
CLK3-206ENST00000562078 LMOD2Q6P5Q4 547 aa16.28■□□□□ 0.2
CLK3-206ENST00000562078 CCDC39Q9UFE4 941 aa16.28■□□□□ 0.2
CLK3-206ENST00000562078 FAM83GA6ND36 823 aa16.27■□□□□ 0.2
CLK3-206ENST00000562078 ATF7IPQ6VMQ6 1270 aa16.27■□□□□ 0.2
CLK3-206ENST00000562078 KRT28Q7Z3Y7 464 aa16.27■□□□□ 0.2
CLK3-206ENST00000562078 NOB1Q9ULX3 412 aaKnown RBP16.27■□□□□ 0.2
CLK3-206ENST00000562078 MAP3K19Q56UN5 1328 aa16.27■□□□□ 0.2
CLK3-206ENST00000562078 RBM25P49756 843 aaKnown RBP16.27■□□□□ 0.19
CLK3-206ENST00000562078 LMOD3Q0VAK6 560 aa16.27■□□□□ 0.19
CLK3-206ENST00000562078 KIF16BQ96L93 1317 aa16.26■□□□□ 0.19
CLK3-206ENST00000562078 MCTP1Q6DN14 999 aa16.26■□□□□ 0.19
CLK3-206ENST00000562078 IFT57Q9NWB7 429 aa16.26■□□□□ 0.19
CLK3-206ENST00000562078 LTN1O94822 1766 aa16.26■□□□□ 0.19
CLK3-206ENST00000562078 GNAI1P63096 354 aa16.26■□□□□ 0.19
CLK3-206ENST00000562078 CDK11BP21127 795 aaKnown RBP16.25■□□□□ 0.19
CLK3-206ENST00000562078 DCTN1Q14203 1278 aa16.25■□□□□ 0.19
CLK3-206ENST00000562078 TAF3Q5VWG9 929 aa16.25■□□□□ 0.19
CLK3-206ENST00000562078 MBIPQ9NS73 344 aa16.25■□□□□ 0.19
CLK3-206ENST00000562078 KIAA2012Q0VF49 1180 aa16.25■□□□□ 0.19
CLK3-206ENST00000562078 ITPRIPQ8IWB1 547 aa16.25■□□□□ 0.19
CLK3-206ENST00000562078 RBM27Q9P2N5 1060 aaKnown RBP16.25■□□□□ 0.19
CLK3-206ENST00000562078 AMPHP49418 695 aa16.24■□□□□ 0.19
CLK3-206ENST00000562078 ALDH1L2Q3SY69 923 aa16.24■□□□□ 0.19
CLK3-206ENST00000562078 GAS2L2Q8NHY3 880 aa16.24■□□□□ 0.19
CLK3-206ENST00000562078 DDX17Q92841 729 aaKnown RBP16.24■□□□□ 0.19
CLK3-206ENST00000562078 FLT4P35916 1363 aa16.24■□□□□ 0.19
CLK3-206ENST00000562078 ZNF853P0CG23 659 aa16.24■□□□□ 0.19
CLK3-206ENST00000562078 CLEC17AQ6ZS10 378 aa16.24■□□□□ 0.19
CLK3-206ENST00000562078 TSPYL6Q8N831 410 aa16.24■□□□□ 0.19
CLK3-206ENST00000562078 SBNO1A3KN83 1393 aa16.24■□□□□ 0.19
CLK3-206ENST00000562078 NPHP3Q7Z494 1330 aa16.23■□□□□ 0.19
CLK3-206ENST00000562078 KIF2CQ99661 725 aa16.23■□□□□ 0.19
CLK3-206ENST00000562078 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.23■□□□□ 0.19
CLK3-206ENST00000562078 ALS2Q96Q42 1657 aa16.22■□□□□ 0.19
CLK3-206ENST00000562078 ELL2O00472 640 aaPredicted RBP16.22■□□□□ 0.19
CLK3-206ENST00000562078 U2AF2P26368 475 aaKnown RBP eCLIP16.22■□□□□ 0.19
CLK3-206ENST00000562078 GTF2F1P35269 517 aaKnown RBP eCLIP16.22■□□□□ 0.19
CLK3-206ENST00000562078 ZNF771Q7L3S4 317 aaPredicted RBP16.22■□□□□ 0.19
CLK3-206ENST00000562078 MPNDQ8N594 471 aa16.22■□□□□ 0.19
CLK3-206ENST00000562078 TMEM57Q8N5G2 664 aa16.22■□□□□ 0.19
CLK3-206ENST00000562078 RBM42Q9BTD8 480 aaKnown RBP16.22■□□□□ 0.19
CLK3-206ENST00000562078 ARHGEF10O15013 1369 aa16.22■□□□□ 0.19
CLK3-206ENST00000562078 AK9Q5TCS8 1911 aa16.22■□□□□ 0.19
CLK3-206ENST00000562078 K7ELQ4 463 aaPredicted RBP16.22■□□□□ 0.19
CLK3-206ENST00000562078 IPO8O15397 1037 aaKnown RBP16.22■□□□□ 0.19
CLK3-206ENST00000562078 PRIMPOLQ96LW4 560 aa16.22■□□□□ 0.19
CLK3-206ENST00000562078 CFAP44Q96MT7 982 aa16.22■□□□□ 0.19
CLK3-206ENST00000562078 BCL2L12Q9HB09 334 aa16.22■□□□□ 0.19
CLK3-206ENST00000562078 LMBRD1Q9NUN5 540 aa16.22■□□□□ 0.19
CLK3-206ENST00000562078 DDX19BQ9UMR2 479 aa16.22■□□□□ 0.19
CLK3-206ENST00000562078 VAMP4O75379 141 aa16.21■□□□□ 0.19
CLK3-206ENST00000562078 PTMAP06454 111 aaKnown RBP16.21■□□□□ 0.19
CLK3-206ENST00000562078 IRX5P78411 483 aaPredicted RBP16.21■□□□□ 0.19
CLK3-206ENST00000562078 ZNF428Q96B54 188 aa16.21■□□□□ 0.19
CLK3-206ENST00000562078 SLAIN2Q9P270 581 aa16.21■□□□□ 0.19
CLK3-206ENST00000562078 KIF3AQ9Y496 699 aa16.21■□□□□ 0.19
CLK3-206ENST00000562078 PDCL2Q8N4E4 241 aa16.21■□□□□ 0.18
CLK3-206ENST00000562078 RNF214Q8ND24 703 aa16.21■□□□□ 0.18
CLK3-206ENST00000562078 HMGN5P82970 282 aaKnown RBP16.2■□□□□ 0.18
CLK3-206ENST00000562078 BRINP3Q76B58 766 aa16.2■□□□□ 0.18
CLK3-206ENST00000562078 KCNH5Q8NCM2 988 aa16.2■□□□□ 0.18
CLK3-206ENST00000562078 NFAT5O94916 1531 aa16.2■□□□□ 0.18
CLK3-206ENST00000562078 TWISTNBQ3B726 338 aaPredicted RBP16.19■□□□□ 0.18
CLK3-206ENST00000562078 C17orf53Q8N3J3 647 aaPredicted RBP16.19■□□□□ 0.18
CLK3-206ENST00000562078 SYCE3A1L190 88 aa16.19■□□□□ 0.18
CLK3-206ENST00000562078 MCM10Q7L590 875 aa16.19■□□□□ 0.18
CLK3-206ENST00000562078 C8orf58Q8NAV2 365 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms