RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 COL3A1P02461 1466 aaPredicted RBP12.96□□□□□ -0.33
SPG11-214ENST00000558989 CFAP53Q96M91 514 aa12.96□□□□□ -0.33
SPG11-214ENST00000558989 SRCAPQ6ZRS2 3230 aa12.96□□□□□ -0.34
SPG11-214ENST00000558989 C1orf141Q5JVX7 400 aa12.95□□□□□ -0.34
SPG11-214ENST00000558989 PIGBQ92521 554 aa12.95□□□□□ -0.34
SPG11-214ENST00000558989 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.95□□□□□ -0.343e-7■■■□□ 15.9
SPG11-214ENST00000558989 CCNL1Q9UK58 526 aaPredicted RBP12.95□□□□□ -0.34
SPG11-214ENST00000558989 TUBGCP6Q96RT7 1819 aa12.95□□□□□ -0.34
SPG11-214ENST00000558989 TMOD3Q9NYL9 352 aa12.95□□□□□ -0.34
SPG11-214ENST00000558989 TAF1LQ8IZX4 1826 aa12.94□□□□□ -0.34
SPG11-214ENST00000558989 SLC15A2Q16348 729 aa12.94□□□□□ -0.34
SPG11-214ENST00000558989 AMOTQ4VCS5 1084 aa12.94□□□□□ -0.34
SPG11-214ENST00000558989 ATF5Q9Y2D1 282 aaPredicted RBP12.94□□□□□ -0.34
SPG11-214ENST00000558989 SCN11AQ9UI33 1791 aa12.94□□□□□ -0.34
SPG11-214ENST00000558989 NKX1-1Q15270 411 aaPredicted RBP12.93□□□□□ -0.34
SPG11-214ENST00000558989 ZNF827Q17R98 1081 aa12.93□□□□□ -0.34
SPG11-214ENST00000558989 KDRP35968 1356 aa12.93□□□□□ -0.34
SPG11-214ENST00000558989 PALLDQ8WX93 1383 aa12.93□□□□□ -0.34
SPG11-214ENST00000558989 C5P01031 1676 aa12.93□□□□□ -0.34
SPG11-214ENST00000558989 PAPPAQ13219 1627 aa12.93□□□□□ -0.34
SPG11-214ENST00000558989 ZBTB7AO95365 584 aa12.92□□□□□ -0.34
SPG11-214ENST00000558989 ASAP1Q9ULH1 1129 aa12.92□□□□□ -0.34
SPG11-214ENST00000558989 U2AF1L5P0DN76 240 aaPredicted RBP12.92□□□□□ -0.34
SPG11-214ENST00000558989 U2AF1Q01081 240 aaKnown RBP eCLIP12.92□□□□□ -0.34
SPG11-214ENST00000558989 MTHFSDQ2M296 383 aaKnown RBP12.92□□□□□ -0.34
SPG11-214ENST00000558989 KDM6AO15550 1401 aaPredicted RBP12.91□□□□□ -0.34
SPG11-214ENST00000558989 CASZ1Q86V15 1759 aa12.91□□□□□ -0.34
SPG11-214ENST00000558989 CABP4P57796 275 aa12.91□□□□□ -0.34
SPG11-214ENST00000558989 SLC27A3Q5K4L6 730 aa12.91□□□□□ -0.34
SPG11-214ENST00000558989 HSP90AB1P08238 724 aaKnown RBP12.9□□□□□ -0.34
SPG11-214ENST00000558989 DCAF5Q96JK2 942 aa12.9□□□□□ -0.34
SPG11-214ENST00000558989 LGR6Q9HBX8 967 aa12.9□□□□□ -0.34
SPG11-214ENST00000558989 TFCP2L1Q9NZI6 479 aa12.9□□□□□ -0.34
SPG11-214ENST00000558989 NUDCQ9Y266 331 aa12.9□□□□□ -0.34
SPG11-214ENST00000558989 LRP5O75197 1615 aa12.9□□□□□ -0.34
SPG11-214ENST00000558989 PRKAR2BP31323 418 aa12.9□□□□□ -0.34
SPG11-214ENST00000558989 RBM42Q9BTD8 480 aaKnown RBP12.9□□□□□ -0.34
SPG11-214ENST00000558989 SMIM5Q71RC9 77 aa12.89□□□□□ -0.35
SPG11-214ENST00000558989 NFATC2IPQ8NCF5 419 aa12.89□□□□□ -0.35
SPG11-214ENST00000558989 RSPH6AQ9H0K4 717 aa12.89□□□□□ -0.35
SPG11-214ENST00000558989 AKAP4Q5JQC9 854 aa12.88□□□□□ -0.35
SPG11-214ENST00000558989 SMARCC1Q92922 1105 aaPredicted RBP12.88□□□□□ -0.35
SPG11-214ENST00000558989 ZMYND15Q9H091 742 aa12.88□□□□□ -0.35
SPG11-214ENST00000558989 ATG3Q9NT62 314 aa12.88□□□□□ -0.35
SPG11-214ENST00000558989 ERVV-2B6SEH9 535 aa12.88□□□□□ -0.35
SPG11-214ENST00000558989 ATP6V1AP38606 617 aa12.88□□□□□ -0.35
SPG11-214ENST00000558989 SPOCK2Q92563 424 aa12.88□□□□□ -0.35
SPG11-214ENST00000558989 AKT1S1Q96B36 256 aa12.88□□□□□ -0.35
SPG11-214ENST00000558989 PHACTR3Q96KR7 559 aa12.88□□□□□ -0.35
SPG11-214ENST00000558989 SPON1Q9HCB6 807 aa12.88□□□□□ -0.35
SPG11-214ENST00000558989 PPP1R1BQ9UD71 204 aaPredicted RBP12.88□□□□□ -0.35
SPG11-214ENST00000558989 LOC102724428A0A0B4J2F2 783 aa12.87□□□□□ -0.35
SPG11-214ENST00000558989 PTCD1O75127 700 aaKnown RBP12.87□□□□□ -0.35
SPG11-214ENST00000558989 SIK1P57059 783 aa12.87□□□□□ -0.35
SPG11-214ENST00000558989 DLG5Q8TDM6 1919 aa12.87□□□□□ -0.35
SPG11-214ENST00000558989 C4BP0C0L5 1744 aa12.87□□□□□ -0.35
SPG11-214ENST00000558989 RNMTO43148 476 aaKnown RBP12.86□□□□□ -0.35
SPG11-214ENST00000558989 PHF14O94880 888 aa12.86□□□□□ -0.35
SPG11-214ENST00000558989 PNPLA7Q6ZV29 1317 aa12.86□□□□□ -0.35
SPG11-214ENST00000558989 QSER1Q2KHR3 1735 aa12.86□□□□□ -0.35
SPG11-214ENST00000558989 SLC39A6Q13433 755 aa12.85□□□□□ -0.35
SPG11-214ENST00000558989 PLEKHG2Q9H7P9 1386 aa12.85□□□□□ -0.35
SPG11-214ENST00000558989 ZNF316A6NFI3 1004 aaPredicted RBP12.85□□□□□ -0.35
SPG11-214ENST00000558989 ITPK1Q13572 414 aa12.85□□□□□ -0.35
SPG11-214ENST00000558989 RALBP1Q15311 655 aa12.85□□□□□ -0.35
SPG11-214ENST00000558989 LINC00116Q8NCU8 138 aa12.85□□□□□ -0.35
SPG11-214ENST00000558989 AK7Q96M32 723 aa12.85□□□□□ -0.35
SPG11-214ENST00000558989 UBR3Q6ZT12 1888 aa12.85□□□□□ -0.35
SPG11-214ENST00000558989 MSL1Q68DK7 614 aa12.83□□□□□ -0.35
SPG11-214ENST00000558989 COL23A1Q86Y22 540 aaPredicted RBP12.83□□□□□ -0.35
SPG11-214ENST00000558989 GAS2L2Q8NHY3 880 aa12.83□□□□□ -0.35
SPG11-214ENST00000558989 SLC52A2Q9HAB3 445 aa12.83□□□□□ -0.35
SPG11-214ENST00000558989 MAP3K5Q99683 1374 aa12.83□□□□□ -0.36
SPG11-214ENST00000558989 MYH14Q7Z406 1995 aaKnown RBP12.83□□□□□ -0.36
SPG11-214ENST00000558989 GNAT3A8MTJ3 354 aa12.83□□□□□ -0.36
SPG11-214ENST00000558989 AMIGO3Q86WK7 504 aa12.83□□□□□ -0.36
SPG11-214ENST00000558989 SLC4A9Q96Q91 983 aa12.83□□□□□ -0.36
SPG11-214ENST00000558989 MYBBP1AQ9BQG0 1328 aaKnown RBP12.83□□□□□ -0.36
SPG11-214ENST00000558989 DCTN1Q14203 1278 aa12.82□□□□□ -0.36
SPG11-214ENST00000558989 IL17REQ8NFR9 667 aa12.82□□□□□ -0.36
SPG11-214ENST00000558989 MTFR1LQ9H019 292 aa12.82□□□□□ -0.36
SPG11-214ENST00000558989 COL5A3P25940 1745 aaPredicted RBP12.82□□□□□ -0.36
SPG11-214ENST00000558989 GNPATO15228 680 aa12.81□□□□□ -0.36
SPG11-214ENST00000558989 FCHSD2O94868 740 aa12.81□□□□□ -0.36
SPG11-214ENST00000558989 TEFQ10587 303 aa12.81□□□□□ -0.36
SPG11-214ENST00000558989 MCM10Q7L590 875 aa12.81□□□□□ -0.36
SPG11-214ENST00000558989 TJP1Q07157 1748 aa12.81□□□□□ -0.36
SPG11-214ENST00000558989 SIPA1L3O60292 1781 aaPredicted RBP12.81□□□□□ -0.36
SPG11-214ENST00000558989 NEFMP07197 916 aa12.81□□□□□ -0.36
SPG11-214ENST00000558989 MAPK8IP2Q13387 824 aaPredicted RBP12.81□□□□□ -0.36
SPG11-214ENST00000558989 ADAMTS7Q9UKP4 1686 aa12.81□□□□□ -0.36
SPG11-214ENST00000558989 PTGER2P43116 358 aa12.8□□□□□ -0.36
SPG11-214ENST00000558989 PRKRIP1Q9H875 184 aaPredicted RBP12.8□□□□□ -0.36
SPG11-214ENST00000558989 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.79□□□□□ -0.36
SPG11-214ENST00000558989 CCDC146Q8IYE0 955 aa12.79□□□□□ -0.36
SPG11-214ENST00000558989 RTF1Q92541 710 aaKnown RBP12.79□□□□□ -0.36
SPG11-214ENST00000558989 MAPK8IP3Q9UPT6 1336 aa12.79□□□□□ -0.36
SPG11-214ENST00000558989 MRC1P22897 1456 aa12.78□□□□□ -0.36
SPG11-214ENST00000558989 NEUROD2Q15784 382 aa12.78□□□□□ -0.36
SPG11-214ENST00000558989 DNAJC10Q8IXB1 793 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms