RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 ZNF428Q96B54 188 aa22.77■■□□□ 1.24
SNX1-208ENST00000559844 PANK1Q8TE04 598 aa22.76■■□□□ 1.23
SNX1-208ENST00000559844 IFT57Q9NWB7 429 aa22.76■■□□□ 1.23
SNX1-208ENST00000559844 RGS12O14924 1447 aa22.76■■□□□ 1.23
SNX1-208ENST00000559844 CYP27B1O15528 508 aa22.76■■□□□ 1.23
SNX1-208ENST00000559844 C1orf141Q5JVX7 400 aa22.76■■□□□ 1.23
SNX1-208ENST00000559844 ZKSCAN2Q63HK3 967 aa22.76■■□□□ 1.23
SNX1-208ENST00000559844 SMC4Q9NTJ3 1288 aa22.75■■□□□ 1.23
SNX1-208ENST00000559844 COG6Q9Y2V7 657 aa22.75■■□□□ 1.23
SNX1-208ENST00000559844 KAT6BQ8WYB5 2073 aa22.75■■□□□ 1.23
SNX1-208ENST00000559844 BCL2L13Q9BXK5 485 aa22.74■■□□□ 1.23
SNX1-208ENST00000559844 IFNL2Q8IZJ0 200 aa22.74■■□□□ 1.23
SNX1-208ENST00000559844 CLUAP1Q96AJ1 413 aa22.74■■□□□ 1.23
SNX1-208ENST00000559844 PHKG2P15735 406 aa22.73■■□□□ 1.23
SNX1-208ENST00000559844 ALDH1L2Q3SY69 923 aa22.73■■□□□ 1.23
SNX1-208ENST00000559844 AKAP4Q5JQC9 854 aa22.72■■□□□ 1.23
SNX1-208ENST00000559844 MAP3K5Q99683 1374 aa22.72■■□□□ 1.23
SNX1-208ENST00000559844 MARCH10Q8NA82 808 aaPredicted RBP22.72■■□□□ 1.23
SNX1-208ENST00000559844 GNAT3A8MTJ3 354 aa22.71■■□□□ 1.23
SNX1-208ENST00000559844 ZNF853P0CG23 659 aa22.71■■□□□ 1.23
SNX1-208ENST00000559844 SCN11AQ9UI33 1791 aa22.71■■□□□ 1.23
SNX1-208ENST00000559844 SSH1Q8WYL5 1049 aa22.7■■□□□ 1.23
SNX1-208ENST00000559844 LAS1LQ9Y4W2 734 aaKnown RBP22.7■■□□□ 1.23
SNX1-208ENST00000559844 KIF16BQ96L93 1317 aa22.7■■□□□ 1.22
SNX1-208ENST00000559844 DZIP1LQ8IYY4 767 aaKnown RBP22.69■■□□□ 1.22
SNX1-208ENST00000559844 CFAP44Q96MT7 982 aa22.69■■□□□ 1.22
SNX1-208ENST00000559844 MPRIPQ6WCQ1 1025 aa22.69■■□□□ 1.22
SNX1-208ENST00000559844 KRT27Q7Z3Y8 459 aa22.69■■□□□ 1.22
SNX1-208ENST00000559844 FTSJ3Q8IY81 847 aaKnown RBP22.69■■□□□ 1.22
SNX1-208ENST00000559844 IPO8O15397 1037 aaKnown RBP22.68■■□□□ 1.22
SNX1-208ENST00000559844 RLBP1P12271 317 aa22.68■■□□□ 1.22
SNX1-208ENST00000559844 FAM182BQ5T319 152 aa22.68■■□□□ 1.22
SNX1-208ENST00000559844 RTF1Q92541 710 aaKnown RBP22.68■■□□□ 1.22
SNX1-208ENST00000559844 DOT1LQ8TEK3 1739 aa22.67■■□□□ 1.22
SNX1-208ENST00000559844 TOGARAM1Q9Y4F4 1720 aa22.67■■□□□ 1.22
SNX1-208ENST00000559844 HSP90AB1P08238 724 aaKnown RBP22.67■■□□□ 1.22
SNX1-208ENST00000559844 BRPF1P55201 1214 aaPredicted RBP22.67■■□□□ 1.22
SNX1-208ENST00000559844 MVPQ14764 893 aaKnown RBP22.67■■□□□ 1.22
SNX1-208ENST00000559844 THUMPD2Q9BTF0 503 aaKnown RBP22.67■■□□□ 1.22
SNX1-208ENST00000559844 ADAMTS7Q9UKP4 1686 aa22.67■■□□□ 1.22
SNX1-208ENST00000559844 KDM6AO15550 1401 aaPredicted RBP22.67■■□□□ 1.22
SNX1-208ENST00000559844 DCTN1Q14203 1278 aa22.66■■□□□ 1.22
SNX1-208ENST00000559844 NKX1-1Q15270 411 aaPredicted RBP22.66■■□□□ 1.22
SNX1-208ENST00000559844 ATF7IPQ6VMQ6 1270 aa22.66■■□□□ 1.22
SNX1-208ENST00000559844 MCM10Q7L590 875 aa22.66■■□□□ 1.22
SNX1-208ENST00000559844 DCAF5Q96JK2 942 aa22.66■■□□□ 1.22
SNX1-208ENST00000559844 MBIPQ9NS73 344 aa22.65■■□□□ 1.22
SNX1-208ENST00000559844 LGR6Q9HBX8 967 aa22.65■■□□□ 1.22
SNX1-208ENST00000559844 TNNQ9UQP3 1299 aa22.65■■□□□ 1.22
SNX1-208ENST00000559844 ITGB4P16144 1822 aa22.65■■□□□ 1.22
SNX1-208ENST00000559844 HTATSF1O43719 755 aaKnown RBP22.64■■□□□ 1.21
SNX1-208ENST00000559844 SBF2Q86WG5 1849 aa22.64■■□□□ 1.21
SNX1-208ENST00000559844 IL17REQ8NFR9 667 aa22.63■■□□□ 1.21
SNX1-208ENST00000559844 NOB1Q9ULX3 412 aaKnown RBP22.63■■□□□ 1.21
SNX1-208ENST00000559844 RNMTO43148 476 aaKnown RBP22.63■■□□□ 1.21
SNX1-208ENST00000559844 VAMP4O75379 141 aa22.63■■□□□ 1.21
SNX1-208ENST00000559844 TRIM27P14373 513 aa22.63■■□□□ 1.21
SNX1-208ENST00000559844 EP400Q96L91 3159 aa22.62■■□□□ 1.21
SNX1-208ENST00000559844 CEMIPQ8WUJ3 1361 aa22.61■■□□□ 1.21
SNX1-208ENST00000559844 PDE4AP27815 886 aa22.61■■□□□ 1.21
SNX1-208ENST00000559844 DDX19BQ9UMR2 479 aa22.61■■□□□ 1.21
SNX1-208ENST00000559844 SIPA1L3O60292 1781 aaPredicted RBP22.6■■□□□ 1.21
SNX1-208ENST00000559844 IGHDP01880 384 aa22.6■■□□□ 1.21
SNX1-208ENST00000559844 TWISTNBQ3B726 338 aaPredicted RBP22.59■■□□□ 1.21
SNX1-208ENST00000559844 ARHGAP45Q92619 1136 aa22.59■■□□□ 1.21
SNX1-208ENST00000559844 ACSBG1Q96GR2 724 aa22.59■■□□□ 1.21
SNX1-208ENST00000559844 BACH2Q9BYV9 841 aa22.59■■□□□ 1.21
SNX1-208ENST00000559844 BCL9O00512 1426 aa22.58■■□□□ 1.21
SNX1-208ENST00000559844 MRC1P22897 1456 aa22.58■■□□□ 1.21
SNX1-208ENST00000559844 FAM196AQ6ZSG2 479 aa22.58■■□□□ 1.21
SNX1-208ENST00000559844 SYTL4Q96C24 671 aaPredicted RBP22.58■■□□□ 1.21
SNX1-208ENST00000559844 TEFQ10587 303 aa22.58■■□□□ 1.2
SNX1-208ENST00000559844 RWDD1Q9H446 243 aaPredicted RBP22.58■■□□□ 1.2
SNX1-208ENST00000559844 NHSQ6T4R5 1651 aa22.58■■□□□ 1.2
SNX1-208ENST00000559844 ERVV-2B6SEH9 535 aa22.57■■□□□ 1.2
SNX1-208ENST00000559844 MRPL50Q8N5N7 158 aaKnown RBP22.57■■□□□ 1.2
SNX1-208ENST00000559844 CHL1O00533 1208 aa22.56■■□□□ 1.2
SNX1-208ENST00000559844 CABP4P57796 275 aa22.56■■□□□ 1.2
SNX1-208ENST00000559844 TSPYL6Q8N831 410 aa22.56■■□□□ 1.2
SNX1-208ENST00000559844 SLC52A2Q9HAB3 445 aa22.56■■□□□ 1.2
SNX1-208ENST00000559844 PRIM1P49642 420 aaKnown RBP22.56■■□□□ 1.2
SNX1-208ENST00000559844 ITPRIPQ8IWB1 547 aa22.56■■□□□ 1.2
SNX1-208ENST00000559844 NFATC2IPQ8NCF5 419 aa22.56■■□□□ 1.2
SNX1-208ENST00000559844 PCDHB15Q9Y5E8 787 aa22.55■■□□□ 1.2
SNX1-208ENST00000559844 CHMP4BQ9H444 224 aaKnown RBP22.54■■□□□ 1.2
SNX1-208ENST00000559844 TMOD3Q9NYL9 352 aa22.54■■□□□ 1.2
SNX1-208ENST00000559844 KCNQ2O43526 872 aa22.54■■□□□ 1.2
SNX1-208ENST00000559844 ANP32AP39687 249 aaKnown RBP22.54■■□□□ 1.2
SNX1-208ENST00000559844 SKAP1Q86WV1 359 aa22.54■■□□□ 1.2
SNX1-208ENST00000559844 C8orf58Q8NAV2 365 aa22.54■■□□□ 1.2
SNX1-208ENST00000559844 BTAF1O14981 1849 aa22.53■■□□□ 1.2
SNX1-208ENST00000559844 TMEM57Q8N5G2 664 aa22.53■■□□□ 1.2
SNX1-208ENST00000559844 ELL2O00472 640 aaPredicted RBP22.51■■□□□ 1.19
SNX1-208ENST00000559844 TAF7Q15545 349 aaPredicted RBP22.51■■□□□ 1.19
SNX1-208ENST00000559844 PTF1AQ7RTS3 328 aa22.51■■□□□ 1.19
SNX1-208ENST00000559844 PIGBQ92521 554 aa22.51■■□□□ 1.19
SNX1-208ENST00000559844 KDM3BQ7LBC6 1761 aa22.5■■□□□ 1.19
SNX1-208ENST00000559844 TRIM37O94972 964 aa22.5■■□□□ 1.19
SNX1-208ENST00000559844 MIS18AQ9NYP9 233 aa22.5■■□□□ 1.19
SNX1-208ENST00000559844 BTBD11A6QL63 1104 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms