RNA–Protein interactions for RNA: ENST00000558958.1

CLPX-203, Transcript of caseinolytic mitochondrial matrix peptidase chaperone subunit, humanhuman

TSL 1 (best)

Gene CLPX, Length 1,493 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPX-203ENST00000558958 ERVV-2B6SEH9 535 aa23.49■■□□□ 1.35
CLPX-203ENST00000558958 MIS18AQ9NYP9 233 aa23.49■■□□□ 1.35
CLPX-203ENST00000558958 TSPYL4Q9UJ04 414 aa23.48■■□□□ 1.35
CLPX-203ENST00000558958 NFATC2IPQ8NCF5 419 aa23.47■■□□□ 1.35
CLPX-203ENST00000558958 SIPA1L3O60292 1781 aaPredicted RBP23.46■■□□□ 1.35
CLPX-203ENST00000558958 CABP4P57796 275 aa23.46■■□□□ 1.35
CLPX-203ENST00000558958 BTBD11A6QL63 1104 aa23.45■■□□□ 1.34
CLPX-203ENST00000558958 RXRBP28702 533 aa23.45■■□□□ 1.34
CLPX-203ENST00000558958 POTEAQ6S8J7 498 aa23.45■■□□□ 1.34
CLPX-203ENST00000558958 TOGARAM1Q9Y4F4 1720 aa23.45■■□□□ 1.34
CLPX-203ENST00000558958 EXOSC9Q06265 439 aaKnown RBP23.43■■□□□ 1.34
CLPX-203ENST00000558958 TMOD3Q9NYL9 352 aa23.41■■□□□ 1.34
CLPX-203ENST00000558958 KDM3BQ7LBC6 1761 aa23.4■■□□□ 1.34
CLPX-203ENST00000558958 BCL9O00512 1426 aa23.4■■□□□ 1.34
CLPX-203ENST00000558958 KCNQ3O43525 872 aa23.39■■□□□ 1.34
CLPX-203ENST00000558958 CT47B1P0C2W7 299 aaPredicted RBP23.38■■□□□ 1.33
CLPX-203ENST00000558958 PRIM1P49642 420 aaKnown RBP23.38■■□□□ 1.33
CLPX-203ENST00000558958 ZNF790Q6PG37 636 aa23.38■■□□□ 1.33
CLPX-203ENST00000558958 C8orf58Q8NAV2 365 aa23.38■■□□□ 1.33
CLPX-203ENST00000558958 PIGBQ92521 554 aa23.38■■□□□ 1.33
CLPX-203ENST00000558958 DOT1LQ8TEK3 1739 aa23.38■■□□□ 1.33
CLPX-203ENST00000558958 EIF4A1P60842 406 aaKnown RBP23.37■■□□□ 1.33
CLPX-203ENST00000558958 SLC39A6Q13433 755 aa23.37■■□□□ 1.33
CLPX-203ENST00000558958 KRT27Q7Z3Y8 459 aa23.37■■□□□ 1.33
CLPX-203ENST00000558958 TSPYL6Q8N831 410 aa23.37■■□□□ 1.33
CLPX-203ENST00000558958 ITGB4P16144 1822 aa23.37■■□□□ 1.33
CLPX-203ENST00000558958 KRT24Q2M2I5 525 aa23.36■■□□□ 1.33
CLPX-203ENST00000558958 ACSBG1Q96GR2 724 aa23.36■■□□□ 1.33
CLPX-203ENST00000558958 BRWD3Q6RI45 1802 aa23.36■■□□□ 1.33
CLPX-203ENST00000558958 RGS12O14924 1447 aa23.36■■□□□ 1.33
CLPX-203ENST00000558958 FAM182BQ5T319 152 aa23.36■■□□□ 1.33
CLPX-203ENST00000558958 SYTL4Q96C24 671 aaPredicted RBP23.36■■□□□ 1.33
CLPX-203ENST00000558958 RCAN3Q9UKA8 241 aa23.36■■□□□ 1.33
CLPX-203ENST00000558958 TWISTNBQ3B726 338 aaPredicted RBP23.35■■□□□ 1.33
CLPX-203ENST00000558958 ELL2O00472 640 aaPredicted RBP23.34■■□□□ 1.33
CLPX-203ENST00000558958 VAMP4O75379 141 aa23.34■■□□□ 1.33
CLPX-203ENST00000558958 TTC5Q8N0Z6 440 aa23.34■■□□□ 1.33
CLPX-203ENST00000558958 HEG1Q9ULI3 1381 aa23.33■■□□□ 1.33
CLPX-203ENST00000558958 KAT6BQ8WYB5 2073 aa23.33■■□□□ 1.32
CLPX-203ENST00000558958 PAPPAQ13219 1627 aa23.32■■□□□ 1.32
CLPX-203ENST00000558958 KCNQ2O43526 872 aa23.32■■□□□ 1.32
CLPX-203ENST00000558958 SOS1Q07889 1333 aaPredicted RBP23.32■■□□□ 1.32
CLPX-203ENST00000558958 ZNF428Q96B54 188 aa23.31■■□□□ 1.32
CLPX-203ENST00000558958 ASAP1Q9ULH1 1129 aa23.31■■□□□ 1.32
CLPX-203ENST00000558958 ZNF496Q96IT1 587 aaPredicted RBP23.3■■□□□ 1.32
CLPX-203ENST00000558958 ATG3Q9NT62 314 aa23.3■■□□□ 1.32
CLPX-203ENST00000558958 RARSP54136 660 aaKnown RBP23.3■■□□□ 1.32
CLPX-203ENST00000558958 FAM196AQ6ZSG2 479 aa23.3■■□□□ 1.32
CLPX-203ENST00000558958 FMNL2Q96PY5 1086 aa23.3■■□□□ 1.32
CLPX-203ENST00000558958 GIGYF1O75420 1035 aaPredicted RBP23.29■■□□□ 1.32
CLPX-203ENST00000558958 HOXB7P09629 217 aa23.29■■□□□ 1.32
CLPX-203ENST00000558958 KCPQ6ZWJ8 1503 aa23.28■■□□□ 1.32
CLPX-203ENST00000558958 UBR2Q8IWV8 1755 aa23.28■■□□□ 1.32
CLPX-203ENST00000558958 NHSQ6T4R5 1651 aa23.27■■□□□ 1.32
CLPX-203ENST00000558958 ALDH1L2Q3SY69 923 aa23.26■■□□□ 1.31
CLPX-203ENST00000558958 PTF1AQ7RTS3 328 aa23.26■■□□□ 1.31
CLPX-203ENST00000558958 SUPT16HQ9Y5B9 1047 aaKnown RBP23.26■■□□□ 1.31
CLPX-203ENST00000558958 SBF2Q86WG5 1849 aa23.26■■□□□ 1.31
CLPX-203ENST00000558958 PTCD1O75127 700 aaKnown RBP23.25■■□□□ 1.31
CLPX-203ENST00000558958 SSH1Q8WYL5 1049 aa23.25■■□□□ 1.31
CLPX-203ENST00000558958 BCAR3O75815 825 aa23.24■■□□□ 1.31
CLPX-203ENST00000558958 SNRPA1P09661 255 aaKnown RBP23.24■■□□□ 1.31
CLPX-203ENST00000558958 PRAMEF22A3QJZ6 481 aa23.24■■□□□ 1.31
CLPX-203ENST00000558958 BCL11BQ9C0K0 894 aaPredicted RBP23.24■■□□□ 1.31
CLPX-203ENST00000558958 RNF123Q5XPI4 1314 aa23.23■■□□□ 1.31
CLPX-203ENST00000558958 SMARCC1Q92922 1105 aaPredicted RBP23.23■■□□□ 1.31
CLPX-203ENST00000558958 BCL2L13Q9BXK5 485 aa23.23■■□□□ 1.31
CLPX-203ENST00000558958 SMC4Q9NTJ3 1288 aa23.23■■□□□ 1.31
CLPX-203ENST00000558958 EP400Q96L91 3159 aa23.22■■□□□ 1.31
CLPX-203ENST00000558958 HDGFL1Q5TGJ6 251 aa23.22■■□□□ 1.31
CLPX-203ENST00000558958 CCDC30Q5VVM6 783 aa23.22■■□□□ 1.31
CLPX-203ENST00000558958 VSIG10Q8N0Z9 540 aa23.22■■□□□ 1.31
CLPX-203ENST00000558958 CHMP4AQ9BY43 222 aa23.22■■□□□ 1.31
CLPX-203ENST00000558958 RBM42Q9BTD8 480 aaKnown RBP23.21■■□□□ 1.31
CLPX-203ENST00000558958 PALLDQ8WX93 1383 aa23.2■■□□□ 1.31
CLPX-203ENST00000558958 BTAF1O14981 1849 aa23.2■■□□□ 1.3
CLPX-203ENST00000558958 TCERG1O14776 1098 aaKnown RBP23.2■■□□□ 1.3
CLPX-203ENST00000558958 EIF2S2P20042 333 aaKnown RBP23.2■■□□□ 1.3
CLPX-203ENST00000558958 BRPF1P55201 1214 aaPredicted RBP23.2■■□□□ 1.3
CLPX-203ENST00000558958 C5P01031 1676 aa23.19■■□□□ 1.3
CLPX-203ENST00000558958 MRPL50Q8N5N7 158 aaKnown RBP23.19■■□□□ 1.3
CLPX-203ENST00000558958 SLC4A9Q96Q91 983 aa23.19■■□□□ 1.3
CLPX-203ENST00000558958 USP16Q9Y5T5 823 aa23.19■■□□□ 1.3
CLPX-203ENST00000558958 TRIM37O94972 964 aa23.18■■□□□ 1.3
CLPX-203ENST00000558958 RRP1P56182 461 aaKnown RBP23.18■■□□□ 1.3
CLPX-203ENST00000558958 NECTIN2Q92692 538 aa23.18■■□□□ 1.3
CLPX-203ENST00000558958 STK31Q9BXU1 1019 aa23.17■■□□□ 1.3
CLPX-203ENST00000558958 LOC102724428A0A0B4J2F2 783 aa23.17■■□□□ 1.3
CLPX-203ENST00000558958 SIK1P57059 783 aa23.17■■□□□ 1.3
CLPX-203ENST00000558958 TEX13AQ9BXU3 409 aaPredicted RBP23.17■■□□□ 1.3
CLPX-203ENST00000558958 SLC4A2P04920 1241 aa23.16■■□□□ 1.3
CLPX-203ENST00000558958 DNAJC10Q8IXB1 793 aa23.15■■□□□ 1.3
CLPX-203ENST00000558958 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.15■■□□□ 1.3
CLPX-203ENST00000558958 LAMB4A4D0S4 1761 aa23.14■■□□□ 1.3
CLPX-203ENST00000558958 KIF16BQ96L93 1317 aa23.14■■□□□ 1.29
CLPX-203ENST00000558958 PLIN1O60240 522 aa23.14■■□□□ 1.29
CLPX-203ENST00000558958 CHPF2Q9P2E5 772 aa23.14■■□□□ 1.29
CLPX-203ENST00000558958 DBF4Q9UBU7 674 aaPredicted RBP23.14■■□□□ 1.29
CLPX-203ENST00000558958 FRAT1Q92837 279 aaPredicted RBP23.13■■□□□ 1.29
CLPX-203ENST00000558958 NOB1Q9ULX3 412 aaKnown RBP23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 358.6 ms