RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 USP17L21D6R901 530 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 USP17L18D6R9N7 530 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 USP17L22D6RA61 530 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 USP17L17D6RBQ6 530 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 USP17L19D6RCP7 530 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 USP17L20D6RJB6 530 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 TNFRSF10AO00220 468 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 USP17L24Q0WX57 530 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 CYP4X1Q8N118 509 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 OGFOD1Q8N543 542 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 DNAAF2Q9NVR5 837 aaKnown RBP9.56□□□□□ -0.88
LRRC28-220ENST00000561253 ADCY10Q96PN6 1610 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 CEP162Q5TB80 1403 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 UACAQ9BZF9 1416 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 GDF9O60383 454 aa9.55□□□□□ -0.88
LRRC28-220ENST00000561253 GTF2IP78347 998 aa9.55□□□□□ -0.88
LRRC28-220ENST00000561253 CRTC2Q53ET0 693 aaPredicted RBP9.55□□□□□ -0.88
LRRC28-220ENST00000561253 PPP1R26Q5T8A7 1209 aaPredicted RBP9.55□□□□□ -0.88
LRRC28-220ENST00000561253 TMPRSS4Q9NRS4 437 aa9.55□□□□□ -0.88
LRRC28-220ENST00000561253 NOVA2Q9UNW9 492 aaKnown RBP9.55□□□□□ -0.88
LRRC28-220ENST00000561253 CLIP1P30622 1438 aa9.55□□□□□ -0.88
LRRC28-220ENST00000561253 PSME1Q06323 249 aa9.54□□□□□ -0.88
LRRC28-220ENST00000561253 NNTQ13423 1086 aa9.54□□□□□ -0.88
LRRC28-220ENST00000561253 CC2D2BQ6DHV5 1058 aa9.54□□□□□ -0.88
LRRC28-220ENST00000561253 ZNF594Q96JF6 807 aaPredicted RBP9.54□□□□□ -0.88
LRRC28-220ENST00000561253 PGPEP1Q9NXJ5 209 aa9.54□□□□□ -0.88
LRRC28-220ENST00000561253 ABCC2Q92887 1545 aa9.54□□□□□ -0.88
LRRC28-220ENST00000561253 NR3C2P08235 984 aa9.53□□□□□ -0.88
LRRC28-220ENST00000561253 SCTRP47872 440 aa9.53□□□□□ -0.88
LRRC28-220ENST00000561253 ERVK-9P63128 1117 aa9.53□□□□□ -0.88
LRRC28-220ENST00000561253 CLDN10P78369 228 aa9.53□□□□□ -0.88
LRRC28-220ENST00000561253 MYT1Q01538 1121 aa9.53□□□□□ -0.88
LRRC28-220ENST00000561253 PTK7Q13308 1070 aa9.53□□□□□ -0.88
LRRC28-220ENST00000561253 ELOAQ14241 798 aaKnown RBP9.53□□□□□ -0.88
LRRC28-220ENST00000561253 CYLDQ9NQC7 956 aa9.53□□□□□ -0.88
LRRC28-220ENST00000561253 USTQ9Y2C2 406 aa9.53□□□□□ -0.88
LRRC28-220ENST00000561253 RBM19Q9Y4C8 960 aaKnown RBP9.53□□□□□ -0.88
LRRC28-220ENST00000561253 EMILIN1Q9Y6C2 1016 aa9.53□□□□□ -0.88
LRRC28-220ENST00000561253 KDM5BQ9UGL1 1544 aa9.52□□□□□ -0.88
LRRC28-220ENST00000561253 RANGAP1P46060 587 aaPredicted RBP9.52□□□□□ -0.89
LRRC28-220ENST00000561253 LARGE2Q8N3Y3 721 aa9.52□□□□□ -0.89
LRRC28-220ENST00000561253 ZNF784Q8NCA9 323 aaPredicted RBP9.52□□□□□ -0.89
LRRC28-220ENST00000561253 J3QL48 77 aa9.51□□□□□ -0.89
LRRC28-220ENST00000561253 RGS20O76081 388 aa9.51□□□□□ -0.89
LRRC28-220ENST00000561253 ANKMY2Q8IV38 441 aa9.51□□□□□ -0.89
LRRC28-220ENST00000561253 FAM200AQ8TCP9 573 aa9.51□□□□□ -0.89
LRRC28-220ENST00000561253 TRAIPQ9BWF2 469 aa9.51□□□□□ -0.89
LRRC28-220ENST00000561253 NUP153P49790 1475 aaKnown RBP9.51□□□□□ -0.89
LRRC28-220ENST00000561253 PRR20EP86478 221 aa9.5□□□□□ -0.89
LRRC28-220ENST00000561253 PRR20CP86479 221 aa9.5□□□□□ -0.89
LRRC28-220ENST00000561253 PRR20DP86480 221 aa9.5□□□□□ -0.89
LRRC28-220ENST00000561253 PRR20BP86481 221 aa9.5□□□□□ -0.89
LRRC28-220ENST00000561253 PRR20AP86496 221 aa9.5□□□□□ -0.89
LRRC28-220ENST00000561253 CCDC102BQ68D86 513 aa9.5□□□□□ -0.89
LRRC28-220ENST00000561253 STK32AQ8WU08 396 aa9.5□□□□□ -0.89
LRRC28-220ENST00000561253 TOR4AQ9NXH8 423 aa9.5□□□□□ -0.89
LRRC28-220ENST00000561253 ZMIZ1Q9ULJ6 1067 aa9.5□□□□□ -0.89
LRRC28-220ENST00000561253 KIAA1024Q9UPX6 916 aa9.5□□□□□ -0.89
LRRC28-220ENST00000561253 PCDHGA11Q9Y5H2 935 aa9.5□□□□□ -0.89
LRRC28-220ENST00000561253 FMN1Q68DA7 1419 aa9.49□□□□□ -0.89
LRRC28-220ENST00000561253 ZBTB7BO15156 539 aaPredicted RBP9.49□□□□□ -0.89
LRRC28-220ENST00000561253 DPYDQ12882 1025 aa9.49□□□□□ -0.89
LRRC28-220ENST00000561253 TMEM164Q5U3C3 297 aa9.49□□□□□ -0.89
LRRC28-220ENST00000561253 TRIM67Q6ZTA4 783 aa9.49□□□□□ -0.89
LRRC28-220ENST00000561253 SIX5Q8N196 739 aa9.49□□□□□ -0.89
LRRC28-220ENST00000561253 TPCN2Q8NHX9 752 aa9.49□□□□□ -0.89
LRRC28-220ENST00000561253 ATP10BO94823 1461 aa9.48□□□□□ -0.89
LRRC28-220ENST00000561253 MAPKBP1O60336 1514 aa9.48□□□□□ -0.89
LRRC28-220ENST00000561253 LILRA1O75019 489 aa9.48□□□□□ -0.89
LRRC28-220ENST00000561253 CYP2U1Q7Z449 544 aa9.48□□□□□ -0.89
LRRC28-220ENST00000561253 OSBPL3Q9H4L5 887 aa9.48□□□□□ -0.89
LRRC28-220ENST00000561253 TTBK1Q5TCY1 1321 aaPredicted RBP9.48□□□□□ -0.89
LRRC28-220ENST00000561253 RAPGEF6Q8TEU7 1601 aa9.48□□□□□ -0.89
LRRC28-220ENST00000561253 SMPD1P17405 629 aa9.47□□□□□ -0.89
LRRC28-220ENST00000561253 CASKIN1Q8WXD9 1431 aa9.47□□□□□ -0.89
LRRC28-220ENST00000561253 CARNS1A5YM72 827 aa9.46□□□□□ -0.9
LRRC28-220ENST00000561253 TMEM88BA6NKF7 163 aa9.46□□□□□ -0.9
LRRC28-220ENST00000561253 ZIC2O95409 532 aaPredicted RBP9.46□□□□□ -0.9
LRRC28-220ENST00000561253 SEC13P55735 322 aa9.46□□□□□ -0.9
LRRC28-220ENST00000561253 WDR4P57081 412 aaKnown RBP9.46□□□□□ -0.9
LRRC28-220ENST00000561253 ADD1P35611 737 aaKnown RBP9.45□□□□□ -0.9
LRRC28-220ENST00000561253 ITPKCQ96DU7 683 aa9.45□□□□□ -0.9
LRRC28-220ENST00000561253 PDZRN3Q9UPQ7 1066 aa9.45□□□□□ -0.9
LRRC28-220ENST00000561253 PCF11O94913 1555 aaKnown RBP9.45□□□□□ -0.9
LRRC28-220ENST00000561253 ZCCHC11Q5TAX3 1644 aaKnown RBP9.45□□□□□ -0.9
LRRC28-220ENST00000561253 SFI1A8K8P3 1242 aa9.44□□□□□ -0.9
LRRC28-220ENST00000561253 DKK1O94907 266 aa9.44□□□□□ -0.9
LRRC28-220ENST00000561253 ASXL2Q76L83 1435 aa9.44□□□□□ -0.9
LRRC28-220ENST00000561253 FYCO1Q9BQS8 1478 aa9.44□□□□□ -0.9
LRRC28-220ENST00000561253 EPRSP07814 1512 aaKnown RBP9.44□□□□□ -0.9
LRRC28-220ENST00000561253 VPS8Q8N3P4 1428 aa9.43□□□□□ -0.9
LRRC28-220ENST00000561253 GNRH1P01148 92 aa9.43□□□□□ -0.9
LRRC28-220ENST00000561253 TIMP2P16035 220 aa9.43□□□□□ -0.9
LRRC28-220ENST00000561253 GDF10P55107 478 aa9.43□□□□□ -0.9
LRRC28-220ENST00000561253 ZFAND3Q9H8U3 227 aa9.43□□□□□ -0.9
LRRC28-220ENST00000561253 ABCC10Q5T3U5 1492 aa9.42□□□□□ -0.9
LRRC28-220ENST00000561253 ADH1AP07327 375 aa9.42□□□□□ -0.9
LRRC28-220ENST00000561253 CBLBQ13191 982 aa9.42□□□□□ -0.9
LRRC28-220ENST00000561253 SWI5Q1ZZU3 235 aa9.42□□□□□ -0.9
LRRC28-220ENST00000561253 ESCO1Q5FWF5 840 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms