RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 NCLP19338 710 aaKnown RBP15.84■□□□□ 0.13
LDLR-207ENST00000558013 IL1RAPL2Q9NP60 686 aa15.84■□□□□ 0.13
LDLR-207ENST00000558013 PALD1Q9ULE6 856 aa15.84■□□□□ 0.13
LDLR-207ENST00000558013 GNAT3A8MTJ3 354 aa15.84■□□□□ 0.13
LDLR-207ENST00000558013 ERC2O15083 957 aa15.84■□□□□ 0.13
LDLR-207ENST00000558013 ABTB2Q8N961 1025 aa15.84■□□□□ 0.13
LDLR-207ENST00000558013 RILPL2Q969X0 211 aa15.84■□□□□ 0.13
LDLR-207ENST00000558013 ZDHHC9Q9Y397 364 aa15.84■□□□□ 0.13
LDLR-207ENST00000558013 RGPD8O14715 1765 aaPredicted RBP15.84■□□□□ 0.13
LDLR-207ENST00000558013 TOPAZ1Q8N9V7 1692 aa15.84■□□□□ 0.13
LDLR-207ENST00000558013 ZBTB7CA1YPR0 619 aa15.83■□□□□ 0.13
LDLR-207ENST00000558013 CASC1Q6TDU7 716 aa15.83■□□□□ 0.13
LDLR-207ENST00000558013 TTC21AQ8NDW8 1320 aa15.83■□□□□ 0.13
LDLR-207ENST00000558013 IL25Q9H293 177 aa15.83■□□□□ 0.12
LDLR-207ENST00000558013 NEK4P51957 841 aa15.83■□□□□ 0.12
LDLR-207ENST00000558013 TRIM6-TRIM34B2RNG4 842 aa15.82■□□□□ 0.12
LDLR-207ENST00000558013 MAP4K4O95819 1239 aaPredicted RBP15.82■□□□□ 0.12
LDLR-207ENST00000558013 EIF2S2P20042 333 aaKnown RBP15.82■□□□□ 0.12
LDLR-207ENST00000558013 LRRCC1Q9C099 1032 aa15.82■□□□□ 0.12
LDLR-207ENST00000558013 USP44Q9H0E7 712 aa15.82■□□□□ 0.12
LDLR-207ENST00000558013 REC8O95072 547 aa15.81■□□□□ 0.12
LDLR-207ENST00000558013 ANXA1P04083 346 aa15.81■□□□□ 0.12
LDLR-207ENST00000558013 CCDC30Q5VVM6 783 aa15.81■□□□□ 0.12
LDLR-207ENST00000558013 NALCNQ8IZF0 1738 aa15.81■□□□□ 0.12
LDLR-207ENST00000558013 CYP2E1P05181 493 aaPredicted RBP15.81■□□□□ 0.12
LDLR-207ENST00000558013 MX1P20591 662 aa15.81■□□□□ 0.12
LDLR-207ENST00000558013 CAVIN1Q6NZI2 390 aaKnown RBP15.81■□□□□ 0.12
LDLR-207ENST00000558013 KIF13AQ9H1H9 1805 aa15.81■□□□□ 0.12
LDLR-207ENST00000558013 SALL3Q9BXA9 1300 aa15.81■□□□□ 0.12
LDLR-207ENST00000558013 SKOR2Q2VWA4 1001 aaPredicted RBP15.81■□□□□ 0.12
LDLR-207ENST00000558013 NUTM1Q86Y26 1132 aa15.81■□□□□ 0.12
LDLR-207ENST00000558013 ST18O60284 1047 aa15.8■□□□□ 0.12
LDLR-207ENST00000558013 OSBPL3Q9H4L5 887 aa15.8■□□□□ 0.12
LDLR-207ENST00000558013 TBX22Q9Y458 520 aa15.8■□□□□ 0.12
LDLR-207ENST00000558013 KCNQ3O43525 872 aa15.8■□□□□ 0.12
LDLR-207ENST00000558013 PRPF40AO75400 957 aaKnown RBP15.8■□□□□ 0.12
LDLR-207ENST00000558013 LGR6Q9HBX8 967 aa15.8■□□□□ 0.12
LDLR-207ENST00000558013 ANO2Q9NQ90 1003 aa15.8■□□□□ 0.12
LDLR-207ENST00000558013 LMBRD1Q9NUN5 540 aa15.8■□□□□ 0.12
LDLR-207ENST00000558013 RBM27Q9P2N5 1060 aaKnown RBP15.8■□□□□ 0.12
LDLR-207ENST00000558013 GOLGA6L22H0YM25 854 aa15.79■□□□□ 0.12
LDLR-207ENST00000558013 ATP8B2P98198 1209 aa15.79■□□□□ 0.12
LDLR-207ENST00000558013 FOXD4L6Q3SYB3 417 aaPredicted RBP15.79■□□□□ 0.12
LDLR-207ENST00000558013 FOXD4L3Q6VB84 417 aaPredicted RBP15.79■□□□□ 0.12
LDLR-207ENST00000558013 CLEC17AQ6ZS10 378 aa15.79■□□□□ 0.12
LDLR-207ENST00000558013 ESYT1Q9BSJ8 1104 aa15.79■□□□□ 0.12
LDLR-207ENST00000558013 UPF3BQ9BZI7 483 aaKnown RBP15.79■□□□□ 0.12
LDLR-207ENST00000558013 KLHL40Q2TBA0 621 aa15.79■□□□□ 0.12
LDLR-207ENST00000558013 NSFL1CQ9UNZ2 370 aaKnown RBP15.79■□□□□ 0.12
LDLR-207ENST00000558013 TAF7Q15545 349 aaPredicted RBP15.78■□□□□ 0.12
LDLR-207ENST00000558013 HDGFL1Q5TGJ6 251 aa15.78■□□□□ 0.12
LDLR-207ENST00000558013 TMX3Q96JJ7 454 aa15.78■□□□□ 0.12
LDLR-207ENST00000558013 DTNBO60941 627 aa15.78■□□□□ 0.12
LDLR-207ENST00000558013 DIP2AQ14689 1571 aa15.77■□□□□ 0.12
LDLR-207ENST00000558013 PIK3C2AO00443 1686 aa15.77■□□□□ 0.12
LDLR-207ENST00000558013 GNAI3P08754 354 aa15.77■□□□□ 0.12
LDLR-207ENST00000558013 CHMLP26374 656 aa15.77■□□□□ 0.12
LDLR-207ENST00000558013 NUCB2P80303 420 aa15.77■□□□□ 0.12
LDLR-207ENST00000558013 NBPF7P0C2Y1 421 aaPredicted RBP15.77■□□□□ 0.11
LDLR-207ENST00000558013 NBPF6Q5VWK0 638 aa15.77■□□□□ 0.11
LDLR-207ENST00000558013 GPT2Q8TD30 523 aa15.77■□□□□ 0.11
LDLR-207ENST00000558013 NBPF4Q96M43 638 aa15.77■□□□□ 0.11
LDLR-207ENST00000558013 SETD1BQ9UPS6 1966 aaKnown RBP15.76■□□□□ 0.11
LDLR-207ENST00000558013 IBTKQ9P2D0 1353 aaPredicted RBP15.76■□□□□ 0.11
LDLR-207ENST00000558013 UBTFL1P0CB47 393 aaPredicted RBP15.76■□□□□ 0.11
LDLR-207ENST00000558013 MAP3K5Q99683 1374 aa15.76■□□□□ 0.11
LDLR-207ENST00000558013 ESPNB1AK53 854 aa15.76■□□□□ 0.11
LDLR-207ENST00000558013 PPP1R42Q7Z4L9 355 aa15.76■□□□□ 0.11
LDLR-207ENST00000558013 LARP6Q9BRS8 491 aaKnown RBP15.76■□□□□ 0.11
LDLR-207ENST00000558013 LRRC59Q96AG4 307 aaKnown RBP15.75■□□□□ 0.11
LDLR-207ENST00000558013 FMN2Q9NZ56 1722 aa15.75■□□□□ 0.11
LDLR-207ENST00000558013 SURF6O75683 361 aaKnown RBP15.75■□□□□ 0.11
LDLR-207ENST00000558013 CLCN1P35523 988 aa15.75■□□□□ 0.11
LDLR-207ENST00000558013 NASPP49321 788 aaPredicted RBP15.75■□□□□ 0.11
LDLR-207ENST00000558013 ZSCAN23Q3MJ62 389 aa15.75■□□□□ 0.11
LDLR-207ENST00000558013 CHPF2Q9P2E5 772 aa15.74■□□□□ 0.11
LDLR-207ENST00000558013 NWD1Q149M9 1564 aa15.74■□□□□ 0.11
LDLR-207ENST00000558013 XPCQ01831 940 aaPredicted RBP15.74■□□□□ 0.11
LDLR-207ENST00000558013 NAP1L5Q96NT1 182 aaPredicted RBP15.74■□□□□ 0.11
LDLR-207ENST00000558013 HTATSF1O43719 755 aaKnown RBP15.73■□□□□ 0.11
LDLR-207ENST00000558013 THEMISQ8N1K5 641 aaPredicted RBP15.73■□□□□ 0.11
LDLR-207ENST00000558013 TRIM44Q96DX7 344 aaPredicted RBP15.73■□□□□ 0.11
LDLR-207ENST00000558013 PI4KAP2A4QPH2 592 aa15.73■□□□□ 0.11
LDLR-207ENST00000558013 PI4KAP1Q8N8J0 262 aa15.73■□□□□ 0.11
LDLR-207ENST00000558013 CWC22Q9HCG8 908 aaKnown RBP15.73■□□□□ 0.11
LDLR-207ENST00000558013 ISY1Q9ULR0 285 aaKnown RBP15.73■□□□□ 0.11
LDLR-207ENST00000558013 PRIM1P49642 420 aaKnown RBP15.72■□□□□ 0.11
LDLR-207ENST00000558013 MPRIPQ6WCQ1 1025 aa15.72■□□□□ 0.11
LDLR-207ENST00000558013 SOS1Q07889 1333 aaPredicted RBP15.72■□□□□ 0.11
LDLR-207ENST00000558013 SRGAP3O43295 1099 aa15.72■□□□□ 0.11
LDLR-207ENST00000558013 TPRNQ4KMQ1 711 aa15.72■□□□□ 0.11
LDLR-207ENST00000558013 RBSNQ9H1K0 784 aa15.72■□□□□ 0.11
LDLR-207ENST00000558013 GDPD2Q9HCC8 539 aa15.71■□□□□ 0.11
LDLR-207ENST00000558013 TMEM63CQ9P1W3 806 aa15.71■□□□□ 0.11
LDLR-207ENST00000558013 PRAMEF22A3QJZ6 481 aa15.71■□□□□ 0.11
LDLR-207ENST00000558013 PTMSP20962 102 aa15.71■□□□□ 0.11
LDLR-207ENST00000558013 SSH3Q8TE77 659 aa15.71■□□□□ 0.11
LDLR-207ENST00000558013 STAP2Q9UGK3 403 aa15.71■□□□□ 0.11
LDLR-207ENST00000558013 EIF4A1P60842 406 aaKnown RBP15.7■□□□□ 0.1
LDLR-207ENST00000558013 SRCIN1Q9C0H9 1055 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms