RNA–Protein interactions for RNA: ENST00000559193.5

SPG11-215, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 2,579 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-215ENST00000559193 TSHZ3Q63HK5 1081 aa20.35■□□□□ 0.85
SPG11-215ENST00000559193 STK31Q9BXU1 1019 aa20.35■□□□□ 0.85
SPG11-215ENST00000559193 AMOTL2Q9Y2J4 779 aa20.35■□□□□ 0.85
SPG11-215ENST00000559193 TUBGCP6Q96RT7 1819 aa20.34■□□□□ 0.85
SPG11-215ENST00000559193 FLIIQ13045 1269 aa20.34■□□□□ 0.85
SPG11-215ENST00000559193 LMBRD1Q9NUN5 540 aa20.34■□□□□ 0.85
SPG11-215ENST00000559193 NGDNQ8NEJ9 315 aaKnown RBP20.33■□□□□ 0.85
SPG11-215ENST00000559193 ZDHHC9Q9Y397 364 aa20.33■□□□□ 0.85
SPG11-215ENST00000559193 PNMA6EA0A0J9YXQ4 647 aa20.32■□□□□ 0.84
SPG11-215ENST00000559193 HTATSF1O43719 755 aaKnown RBP20.32■□□□□ 0.84
SPG11-215ENST00000559193 RGPD8O14715 1765 aaPredicted RBP20.32■□□□□ 0.84
SPG11-215ENST00000559193 FKBP5Q13451 457 aaPredicted RBP20.32■□□□□ 0.84
SPG11-215ENST00000559193 LRRCC1Q9C099 1032 aa20.32■□□□□ 0.84
SPG11-215ENST00000559193 TRIM44Q96DX7 344 aaPredicted RBP20.31■□□□□ 0.84
SPG11-215ENST00000559193 NWD1Q149M9 1564 aa20.31■□□□□ 0.84
SPG11-215ENST00000559193 GNAI3P08754 354 aa20.31■□□□□ 0.84
SPG11-215ENST00000559193 NASPP49321 788 aaPredicted RBP20.31■□□□□ 0.84
SPG11-215ENST00000559193 CCDC30Q5VVM6 783 aa20.31■□□□□ 0.84
SPG11-215ENST00000559193 ESYT1Q9BSJ8 1104 aa20.31■□□□□ 0.84
SPG11-215ENST00000559193 MX1P20591 662 aa20.3■□□□□ 0.84
SPG11-215ENST00000559193 ZNF445P59923 1031 aa20.3■□□□□ 0.84
SPG11-215ENST00000559193 NECTIN2Q92692 538 aa20.3■□□□□ 0.84
SPG11-215ENST00000559193 ATP8B2P98198 1209 aa20.3■□□□□ 0.84
SPG11-215ENST00000559193 GNAT3A8MTJ3 354 aa20.29■□□□□ 0.84
SPG11-215ENST00000559193 CCDC173Q0VFZ6 552 aa20.29■□□□□ 0.84
SPG11-215ENST00000559193 CAVIN1Q6NZI2 390 aaKnown RBP20.29■□□□□ 0.84
SPG11-215ENST00000559193 EID1Q9Y6B2 187 aa20.29■□□□□ 0.84
SPG11-215ENST00000559193 CEBPAP49715 358 aaPredicted RBP20.29■□□□□ 0.84
SPG11-215ENST00000559193 PPP1R9BQ96SB3 815 aa20.29■□□□□ 0.84
SPG11-215ENST00000559193 SLIT1O75093 1534 aa20.28■□□□□ 0.84
SPG11-215ENST00000559193 N4BP2Q86UW6 1770 aaPredicted RBP20.28■□□□□ 0.84
SPG11-215ENST00000559193 ARHGAP23Q9P227 1491 aa20.28■□□□□ 0.84
SPG11-215ENST00000559193 ZSCAN23Q3MJ62 389 aa20.28■□□□□ 0.84
SPG11-215ENST00000559193 NEK4P51957 841 aa20.28■□□□□ 0.84
SPG11-215ENST00000559193 NAP1L5Q96NT1 182 aaPredicted RBP20.28■□□□□ 0.84
SPG11-215ENST00000559193 MARF1Q9Y4F3 1742 aaKnown RBP20.28■□□□□ 0.84
SPG11-215ENST00000559193 NCLP19338 710 aaKnown RBP20.27■□□□□ 0.84
SPG11-215ENST00000559193 HOXC9P31274 260 aa20.27■□□□□ 0.84
SPG11-215ENST00000559193 TBX22Q9Y458 520 aa20.27■□□□□ 0.84
SPG11-215ENST00000559193 LRRFIP2Q9Y608 721 aaKnown RBP20.27■□□□□ 0.84
SPG11-215ENST00000559193 MAP3K5Q99683 1374 aa20.27■□□□□ 0.84
SPG11-215ENST00000559193 NLRP6P59044 892 aa20.27■□□□□ 0.83
SPG11-215ENST00000559193 IL17REQ8NFR9 667 aa20.27■□□□□ 0.83
SPG11-215ENST00000559193 TMX3Q96JJ7 454 aa20.27■□□□□ 0.83
SPG11-215ENST00000559193 PALD1Q9ULE6 856 aa20.27■□□□□ 0.83
SPG11-215ENST00000559193 PXDNLA1KZ92 1463 aa20.27■□□□□ 0.83
SPG11-215ENST00000559193 CHMLP26374 656 aa20.26■□□□□ 0.83
SPG11-215ENST00000559193 GPT2Q8TD30 523 aa20.26■□□□□ 0.83
SPG11-215ENST00000559193 CHAMP1Q96JM3 812 aa20.26■□□□□ 0.83
SPG11-215ENST00000559193 STAP2Q9UGK3 403 aa20.26■□□□□ 0.83
SPG11-215ENST00000559193 PRPF40AO75400 957 aaKnown RBP20.25■□□□□ 0.83
SPG11-215ENST00000559193 SOS1Q07889 1333 aaPredicted RBP20.24■□□□□ 0.83
SPG11-215ENST00000559193 NUTM2GQ5VZR2 741 aa20.24■□□□□ 0.83
SPG11-215ENST00000559193 RILPL2Q969X0 211 aa20.24■□□□□ 0.83
SPG11-215ENST00000559193 USP44Q9H0E7 712 aa20.24■□□□□ 0.83
SPG11-215ENST00000559193 TRIM6-TRIM34B2RNG4 842 aa20.23■□□□□ 0.83
SPG11-215ENST00000559193 UNC5CLQ8IV45 518 aa20.23■□□□□ 0.83
SPG11-215ENST00000559193 MCM2P49736 904 aa20.23■□□□□ 0.83
SPG11-215ENST00000559193 TAF7Q15545 349 aaPredicted RBP20.23■□□□□ 0.83
SPG11-215ENST00000559193 ANO2Q9NQ90 1003 aa20.23■□□□□ 0.83
SPG11-215ENST00000559193 RBM27Q9P2N5 1060 aaKnown RBP20.23■□□□□ 0.83
SPG11-215ENST00000559193 USP54Q70EL1 1684 aa20.22■□□□□ 0.83
SPG11-215ENST00000559193 ANKARQ7Z5J8 1434 aa20.22■□□□□ 0.83
SPG11-215ENST00000559193 MCCP23508 829 aa20.22■□□□□ 0.83
SPG11-215ENST00000559193 ANAPC15P60006 121 aa20.22■□□□□ 0.83
SPG11-215ENST00000559193 CUL4AQ13619 759 aa20.22■□□□□ 0.83
SPG11-215ENST00000559193 SRCIN1Q9C0H9 1055 aa20.22■□□□□ 0.83
SPG11-215ENST00000559193 BABAM1Q9NWV8 329 aa20.22■□□□□ 0.83
SPG11-215ENST00000559193 CACNA1FO60840 1977 aa20.21■□□□□ 0.83
SPG11-215ENST00000559193 UBTFL1P0CB47 393 aaPredicted RBP20.21■□□□□ 0.83
SPG11-215ENST00000559193 ANP32BQ92688 251 aaKnown RBP20.21■□□□□ 0.83
SPG11-215ENST00000559193 IL17RAQ96F46 866 aa20.21■□□□□ 0.83
SPG11-215ENST00000559193 RBSNQ9H1K0 784 aa20.21■□□□□ 0.83
SPG11-215ENST00000559193 AOX1Q06278 1338 aa20.21■□□□□ 0.83
SPG11-215ENST00000559193 FOXD4L5Q5VV16 416 aaPredicted RBP20.2■□□□□ 0.82
SPG11-215ENST00000559193 FOXD4L4Q8WXT5 416 aaPredicted RBP20.2■□□□□ 0.82
SPG11-215ENST00000559193 LTV1Q96GA3 475 aaPredicted RBP20.2■□□□□ 0.82
SPG11-215ENST00000559193 BRD1O95696 1058 aa20.2■□□□□ 0.82
SPG11-215ENST00000559193 SSH3Q8TE77 659 aa20.2■□□□□ 0.82
SPG11-215ENST00000559193 IL25Q9H293 177 aa20.2■□□□□ 0.82
SPG11-215ENST00000559193 PHAXQ9H814 394 aaKnown RBP20.2■□□□□ 0.82
SPG11-215ENST00000559193 IL1RAPL2Q9NP60 686 aa20.2■□□□□ 0.82
SPG11-215ENST00000559193 PRIM1P49642 420 aaKnown RBP20.19■□□□□ 0.82
SPG11-215ENST00000559193 HDGFL1Q5TGJ6 251 aa20.19■□□□□ 0.82
SPG11-215ENST00000559193 TMEM63CQ9P1W3 806 aa20.19■□□□□ 0.82
SPG11-215ENST00000559193 NSFL1CQ9UNZ2 370 aaKnown RBP20.19■□□□□ 0.82
SPG11-215ENST00000559193 NOL8Q76FK4 1167 aaKnown RBP20.18■□□□□ 0.82
SPG11-215ENST00000559193 USHBP1Q8N6Y0 703 aa20.18■□□□□ 0.82
SPG11-215ENST00000559193 INTS4Q96HW7 963 aaKnown RBP20.17■□□□□ 0.82
SPG11-215ENST00000559193 ZSCAN30Q86W11 494 aa20.17■□□□□ 0.82
SPG11-215ENST00000559193 NUTM1Q86Y26 1132 aa20.17■□□□□ 0.82
SPG11-215ENST00000559193 POLA2Q14181 598 aa20.16■□□□□ 0.82
SPG11-215ENST00000559193 ABTB2Q8N961 1025 aa20.16■□□□□ 0.82
SPG11-215ENST00000559193 UPF3BQ9BZI7 483 aaKnown RBP20.16■□□□□ 0.82
SPG11-215ENST00000559193 PPP1R42Q7Z4L9 355 aa20.16■□□□□ 0.82
SPG11-215ENST00000559193 CEMIPQ8WUJ3 1361 aa20.16■□□□□ 0.82
SPG11-215ENST00000559193 MED1Q15648 1581 aaPredicted RBP20.15■□□□□ 0.82
SPG11-215ENST00000559193 KCNA6P17658 529 aa20.15■□□□□ 0.82
SPG11-215ENST00000559193 PLPPR3Q6T4P5 718 aa20.15■□□□□ 0.82
SPG11-215ENST00000559193 RAB11FIP3O75154 756 aa20.14■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms