RNA–Protein interactions for RNA: ENST00000559694.5

CARMIL3-202, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 5

Gene CARMIL3, Length 4,319 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-202ENST00000559694 COPS6Q7L5N1 327 aa12.94□□□□□ -0.34
CARMIL3-202ENST00000559694 CDCA7Q9BWT1 371 aaPredicted RBP12.94□□□□□ -0.34
CARMIL3-202ENST00000559694 PDZRN3Q9UPQ7 1066 aa12.94□□□□□ -0.34
CARMIL3-202ENST00000559694 MAP3K2Q9Y2U5 619 aa12.94□□□□□ -0.34
CARMIL3-202ENST00000559694 ANKRD13DQ6ZTN6 518 aa12.94□□□□□ -0.34
CARMIL3-202ENST00000559694 ERC1Q8IUD2 1116 aa12.94□□□□□ -0.34
CARMIL3-202ENST00000559694 IL1RAPL2Q9NP60 686 aa12.94□□□□□ -0.34
CARMIL3-202ENST00000559694 FOXD4L1Q9NU39 408 aa12.94□□□□□ -0.34
CARMIL3-202ENST00000559694 CHPF2Q9P2E5 772 aa12.94□□□□□ -0.34
CARMIL3-202ENST00000559694 PCDH11XQ9BZA7 1347 aa12.94□□□□□ -0.34
CARMIL3-202ENST00000559694 PCDH11YQ9BZA8 1340 aa12.94□□□□□ -0.34
CARMIL3-202ENST00000559694 TULP1O00294 542 aaPredicted RBP12.93□□□□□ -0.34
CARMIL3-202ENST00000559694 PTMSP20962 102 aa12.93□□□□□ -0.34
CARMIL3-202ENST00000559694 ZRSR1Q15695 479 aaKnown RBP12.93□□□□□ -0.34
CARMIL3-202ENST00000559694 HSP90AB3PQ58FF7 597 aa12.93□□□□□ -0.34
CARMIL3-202ENST00000559694 LGR6Q9HBX8 967 aa12.93□□□□□ -0.34
CARMIL3-202ENST00000559694 INSRP06213 1382 aa12.93□□□□□ -0.34
CARMIL3-202ENST00000559694 TRIM27P14373 513 aa12.93□□□□□ -0.34
CARMIL3-202ENST00000559694 EXOC6BQ9Y2D4 811 aa12.93□□□□□ -0.34
CARMIL3-202ENST00000559694 KIAA0232Q92628 1395 aa12.93□□□□□ -0.34
CARMIL3-202ENST00000559694 DCAF8L1A6NGE4 600 aa12.93□□□□□ -0.34
CARMIL3-202ENST00000559694 XAGE3Q8WTP9 111 aa12.93□□□□□ -0.34
CARMIL3-202ENST00000559694 JARID2Q92833 1246 aaPredicted RBP12.93□□□□□ -0.34
CARMIL3-202ENST00000559694 CLTCL1P53675 1640 aa12.93□□□□□ -0.34
CARMIL3-202ENST00000559694 NKTRP30414 1462 aaKnown RBP12.92□□□□□ -0.34
CARMIL3-202ENST00000559694 PRIM1P49642 420 aaKnown RBP12.92□□□□□ -0.34
CARMIL3-202ENST00000559694 RPAP2Q8IXW5 612 aaPredicted RBP12.92□□□□□ -0.34
CARMIL3-202ENST00000559694 FAM43AQ8N2R8 423 aa12.92□□□□□ -0.34
CARMIL3-202ENST00000559694 GCC1Q96CN9 775 aa12.92□□□□□ -0.34
CARMIL3-202ENST00000559694 MAP3K5Q99683 1374 aa12.92□□□□□ -0.34
CARMIL3-202ENST00000559694 DDX11L8A8MPP1 907 aa12.92□□□□□ -0.34
CARMIL3-202ENST00000559694 REC8O95072 547 aa12.92□□□□□ -0.34
CARMIL3-202ENST00000559694 ARHGEF25Q86VW2 580 aa12.92□□□□□ -0.34
CARMIL3-202ENST00000559694 FSD1Q9BTV5 496 aa12.92□□□□□ -0.34
CARMIL3-202ENST00000559694 GOLGA6L4A6NEF3 574 aa12.92□□□□□ -0.34
CARMIL3-202ENST00000559694 LRRCC1Q9C099 1032 aa12.92□□□□□ -0.34
CARMIL3-202ENST00000559694 IGHMBP2P38935 993 aaKnown RBP12.92□□□□□ -0.34
CARMIL3-202ENST00000559694 CCDC158Q5M9N0 1113 aa12.92□□□□□ -0.34
CARMIL3-202ENST00000559694 AMOTL1Q8IY63 956 aa12.92□□□□□ -0.34
CARMIL3-202ENST00000559694 AGLP35573 1532 aa12.91□□□□□ -0.34
CARMIL3-202ENST00000559694 LMTK2Q8IWU2 1503 aa12.91□□□□□ -0.34
CARMIL3-202ENST00000559694 TSPYL6Q8N831 410 aa12.91□□□□□ -0.34
CARMIL3-202ENST00000559694 PTPRMP28827 1452 aa12.91□□□□□ -0.34
CARMIL3-202ENST00000559694 ZKSCAN1P17029 563 aaPredicted RBP12.91□□□□□ -0.34
CARMIL3-202ENST00000559694 UBE3BQ7Z3V4 1068 aa12.91□□□□□ -0.34
CARMIL3-202ENST00000559694 TRIM34Q9BYJ4 488 aa12.91□□□□□ -0.34
CARMIL3-202ENST00000559694 TBC1D2BQ9UPU7 963 aa12.91□□□□□ -0.34
CARMIL3-202ENST00000559694 ABCA6Q8N139 1617 aa12.91□□□□□ -0.34
CARMIL3-202ENST00000559694 RAD21O60216 631 aa12.91□□□□□ -0.34
CARMIL3-202ENST00000559694 PKNOX2Q96KN3 472 aa12.9□□□□□ -0.34
CARMIL3-202ENST00000559694 KIDINS220Q9ULH0 1771 aa12.9□□□□□ -0.34
CARMIL3-202ENST00000559694 GNL3LQ9NVN8 582 aaKnown RBP12.9□□□□□ -0.34
CARMIL3-202ENST00000559694 CEP152O94986 1710 aa12.9□□□□□ -0.34
CARMIL3-202ENST00000559694 MADDQ8WXG6 1647 aa12.9□□□□□ -0.35
CARMIL3-202ENST00000559694 LRRFIP2Q9Y608 721 aaKnown RBP12.89□□□□□ -0.35
CARMIL3-202ENST00000559694 ST18O60284 1047 aa12.89□□□□□ -0.35
CARMIL3-202ENST00000559694 AACSQ86V21 672 aa12.89□□□□□ -0.35
CARMIL3-202ENST00000559694 CDK11BP21127 795 aaKnown RBP12.89□□□□□ -0.35
CARMIL3-202ENST00000559694 CHAF1AQ13111 956 aaPredicted RBP12.89□□□□□ -0.35
CARMIL3-202ENST00000559694 TTC39AQ5SRH9 613 aa12.89□□□□□ -0.35
CARMIL3-202ENST00000559694 QTRT2Q9H974 415 aaKnown RBP12.89□□□□□ -0.35
CARMIL3-202ENST00000559694 USP6P35125 1406 aa12.89□□□□□ -0.35
CARMIL3-202ENST00000559694 KDM5AP29375 1690 aaKnown RBP12.89□□□□□ -0.35
CARMIL3-202ENST00000559694 IFIT5Q13325 482 aaKnown RBP12.89□□□□□ -0.35
CARMIL3-202ENST00000559694 METTL24Q5JXM2 366 aa12.89□□□□□ -0.35
CARMIL3-202ENST00000559694 INTS3Q68E01 1043 aaKnown RBP12.89□□□□□ -0.35
CARMIL3-202ENST00000559694 TFCP2L1Q9NZI6 479 aa12.89□□□□□ -0.35
CARMIL3-202ENST00000559694 PTPRCP08575 1304 aa12.88□□□□□ -0.35
CARMIL3-202ENST00000559694 KDM4FA0A1W2PPD8 638 aa12.88□□□□□ -0.35
CARMIL3-202ENST00000559694 ZNF790Q6PG37 636 aa12.88□□□□□ -0.35
CARMIL3-202ENST00000559694 CNTROBQ8N137 903 aa12.88□□□□□ -0.35
CARMIL3-202ENST00000559694 SYNMO15061 1565 aa12.88□□□□□ -0.35
CARMIL3-202ENST00000559694 DEPDC5O75140 1603 aa12.88□□□□□ -0.35
CARMIL3-202ENST00000559694 CWC25Q9NXE8 425 aaPredicted RBP12.88□□□□□ -0.35
CARMIL3-202ENST00000559694 ZNF219Q9P2Y4 722 aaPredicted RBP12.88□□□□□ -0.35
CARMIL3-202ENST00000559694 FKBP4Q02790 459 aaKnown RBP eCLIP12.88□□□□□ -0.35
CARMIL3-202ENST00000559694 TRDNQ13061 729 aa12.88□□□□□ -0.35
CARMIL3-202ENST00000559694 CLTCQ00610 1675 aaKnown RBP12.88□□□□□ -0.35
CARMIL3-202ENST00000559694 ARHGEF40Q8TER5 1519 aa12.87□□□□□ -0.35
CARMIL3-202ENST00000559694 VAMP4O75379 141 aa12.87□□□□□ -0.35
CARMIL3-202ENST00000559694 SPINK5Q9NQ38 1064 aaPredicted RBP12.87□□□□□ -0.35
CARMIL3-202ENST00000559694 CHMP5Q9NZZ3 219 aa12.87□□□□□ -0.35
CARMIL3-202ENST00000559694 NBPF5PQ86XG9 351 aaPredicted RBP12.87□□□□□ -0.35
CARMIL3-202ENST00000559694 RTCBQ9Y3I0 505 aaKnown RBP12.87□□□□□ -0.35
CARMIL3-202ENST00000559694 KIAA2012Q0VF49 1180 aa12.86□□□□□ -0.35
CARMIL3-202ENST00000559694 SPATA31A3Q5VYP0 1347 aa12.86□□□□□ -0.35
CARMIL3-202ENST00000559694 RNF20Q5VTR2 975 aa12.86□□□□□ -0.35
CARMIL3-202ENST00000559694 DDX49Q9Y6V7 483 aaKnown RBP12.86□□□□□ -0.35
CARMIL3-202ENST00000559694 ADGRB3O60242 1522 aa12.86□□□□□ -0.35
CARMIL3-202ENST00000559694 MAP4K4O95819 1239 aaPredicted RBP12.86□□□□□ -0.35
CARMIL3-202ENST00000559694 PPP1R42Q7Z4L9 355 aa12.86□□□□□ -0.35
CARMIL3-202ENST00000559694 DZIP3Q86Y13 1208 aaKnown RBP12.86□□□□□ -0.35
CARMIL3-202ENST00000559694 NEURL4Q96JN8 1562 aa12.85□□□□□ -0.35
CARMIL3-202ENST00000559694 RPGRQ92834 1020 aaKnown RBP12.85□□□□□ -0.35
CARMIL3-202ENST00000559694 SETDB2Q96T68 719 aa12.85□□□□□ -0.35
CARMIL3-202ENST00000559694 ALKQ9UM73 1620 aa12.85□□□□□ -0.35
CARMIL3-202ENST00000559694 CERKQ8TCT0 537 aa12.85□□□□□ -0.35
CARMIL3-202ENST00000559694 CCNL1Q9UK58 526 aaPredicted RBP12.85□□□□□ -0.35
CARMIL3-202ENST00000559694 TRPC5Q9UL62 973 aaPredicted RBP12.85□□□□□ -0.35
CARMIL3-202ENST00000559694 SYNE3Q6ZMZ3 975 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms