RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 OGFOD1Q8N543 542 aa7.59□□□□□ -1.19
VPS13C-207ENST00000558919 DNAAF2Q9NVR5 837 aaKnown RBP7.59□□□□□ -1.19
VPS13C-207ENST00000558919 BACH1O14867 736 aa7.58□□□□□ -1.2
VPS13C-207ENST00000558919 PPFIA3O75145 1194 aa7.58□□□□□ -1.2
VPS13C-207ENST00000558919 WFS1O76024 890 aa7.58□□□□□ -1.2
VPS13C-207ENST00000558919 SMTNP53814 917 aa7.58□□□□□ -1.2
VPS13C-207ENST00000558919 POU4F2Q12837 409 aa7.58□□□□□ -1.2
VPS13C-207ENST00000558919 TLR1Q15399 786 aa7.58□□□□□ -1.2
VPS13C-207ENST00000558919 KANK4Q5T7N3 995 aaPredicted RBP7.58□□□□□ -1.2
VPS13C-207ENST00000558919 NBPF10Q6P3W6 841 aaKnown RBP7.58□□□□□ -1.2
VPS13C-207ENST00000558919 PPARGC1BQ86YN6 1023 aaKnown RBP7.58□□□□□ -1.2
VPS13C-207ENST00000558919 NBPF15Q8N660 670 aa7.58□□□□□ -1.2
VPS13C-207ENST00000558919 CCDC155Q8N6L0 562 aa7.58□□□□□ -1.2
VPS13C-207ENST00000558919 VRTNQ9H8Y1 702 aa7.58□□□□□ -1.2
VPS13C-207ENST00000558919 SENP3-EIF4A1A0A087X0R7 540 aa7.57□□□□□ -1.2
VPS13C-207ENST00000558919 RHOQP17081 205 aa7.57□□□□□ -1.2
VPS13C-207ENST00000558919 MTFR1Q15390 333 aa7.57□□□□□ -1.2
VPS13C-207ENST00000558919 CCDC102BQ68D86 513 aa7.57□□□□□ -1.2
VPS13C-207ENST00000558919 TMEM214Q6NUQ4 689 aaKnown RBP7.57□□□□□ -1.2
VPS13C-207ENST00000558919 TAS1R3Q7RTX0 852 aa7.57□□□□□ -1.2
VPS13C-207ENST00000558919 SIX5Q8N196 739 aa7.57□□□□□ -1.2
VPS13C-207ENST00000558919 ZNF358Q9NW07 568 aa7.57□□□□□ -1.2
VPS13C-207ENST00000558919 SERPINA10Q9UK55 444 aa7.57□□□□□ -1.2
VPS13C-207ENST00000558919 KIAA1024Q9UPX6 916 aa7.57□□□□□ -1.2
VPS13C-207ENST00000558919 RASA1P20936 1047 aa7.56□□□□□ -1.2
VPS13C-207ENST00000558919 GNASQ5JWF2 1037 aa7.56□□□□□ -1.2
VPS13C-207ENST00000558919 LCE2AQ5TA79 106 aaPredicted RBP7.56□□□□□ -1.2
VPS13C-207ENST00000558919 LARP1Q6PKG0 1096 aaKnown RBP7.56□□□□□ -1.2
VPS13C-207ENST00000558919 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.56□□□□□ -1.2
VPS13C-207ENST00000558919 TPCN2Q8NHX9 752 aa7.56□□□□□ -1.2
VPS13C-207ENST00000558919 RHBDD1Q8TEB9 315 aa7.56□□□□□ -1.2
VPS13C-207ENST00000558919 SERTAD1Q9UHV2 236 aa7.56□□□□□ -1.2
VPS13C-207ENST00000558919 A6NJY4 79 aa7.55□□□□□ -1.2
VPS13C-207ENST00000558919 ARID3CA6NKF2 412 aa7.55□□□□□ -1.2
VPS13C-207ENST00000558919 FAM196BA6NMK8 535 aa7.55□□□□□ -1.2
VPS13C-207ENST00000558919 M0R2N6 131 aa7.55□□□□□ -1.2
VPS13C-207ENST00000558919 CDK2AP1O14519 115 aa7.55□□□□□ -1.2
VPS13C-207ENST00000558919 DKK1O94907 266 aa7.55□□□□□ -1.2
VPS13C-207ENST00000558919 VEGFBP49765 207 aa7.55□□□□□ -1.2
VPS13C-207ENST00000558919 IRF7Q92985 503 aa7.55□□□□□ -1.2
VPS13C-207ENST00000558919 CCDC97Q96F63 343 aaPredicted RBP7.55□□□□□ -1.2
VPS13C-207ENST00000558919 DYRK1BQ9Y463 629 aa7.55□□□□□ -1.2
VPS13C-207ENST00000558919 RBM19Q9Y4C8 960 aaKnown RBP7.55□□□□□ -1.2
VPS13C-207ENST00000558919 VSIG8P0DPA2 414 aa7.54□□□□□ -1.2
VPS13C-207ENST00000558919 ITGA6P23229 1130 aa7.54□□□□□ -1.2
VPS13C-207ENST00000558919 NANOS1Q8WY41 292 aaKnown RBP7.54□□□□□ -1.2
VPS13C-207ENST00000558919 TIMMDC1Q9NPL8 285 aa7.54□□□□□ -1.2
VPS13C-207ENST00000558919 USP17L15C9J2P7 530 aa7.53□□□□□ -1.2
VPS13C-207ENST00000558919 USP17L10C9JJH3 530 aa7.53□□□□□ -1.2
VPS13C-207ENST00000558919 USP17L13C9JLJ4 530 aa7.53□□□□□ -1.2
VPS13C-207ENST00000558919 USP17L12C9JPN9 530 aa7.53□□□□□ -1.2
VPS13C-207ENST00000558919 USP17L11C9JVI0 530 aa7.53□□□□□ -1.2
VPS13C-207ENST00000558919 USP17L21D6R901 530 aa7.53□□□□□ -1.2
VPS13C-207ENST00000558919 USP17L18D6R9N7 530 aa7.53□□□□□ -1.2
VPS13C-207ENST00000558919 USP17L22D6RA61 530 aa7.53□□□□□ -1.2
VPS13C-207ENST00000558919 USP17L17D6RBQ6 530 aa7.53□□□□□ -1.2
VPS13C-207ENST00000558919 USP17L19D6RCP7 530 aa7.53□□□□□ -1.2
VPS13C-207ENST00000558919 USP17L20D6RJB6 530 aa7.53□□□□□ -1.2
VPS13C-207ENST00000558919 USP17L24Q0WX57 530 aa7.53□□□□□ -1.2
VPS13C-207ENST00000558919 PTK7Q13308 1070 aa7.53□□□□□ -1.2
VPS13C-207ENST00000558919 C4orf17Q53FE4 359 aa7.53□□□□□ -1.2
VPS13C-207ENST00000558919 ZNF594Q96JF6 807 aaPredicted RBP7.53□□□□□ -1.2
VPS13C-207ENST00000558919 IQSEC3Q9UPP2 1182 aaPredicted RBP7.53□□□□□ -1.2
VPS13C-207ENST00000558919 RFX1P22670 979 aa7.52□□□□□ -1.21
VPS13C-207ENST00000558919 EPHA4P54764 986 aa7.52□□□□□ -1.21
VPS13C-207ENST00000558919 CRTC2Q53ET0 693 aaPredicted RBP7.52□□□□□ -1.21
VPS13C-207ENST00000558919 GMCL1Q96IK5 515 aa7.52□□□□□ -1.21
VPS13C-207ENST00000558919 NIFKQ9BYG3 293 aaKnown RBP7.52□□□□□ -1.21
VPS13C-207ENST00000558919 SCHIP1Q9P0W5 487 aaPredicted RBP7.52□□□□□ -1.21
VPS13C-207ENST00000558919 STK17AQ9UEE5 414 aa7.52□□□□□ -1.21
VPS13C-207ENST00000558919 A0A1B0GTH6 734 aa7.51□□□□□ -1.21
VPS13C-207ENST00000558919 PHKA2P46019 1235 aa7.51□□□□□ -1.21
VPS13C-207ENST00000558919 SEC13P55735 322 aa7.51□□□□□ -1.21
VPS13C-207ENST00000558919 FOXK2Q01167 660 aa7.51□□□□□ -1.21
VPS13C-207ENST00000558919 LCE2CQ5TA81 110 aa7.51□□□□□ -1.21
VPS13C-207ENST00000558919 ANKMY2Q8IV38 441 aa7.51□□□□□ -1.21
VPS13C-207ENST00000558919 ZNF295-AS1Q8N0V1 137 aa7.51□□□□□ -1.21
VPS13C-207ENST00000558919 ERBB4Q15303 1308 aa7.51□□□□□ -1.21
VPS13C-207ENST00000558919 SFI1A8K8P3 1242 aa7.5□□□□□ -1.21
VPS13C-207ENST00000558919 F11P03951 625 aa7.5□□□□□ -1.21
VPS13C-207ENST00000558919 SRPK2P78362 688 aaKnown RBP7.5□□□□□ -1.21
VPS13C-207ENST00000558919 DPYDQ12882 1025 aa7.5□□□□□ -1.21
VPS13C-207ENST00000558919 SV2AQ7L0J3 742 aa7.5□□□□□ -1.21
VPS13C-207ENST00000558919 TNS4Q8IZW8 715 aa7.5□□□□□ -1.21
VPS13C-207ENST00000558919 GAS2L1Q99501 681 aaPredicted RBP7.5□□□□□ -1.21
VPS13C-207ENST00000558919 TIMELESSQ9UNS1 1208 aa7.5□□□□□ -1.21
VPS13C-207ENST00000558919 H7C1W4 665 aa7.49□□□□□ -1.21
VPS13C-207ENST00000558919 TRIM22Q8IYM9 498 aa7.49□□□□□ -1.21
VPS13C-207ENST00000558919 CCDC82Q8N4S0 544 aa7.49□□□□□ -1.21
VPS13C-207ENST00000558919 C1orf115Q9H7X2 142 aa7.49□□□□□ -1.21
VPS13C-207ENST00000558919 USP3Q9Y6I4 520 aa7.49□□□□□ -1.21
VPS13C-207ENST00000558919 WIPF1O43516 503 aa7.48□□□□□ -1.21
VPS13C-207ENST00000558919 PLA2G4AP47712 749 aa7.48□□□□□ -1.21
VPS13C-207ENST00000558919 ELOAQ14241 798 aaKnown RBP7.48□□□□□ -1.21
VPS13C-207ENST00000558919 TEAD4Q15561 434 aa7.48□□□□□ -1.21
VPS13C-207ENST00000558919 CDCA8Q53HL2 280 aa7.48□□□□□ -1.21
VPS13C-207ENST00000558919 RIPOR1Q6ZS17 1223 aa7.48□□□□□ -1.21
VPS13C-207ENST00000558919 SLC9A9Q8IVB4 645 aa7.48□□□□□ -1.21
VPS13C-207ENST00000558919 VWA5B2Q8N398 1253 aa7.48□□□□□ -1.21
VPS13C-207ENST00000558919 TSEN2Q8NCE0 465 aaKnown RBP7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms