RNA–Protein interactions for RNA: ENST00000560620.1

CTDSPL2-209, Transcript of CTD small phosphatase like 2, humanhuman

TSL 3

Gene CTDSPL2, Length 863 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-209ENST00000560620 LGR6Q9HBX8 967 aa17.32■□□□□ 0.36
CTDSPL2-209ENST00000560620 PNPLA7Q6ZV29 1317 aa17.31■□□□□ 0.36
CTDSPL2-209ENST00000560620 RALBP1Q15311 655 aa17.31■□□□□ 0.36
CTDSPL2-209ENST00000560620 GAS2L2Q8NHY3 880 aa17.31■□□□□ 0.36
CTDSPL2-209ENST00000560620 TAF1LQ8IZX4 1826 aa17.31■□□□□ 0.36
CTDSPL2-209ENST00000560620 SCN11AQ9UI33 1791 aa17.3■□□□□ 0.36
CTDSPL2-209ENST00000560620 RNMTO43148 476 aaKnown RBP17.3■□□□□ 0.36
CTDSPL2-209ENST00000560620 PTCD1O75127 700 aaKnown RBP17.3■□□□□ 0.36
CTDSPL2-209ENST00000560620 NEFMP07197 916 aa17.3■□□□□ 0.36
CTDSPL2-209ENST00000560620 TUBGCP6Q96RT7 1819 aa17.29■□□□□ 0.36
CTDSPL2-209ENST00000560620 GNAT3A8MTJ3 354 aa17.29■□□□□ 0.36
CTDSPL2-209ENST00000560620 PHF14O94880 888 aa17.29■□□□□ 0.36
CTDSPL2-209ENST00000560620 RSPH6AQ9H0K4 717 aa17.29■□□□□ 0.36
CTDSPL2-209ENST00000560620 SLC52A2Q9HAB3 445 aa17.29■□□□□ 0.36
CTDSPL2-209ENST00000560620 MAP3K5Q99683 1374 aa17.28■□□□□ 0.36
CTDSPL2-209ENST00000560620 C4BP0C0L5 1744 aa17.28■□□□□ 0.36
CTDSPL2-209ENST00000560620 QSER1Q2KHR3 1735 aa17.28■□□□□ 0.36
CTDSPL2-209ENST00000560620 FCHSD2O94868 740 aa17.28■□□□□ 0.36
CTDSPL2-209ENST00000560620 SLC16A10Q8TF71 515 aa17.28■□□□□ 0.36
CTDSPL2-209ENST00000560620 VIRMAQ69YN4 1812 aaKnown RBP17.28■□□□□ 0.36
CTDSPL2-209ENST00000560620 TEFQ10587 303 aa17.27■□□□□ 0.36
CTDSPL2-209ENST00000560620 ITPK1Q13572 414 aa17.27■□□□□ 0.36
CTDSPL2-209ENST00000560620 LINC00116Q8NCU8 138 aa17.27■□□□□ 0.36
CTDSPL2-209ENST00000560620 FLAD1Q8NFF5 587 aa17.27■□□□□ 0.36
CTDSPL2-209ENST00000560620 PHACTR3Q96KR7 559 aa17.27■□□□□ 0.36
CTDSPL2-209ENST00000560620 POLD1P28340 1107 aa17.26■□□□□ 0.35
CTDSPL2-209ENST00000560620 PTGER2P43116 358 aa17.26■□□□□ 0.35
CTDSPL2-209ENST00000560620 COL23A1Q86Y22 540 aaPredicted RBP17.26■□□□□ 0.35
CTDSPL2-209ENST00000560620 GNPATO15228 680 aa17.25■□□□□ 0.35
CTDSPL2-209ENST00000560620 RTF1Q92541 710 aaKnown RBP17.25■□□□□ 0.35
CTDSPL2-209ENST00000560620 MYBBP1AQ9BQG0 1328 aaKnown RBP17.24■□□□□ 0.35
CTDSPL2-209ENST00000560620 SLC39A6Q13433 755 aa17.24■□□□□ 0.35
CTDSPL2-209ENST00000560620 MSL1Q68DK7 614 aa17.24■□□□□ 0.35
CTDSPL2-209ENST00000560620 SMIM5Q71RC9 77 aa17.24■□□□□ 0.35
CTDSPL2-209ENST00000560620 KLHL34Q8N239 644 aa17.24■□□□□ 0.35
CTDSPL2-209ENST00000560620 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.23■□□□□ 0.35
CTDSPL2-209ENST00000560620 TTC5Q8N0Z6 440 aa17.23■□□□□ 0.35
CTDSPL2-209ENST00000560620 SLC4A9Q96Q91 983 aa17.23■□□□□ 0.35
CTDSPL2-209ENST00000560620 ARXQ96QS3 562 aa17.23■□□□□ 0.35
CTDSPL2-209ENST00000560620 ZNF316A6NFI3 1004 aaPredicted RBP17.22■□□□□ 0.35
CTDSPL2-209ENST00000560620 SSFA2P28290 1259 aa17.22■□□□□ 0.35
CTDSPL2-209ENST00000560620 IL17REQ8NFR9 667 aa17.22■□□□□ 0.35
CTDSPL2-209ENST00000560620 PNNQ9H307 717 aaKnown RBP17.22■□□□□ 0.35
CTDSPL2-209ENST00000560620 RTCBQ9Y3I0 505 aaKnown RBP17.22■□□□□ 0.35
CTDSPL2-209ENST00000560620 MRC1P22897 1456 aa17.22■□□□□ 0.35
CTDSPL2-209ENST00000560620 MAPK8IP3Q9UPT6 1336 aa17.21■□□□□ 0.35
CTDSPL2-209ENST00000560620 DCAF8L1A6NGE4 600 aa17.21■□□□□ 0.35
CTDSPL2-209ENST00000560620 UBR3Q6ZT12 1888 aa17.2■□□□□ 0.34
CTDSPL2-209ENST00000560620 AMIGO3Q86WK7 504 aa17.2■□□□□ 0.34
CTDSPL2-209ENST00000560620 SGIP1Q9BQI5 828 aa17.2■□□□□ 0.34
CTDSPL2-209ENST00000560620 FHDC1Q9C0D6 1143 aaPredicted RBP17.2■□□□□ 0.34
CTDSPL2-209ENST00000560620 ZNF831Q5JPB2 1677 aa17.2■□□□□ 0.34
CTDSPL2-209ENST00000560620 ADAMTS7Q9UKP4 1686 aa17.2■□□□□ 0.34
CTDSPL2-209ENST00000560620 WDR43Q15061 677 aaKnown RBP eCLIP17.19■□□□□ 0.34
CTDSPL2-209ENST00000560620 TRAPPC3LQ5T215 181 aa17.19■□□□□ 0.34
CTDSPL2-209ENST00000560620 MCM10Q7L590 875 aa17.19■□□□□ 0.34
CTDSPL2-209ENST00000560620 CRKLP46109 303 aaKnown RBP17.18■□□□□ 0.34
CTDSPL2-209ENST00000560620 RC3H1Q5TC82 1133 aaKnown RBP17.18■□□□□ 0.34
CTDSPL2-209ENST00000560620 PRKRIP1Q9H875 184 aaPredicted RBP17.18■□□□□ 0.34
CTDSPL2-209ENST00000560620 COL5A3P25940 1745 aaPredicted RBP17.18■□□□□ 0.34
CTDSPL2-209ENST00000560620 CNTNAP4Q9C0A0 1308 aa17.18■□□□□ 0.34
CTDSPL2-209ENST00000560620 BTBD11A6QL63 1104 aa17.17■□□□□ 0.34
CTDSPL2-209ENST00000560620 DCTN1Q14203 1278 aa17.17■□□□□ 0.34
CTDSPL2-209ENST00000560620 DNAJC10Q8IXB1 793 aa17.17■□□□□ 0.34
CTDSPL2-209ENST00000560620 RPS6KA4O75676 772 aa17.16■□□□□ 0.34
CTDSPL2-209ENST00000560620 RFC4P35249 363 aa17.16■□□□□ 0.34
CTDSPL2-209ENST00000560620 ZNF790Q6PG37 636 aa17.16■□□□□ 0.34
CTDSPL2-209ENST00000560620 SYT17Q9BSW7 474 aa17.16■□□□□ 0.34
CTDSPL2-209ENST00000560620 CEMIPQ8WUJ3 1361 aa17.15■□□□□ 0.34
CTDSPL2-209ENST00000560620 PLEKHF1Q96S99 279 aa17.15■□□□□ 0.34
CTDSPL2-209ENST00000560620 TJP1Q07157 1748 aa17.15■□□□□ 0.34
CTDSPL2-209ENST00000560620 HTATSF1O43719 755 aaKnown RBP17.14■□□□□ 0.33
CTDSPL2-209ENST00000560620 ADRA2BP18089 450 aa17.14■□□□□ 0.33
CTDSPL2-209ENST00000560620 NFE2L2Q16236 605 aa17.14■□□□□ 0.33
CTDSPL2-209ENST00000560620 ARHGEF1Q92888 912 aaKnown RBP17.14■□□□□ 0.33
CTDSPL2-209ENST00000560620 CCDC87Q9NVE4 849 aa17.14■□□□□ 0.33
CTDSPL2-209ENST00000560620 KCPQ6ZWJ8 1503 aa17.14■□□□□ 0.33
CTDSPL2-209ENST00000560620 VSIG10Q8N0Z9 540 aa17.13■□□□□ 0.33
CTDSPL2-209ENST00000560620 ZNF496Q96IT1 587 aaPredicted RBP17.13■□□□□ 0.33
CTDSPL2-209ENST00000560620 FMNL2Q96PY5 1086 aa17.13■□□□□ 0.33
CTDSPL2-209ENST00000560620 MYH14Q7Z406 1995 aaKnown RBP17.13■□□□□ 0.33
CTDSPL2-209ENST00000560620 SIPA1L3O60292 1781 aaPredicted RBP17.12■□□□□ 0.33
CTDSPL2-209ENST00000560620 STARD3NLO95772 234 aa17.12■□□□□ 0.33
CTDSPL2-209ENST00000560620 CYP19A1P11511 503 aaPredicted RBP17.12■□□□□ 0.33
CTDSPL2-209ENST00000560620 CCDC146Q8IYE0 955 aa17.12■□□□□ 0.33
CTDSPL2-209ENST00000560620 UBR2Q8IWV8 1755 aa17.12■□□□□ 0.33
CTDSPL2-209ENST00000560620 DLG5Q8TDM6 1919 aa17.11■□□□□ 0.33
CTDSPL2-209ENST00000560620 COL24A1Q17RW2 1714 aa17.11■□□□□ 0.33
CTDSPL2-209ENST00000560620 INTS5Q6P9B9 1019 aaKnown RBP17.11■□□□□ 0.33
CTDSPL2-209ENST00000560620 HEG1Q9ULI3 1381 aa17.11■□□□□ 0.33
CTDSPL2-209ENST00000560620 CICQ96RK0 1608 aaPredicted RBP17.1■□□□□ 0.33
CTDSPL2-209ENST00000560620 KCNQ3O43525 872 aa17.1■□□□□ 0.33
CTDSPL2-209ENST00000560620 CANXP27824 592 aaKnown RBP17.1■□□□□ 0.33
CTDSPL2-209ENST00000560620 RIPK4P57078 832 aa17.1■□□□□ 0.33
CTDSPL2-209ENST00000560620 TAF7Q15545 349 aaPredicted RBP17.1■□□□□ 0.33
CTDSPL2-209ENST00000560620 NEUROD2Q15784 382 aa17.1■□□□□ 0.33
CTDSPL2-209ENST00000560620 NPM2Q86SE8 214 aaKnown RBP17.1■□□□□ 0.33
CTDSPL2-209ENST00000560620 PELP1Q8IZL8 1130 aaKnown RBP17.1■□□□□ 0.33
CTDSPL2-209ENST00000560620 NLGN1Q8N2Q7 840 aa17.1■□□□□ 0.33
CTDSPL2-209ENST00000560620 TEX13AQ9BXU3 409 aaPredicted RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms