RNA–Protein interactions for RNA: ENST00000558400.1

TPM1-213, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-213ENST00000558400 CCNL1Q9UK58 526 aaPredicted RBP11.33□□□□□ -0.6
TPM1-213ENST00000558400 NEFMP07197 916 aa11.32□□□□□ -0.6
TPM1-213ENST00000558400 U2AF1L5P0DN76 240 aaPredicted RBP11.32□□□□□ -0.6
TPM1-213ENST00000558400 U2AF1Q01081 240 aaKnown RBP eCLIP11.32□□□□□ -0.6
TPM1-213ENST00000558400 GAS2L2Q8NHY3 880 aa11.32□□□□□ -0.6
TPM1-213ENST00000558400 FHDC1Q9C0D6 1143 aaPredicted RBP11.32□□□□□ -0.6
TPM1-213ENST00000558400 LRRC4BQ9NT99 713 aa11.32□□□□□ -0.6
TPM1-213ENST00000558400 NHSQ6T4R5 1651 aa11.32□□□□□ -0.6
TPM1-213ENST00000558400 ZNF316A6NFI3 1004 aaPredicted RBP11.31□□□□□ -0.6
TPM1-213ENST00000558400 ZBTB7AO95365 584 aa11.31□□□□□ -0.6
TPM1-213ENST00000558400 MTHFSDQ2M296 383 aaKnown RBP11.31□□□□□ -0.6
TPM1-213ENST00000558400 NFATC2IPQ8NCF5 419 aa11.3□□□□□ -0.6
TPM1-213ENST00000558400 SLC16A10Q8TF71 515 aa11.3□□□□□ -0.6
TPM1-213ENST00000558400 PDGFDQ9GZP0 370 aaPredicted RBP11.3□□□□□ -0.6
TPM1-213ENST00000558400 TFCP2L1Q9NZI6 479 aa11.3□□□□□ -0.6
TPM1-213ENST00000558400 PALLDQ8WX93 1383 aa11.29□□□□□ -0.6
TPM1-213ENST00000558400 MAP3K5Q99683 1374 aa11.29□□□□□ -0.6
TPM1-213ENST00000558400 LOC102724428A0A0B4J2F2 783 aa11.29□□□□□ -0.6
TPM1-213ENST00000558400 GNAT3A8MTJ3 354 aa11.29□□□□□ -0.6
TPM1-213ENST00000558400 SIK1P57059 783 aa11.29□□□□□ -0.6
TPM1-213ENST00000558400 FLAD1Q8NFF5 587 aa11.29□□□□□ -0.6
TPM1-213ENST00000558400 AKT1S1Q96B36 256 aa11.29□□□□□ -0.6
TPM1-213ENST00000558400 ATG3Q9NT62 314 aa11.29□□□□□ -0.6
TPM1-213ENST00000558400 ASAP1Q9ULH1 1129 aa11.29□□□□□ -0.6
TPM1-213ENST00000558400 PKD1L3Q7Z443 1732 aa11.29□□□□□ -0.6
TPM1-213ENST00000558400 RNMTO43148 476 aaKnown RBP11.28□□□□□ -0.6
TPM1-213ENST00000558400 PRKAR2BP31323 418 aa11.28□□□□□ -0.6
TPM1-213ENST00000558400 RSPH6AQ9H0K4 717 aa11.28□□□□□ -0.6
TPM1-213ENST00000558400 MYBBP1AQ9BQG0 1328 aaKnown RBP11.28□□□□□ -0.6
TPM1-213ENST00000558400 COL3A1P02461 1466 aaPredicted RBP11.27□□□□□ -0.6
TPM1-213ENST00000558400 HTATSF1O43719 755 aaKnown RBP11.27□□□□□ -0.61
TPM1-213ENST00000558400 ATP6V1AP38606 617 aa11.27□□□□□ -0.61
TPM1-213ENST00000558400 PRKRIP1Q9H875 184 aaPredicted RBP11.27□□□□□ -0.61
TPM1-213ENST00000558400 SLC52A2Q9HAB3 445 aa11.27□□□□□ -0.61
TPM1-213ENST00000558400 LGR6Q9HBX8 967 aa11.27□□□□□ -0.61
TPM1-213ENST00000558400 ATF5Q9Y2D1 282 aaPredicted RBP11.27□□□□□ -0.61
TPM1-213ENST00000558400 BTAF1O14981 1849 aa11.27□□□□□ -0.61
TPM1-213ENST00000558400 COL24A1Q17RW2 1714 aa11.26□□□□□ -0.61
TPM1-213ENST00000558400 KCNQ4P56696 695 aa11.26□□□□□ -0.61
TPM1-213ENST00000558400 RTF1Q92541 710 aaKnown RBP11.26□□□□□ -0.61
TPM1-213ENST00000558400 PHACTR3Q96KR7 559 aa11.26□□□□□ -0.61
TPM1-213ENST00000558400 SGIP1Q9BQI5 828 aa11.26□□□□□ -0.61
TPM1-213ENST00000558400 RBM42Q9BTD8 480 aaKnown RBP11.26□□□□□ -0.61
TPM1-213ENST00000558400 MTFR1LQ9H019 292 aa11.26□□□□□ -0.61
TPM1-213ENST00000558400 TEFQ10587 303 aa11.25□□□□□ -0.61
TPM1-213ENST00000558400 ZNF827Q17R98 1081 aa11.25□□□□□ -0.61
TPM1-213ENST00000558400 PAPPAQ13219 1627 aa11.24□□□□□ -0.61
TPM1-213ENST00000558400 RC3H1Q5TC82 1133 aaKnown RBP11.24□□□□□ -0.61
TPM1-213ENST00000558400 IL17REQ8NFR9 667 aa11.24□□□□□ -0.61
TPM1-213ENST00000558400 AK7Q96M32 723 aa11.24□□□□□ -0.61
TPM1-213ENST00000558400 KDM6AO15550 1401 aaPredicted RBP11.24□□□□□ -0.61
TPM1-213ENST00000558400 QSER1Q2KHR3 1735 aa11.23□□□□□ -0.61
TPM1-213ENST00000558400 DOT1LQ8TEK3 1739 aa11.23□□□□□ -0.61
TPM1-213ENST00000558400 PTCD1O75127 700 aaKnown RBP11.23□□□□□ -0.61
TPM1-213ENST00000558400 SSFA2P28290 1259 aa11.22□□□□□ -0.61
TPM1-213ENST00000558400 GPR162Q16538 588 aa11.22□□□□□ -0.61
TPM1-213ENST00000558400 PNPLA7Q6ZV29 1317 aa11.22□□□□□ -0.61
TPM1-213ENST00000558400 TTC5Q8N0Z6 440 aa11.22□□□□□ -0.61
TPM1-213ENST00000558400 VSIG10Q8N0Z9 540 aa11.22□□□□□ -0.61
TPM1-213ENST00000558400 ARXQ96QS3 562 aa11.22□□□□□ -0.61
TPM1-213ENST00000558400 PLEKHF1Q96S99 279 aa11.22□□□□□ -0.61
TPM1-213ENST00000558400 TEX13AQ9BXU3 409 aaPredicted RBP11.22□□□□□ -0.61
TPM1-213ENST00000558400 MAPK8IP3Q9UPT6 1336 aa11.21□□□□□ -0.61
TPM1-213ENST00000558400 POLD1P28340 1107 aa11.21□□□□□ -0.61
TPM1-213ENST00000558400 ITPK1Q13572 414 aa11.21□□□□□ -0.61
TPM1-213ENST00000558400 WDR43Q15061 677 aaKnown RBP eCLIP11.21□□□□□ -0.61
TPM1-213ENST00000558400 COL23A1Q86Y22 540 aaPredicted RBP11.21□□□□□ -0.61
TPM1-213ENST00000558400 RTCBQ9Y3I0 505 aaKnown RBP11.21□□□□□ -0.61
TPM1-213ENST00000558400 ITGB4P16144 1822 aa11.21□□□□□ -0.62
TPM1-213ENST00000558400 ANP32CO43423 234 aa11.2□□□□□ -0.62
TPM1-213ENST00000558400 HSPA6P17066 643 aa11.2□□□□□ -0.62
TPM1-213ENST00000558400 TAF7Q15545 349 aaPredicted RBP11.2□□□□□ -0.62
TPM1-213ENST00000558400 NFE2L2Q16236 605 aa11.2□□□□□ -0.62
TPM1-213ENST00000558400 TRAPPC3LQ5T215 181 aa11.2□□□□□ -0.62
TPM1-213ENST00000558400 ZNF790Q6PG37 636 aa11.2□□□□□ -0.62
TPM1-213ENST00000558400 LINC00116Q8NCU8 138 aa11.2□□□□□ -0.62
TPM1-213ENST00000558400 SLC4A9Q96Q91 983 aa11.2□□□□□ -0.62
TPM1-213ENST00000558400 LY75O60449 1722 aa11.2□□□□□ -0.62
TPM1-213ENST00000558400 CEMIPQ8WUJ3 1361 aa11.19□□□□□ -0.62
TPM1-213ENST00000558400 CNTNAP4Q9C0A0 1308 aa11.19□□□□□ -0.62
TPM1-213ENST00000558400 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.19□□□□□ -0.62
TPM1-213ENST00000558400 BTBD11A6QL63 1104 aa11.19□□□□□ -0.62
TPM1-213ENST00000558400 GNPATO15228 680 aa11.19□□□□□ -0.62
TPM1-213ENST00000558400 RPS6KA4O75676 772 aa11.19□□□□□ -0.62
TPM1-213ENST00000558400 STARD3NLO95772 234 aa11.19□□□□□ -0.62
TPM1-213ENST00000558400 SLC39A6Q13433 755 aa11.19□□□□□ -0.62
TPM1-213ENST00000558400 PNISRQ8TF01 805 aaKnown RBP11.19□□□□□ -0.62
TPM1-213ENST00000558400 TUBGCP6Q96RT7 1819 aa11.19□□□□□ -0.62
TPM1-213ENST00000558400 ATP10DQ9P241 1426 aa11.18□□□□□ -0.62
TPM1-213ENST00000558400 TOGARAM1Q9Y4F4 1720 aa11.18□□□□□ -0.62
TPM1-213ENST00000558400 GOLGB1Q14789 3259 aaKnown RBP11.18□□□□□ -0.62
TPM1-213ENST00000558400 LMOD3Q0VAK6 560 aa11.18□□□□□ -0.62
TPM1-213ENST00000558400 RUNDC1Q96C34 613 aa11.18□□□□□ -0.62
TPM1-213ENST00000558400 FMNL2Q96PY5 1086 aa11.18□□□□□ -0.62
TPM1-213ENST00000558400 ABCB7O75027 752 aa11.17□□□□□ -0.62
TPM1-213ENST00000558400 RFC4P35249 363 aa11.17□□□□□ -0.62
TPM1-213ENST00000558400 CRKLP46109 303 aaKnown RBP11.17□□□□□ -0.62
TPM1-213ENST00000558400 RIPK4P57078 832 aa11.17□□□□□ -0.62
TPM1-213ENST00000558400 MCM10Q7L590 875 aa11.17□□□□□ -0.62
TPM1-213ENST00000558400 NLGN1Q8N2Q7 840 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms