RNA–Protein interactions for RNA: ENST00000558880.1

TRAF3-206, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 374 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-206ENST00000558880 TMC1Q8TDI8 760 aa10.02□□□□□ -0.81
TRAF3-206ENST00000558880 POLR3GLQ9BT43 218 aa10.02□□□□□ -0.81
TRAF3-206ENST00000558880 SLC4A5Q9BY07 1137 aa10.02□□□□□ -0.81
TRAF3-206ENST00000558880 TTC21BQ7Z4L5 1316 aa10.01□□□□□ -0.81
TRAF3-206ENST00000558880 NRKQ7Z2Y5 1582 aa10.01□□□□□ -0.81
TRAF3-206ENST00000558880 EP400Q96L91 3159 aa10□□□□□ -0.81
TRAF3-206ENST00000558880 FYB1O15117 783 aa10□□□□□ -0.81
TRAF3-206ENST00000558880 SF3B2Q13435 895 aaKnown RBP10□□□□□ -0.81
TRAF3-206ENST00000558880 SMYD5Q6GMV2 418 aa10□□□□□ -0.81
TRAF3-206ENST00000558880 KRT28Q7Z3Y7 464 aa10□□□□□ -0.81
TRAF3-206ENST00000558880 KIAA1468Q9P260 1216 aa10□□□□□ -0.81
TRAF3-206ENST00000558880 ATRNO75882 1429 aa9.99□□□□□ -0.81
TRAF3-206ENST00000558880 EDC4Q6P2E9 1401 aaKnown RBP9.99□□□□□ -0.81
TRAF3-206ENST00000558880 NSD3Q9BZ95 1437 aa9.99□□□□□ -0.81
TRAF3-206ENST00000558880 TRIM6-TRIM34B2RNG4 842 aa9.99□□□□□ -0.81
TRAF3-206ENST00000558880 NME9Q86XW9 330 aa9.99□□□□□ -0.81
TRAF3-206ENST00000558880 NGDNQ8NEJ9 315 aaKnown RBP9.99□□□□□ -0.81
TRAF3-206ENST00000558880 RNF166Q96A37 237 aaPredicted RBP9.99□□□□□ -0.81
TRAF3-206ENST00000558880 CDCA7LQ96GN5 454 aa9.99□□□□□ -0.81
TRAF3-206ENST00000558880 NPDC1Q9NQX5 325 aaPredicted RBP9.99□□□□□ -0.81
TRAF3-206ENST00000558880 TSKSQ9UJT2 592 aa9.99□□□□□ -0.81
TRAF3-206ENST00000558880 SPATA31A3Q5VYP0 1347 aa9.99□□□□□ -0.81
TRAF3-206ENST00000558880 SBNO1A3KN83 1393 aa9.99□□□□□ -0.81
TRAF3-206ENST00000558880 KTN1Q86UP2 1357 aaKnown RBP9.99□□□□□ -0.81
TRAF3-206ENST00000558880 TRPM3Q9HCF6 1732 aaPredicted RBP9.99□□□□□ -0.81
TRAF3-206ENST00000558880 PRSS12P56730 875 aa9.98□□□□□ -0.81
TRAF3-206ENST00000558880 TERF2IPQ9NYB0 399 aa9.98□□□□□ -0.81
TRAF3-206ENST00000558880 FAM198AQ9UFP1 575 aa9.98□□□□□ -0.81
TRAF3-206ENST00000558880 KIF1AQ12756 1690 aa9.98□□□□□ -0.81
TRAF3-206ENST00000558880 NPHP3Q7Z494 1330 aa9.98□□□□□ -0.81
TRAF3-206ENST00000558880 MON2Q7Z3U7 1717 aa9.98□□□□□ -0.81
TRAF3-206ENST00000558880 USP31Q70CQ4 1352 aa9.98□□□□□ -0.81
TRAF3-206ENST00000558880 OVOS2A0A0J9YW53 1432 aa9.98□□□□□ -0.81
TRAF3-206ENST00000558880 BLMP54132 1417 aaPredicted RBP9.98□□□□□ -0.81
TRAF3-206ENST00000558880 OVOS2Q6IE36 1432 aa9.98□□□□□ -0.81
TRAF3-206ENST00000558880 AKAP12Q02952 1782 aa9.97□□□□□ -0.81
TRAF3-206ENST00000558880 BHMG1C9JSJ3 638 aaPredicted RBP9.97□□□□□ -0.81
TRAF3-206ENST00000558880 YY1P25490 414 aa9.97□□□□□ -0.81
TRAF3-206ENST00000558880 SEPT9Q9UHD8 586 aaPredicted RBP9.97□□□□□ -0.81
TRAF3-206ENST00000558880 RABGEF1Q9UJ41 708 aa9.97□□□□□ -0.81
TRAF3-206ENST00000558880 BRD4O60885 1362 aaPredicted RBP9.97□□□□□ -0.81
TRAF3-206ENST00000558880 NPC1L1Q9UHC9 1359 aa9.97□□□□□ -0.81
TRAF3-206ENST00000558880 FBLN1P23142 703 aa9.96□□□□□ -0.82
TRAF3-206ENST00000558880 HDGFL2Q7Z4V5 671 aaPredicted RBP9.96□□□□□ -0.82
TRAF3-206ENST00000558880 FNBP4Q8N3X1 1017 aaPredicted RBP9.96□□□□□ -0.82
TRAF3-206ENST00000558880 MRPL50Q8N5N7 158 aaKnown RBP9.96□□□□□ -0.82
TRAF3-206ENST00000558880 ITSN1Q15811 1721 aa9.96□□□□□ -0.82
TRAF3-206ENST00000558880 PSME1Q06323 249 aa9.95□□□□□ -0.82
TRAF3-206ENST00000558880 PADI6Q6TGC4 694 aa9.95□□□□□ -0.82
TRAF3-206ENST00000558880 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.95□□□□□ -0.82
TRAF3-206ENST00000558880 GJD4Q96KN9 370 aaPredicted RBP9.95□□□□□ -0.82
TRAF3-206ENST00000558880 NBPF3Q9H094 633 aa9.95□□□□□ -0.82
TRAF3-206ENST00000558880 GGNBP2Q9H3C7 697 aa9.95□□□□□ -0.82
TRAF3-206ENST00000558880 USP19O94966 1318 aa9.95□□□□□ -0.82
TRAF3-206ENST00000558880 TNS3Q68CZ2 1445 aa9.95□□□□□ -0.82
TRAF3-206ENST00000558880 BRWD3Q6RI45 1802 aa9.94□□□□□ -0.82
TRAF3-206ENST00000558880 MARF1Q9Y4F3 1742 aaKnown RBP9.94□□□□□ -0.82
TRAF3-206ENST00000558880 PIK3C2AO00443 1686 aa9.94□□□□□ -0.82
TRAF3-206ENST00000558880 ALS2Q96Q42 1657 aa9.94□□□□□ -0.82
TRAF3-206ENST00000558880 TTC21AQ8NDW8 1320 aa9.94□□□□□ -0.82
TRAF3-206ENST00000558880 C3orf80F5H4A9 247 aa9.94□□□□□ -0.82
TRAF3-206ENST00000558880 SMAPO00193 183 aa9.94□□□□□ -0.82
TRAF3-206ENST00000558880 PTGDRQ13258 359 aa9.94□□□□□ -0.82
TRAF3-206ENST00000558880 KCTD12Q96CX2 325 aaKnown RBP9.94□□□□□ -0.82
TRAF3-206ENST00000558880 PARD3Q8TEW0 1356 aa9.93□□□□□ -0.82
TRAF3-206ENST00000558880 GOLGA8CPA6NN73 597 aa9.93□□□□□ -0.82
TRAF3-206ENST00000558880 NUTM2GQ5VZR2 741 aa9.93□□□□□ -0.82
TRAF3-206ENST00000558880 PACS2Q86VP3 889 aa9.93□□□□□ -0.82
TRAF3-206ENST00000558880 SLIT3O75094 1523 aa9.92□□□□□ -0.82
TRAF3-206ENST00000558880 BCL9LQ86UU0 1499 aa9.92□□□□□ -0.82
TRAF3-206ENST00000558880 TULP1O00294 542 aaPredicted RBP9.92□□□□□ -0.82
TRAF3-206ENST00000558880 CABLES1Q8TDN4 633 aa9.92□□□□□ -0.82
TRAF3-206ENST00000558880 USP54Q70EL1 1684 aa9.92□□□□□ -0.82
TRAF3-206ENST00000558880 CGNL1Q0VF96 1302 aa9.91□□□□□ -0.82
TRAF3-206ENST00000558880 ONECUT3O60422 494 aaPredicted RBP9.91□□□□□ -0.82
TRAF3-206ENST00000558880 FCHSD2O94868 740 aa9.91□□□□□ -0.82
TRAF3-206ENST00000558880 CC2D1BQ5T0F9 858 aaKnown RBP9.91□□□□□ -0.82
TRAF3-206ENST00000558880 ABTB2Q8N961 1025 aa9.91□□□□□ -0.82
TRAF3-206ENST00000558880 PRKRIP1Q9H875 184 aaPredicted RBP9.91□□□□□ -0.82
TRAF3-206ENST00000558880 KNSTRNQ9Y448 316 aa9.91□□□□□ -0.82
TRAF3-206ENST00000558880 NFAT5O94916 1531 aa9.91□□□□□ -0.82
TRAF3-206ENST00000558880 CRYBG1Q9Y4K1 1723 aa9.9□□□□□ -0.82
TRAF3-206ENST00000558880 NSD2O96028 1365 aa9.9□□□□□ -0.82
TRAF3-206ENST00000558880 A0A0G2JS52 829 aa9.9□□□□□ -0.82
TRAF3-206ENST00000558880 MYT1Q01538 1121 aa9.9□□□□□ -0.82
TRAF3-206ENST00000558880 CCDC184Q52MB2 194 aa9.9□□□□□ -0.82
TRAF3-206ENST00000558880 GPIHBP1Q8IV16 184 aa9.9□□□□□ -0.82
TRAF3-206ENST00000558880 PNMA3Q9UL41 463 aa9.9□□□□□ -0.82
TRAF3-206ENST00000558880 GCP02774 474 aa9.89□□□□□ -0.83
TRAF3-206ENST00000558880 BAG6P46379 1132 aa9.89□□□□□ -0.83
TRAF3-206ENST00000558880 FAM161AQ3B820 660 aa9.89□□□□□ -0.83
TRAF3-206ENST00000558880 IFFO2Q5TF58 517 aa9.89□□□□□ -0.83
TRAF3-206ENST00000558880 NUDT18Q6ZVK8 323 aa9.89□□□□□ -0.83
TRAF3-206ENST00000558880 SEPT12Q8IYM1 358 aa9.89□□□□□ -0.83
TRAF3-206ENST00000558880 TATDN2Q93075 761 aa9.89□□□□□ -0.83
TRAF3-206ENST00000558880 WNT2BQ93097 391 aa9.89□□□□□ -0.83
TRAF3-206ENST00000558880 POLKQ9UBT6 870 aa9.89□□□□□ -0.83
TRAF3-206ENST00000558880 CCDC9Q9Y3X0 531 aaKnown RBP9.89□□□□□ -0.83
TRAF3-206ENST00000558880 COL22A1Q8NFW1 1626 aaPredicted RBP9.89□□□□□ -0.83
TRAF3-206ENST00000558880 ARHGEF10O15013 1369 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms