RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 TAF1LQ8IZX4 1826 aa19.63■□□□□ 0.73
VIPAS39-210ENST00000557466 PALLDQ8WX93 1383 aa19.63■□□□□ 0.73
VIPAS39-210ENST00000557466 TMPOP42166 694 aaKnown RBP19.63■□□□□ 0.73
VIPAS39-210ENST00000557466 SLC52A2Q9HAB3 445 aa19.63■□□□□ 0.73
VIPAS39-210ENST00000557466 C5P01031 1676 aa19.62■□□□□ 0.73
VIPAS39-210ENST00000557466 DCTN1Q14203 1278 aa19.62■□□□□ 0.73
VIPAS39-210ENST00000557466 MCM10Q7L590 875 aa19.62■□□□□ 0.73
VIPAS39-210ENST00000557466 NFATC2IPQ8NCF5 419 aa19.62■□□□□ 0.73
VIPAS39-210ENST00000557466 RRP7AQ9Y3A4 280 aaKnown RBP19.62■□□□□ 0.73
VIPAS39-210ENST00000557466 HTATSF1O43719 755 aaKnown RBP19.61■□□□□ 0.73
VIPAS39-210ENST00000557466 TXNRD1Q16881 649 aa19.61■□□□□ 0.73
VIPAS39-210ENST00000557466 RTF1Q92541 710 aaKnown RBP19.61■□□□□ 0.73
VIPAS39-210ENST00000557466 ASAP1Q9ULH1 1129 aa19.61■□□□□ 0.73
VIPAS39-210ENST00000557466 ZNF831Q5JPB2 1677 aa19.61■□□□□ 0.73
VIPAS39-210ENST00000557466 FAM9BQ8IZU0 186 aa19.6■□□□□ 0.73
VIPAS39-210ENST00000557466 PROM2Q8N271 834 aa19.6■□□□□ 0.73
VIPAS39-210ENST00000557466 ATG3Q9NT62 314 aa19.6■□□□□ 0.73
VIPAS39-210ENST00000557466 KDM3BQ7LBC6 1761 aa19.6■□□□□ 0.73
VIPAS39-210ENST00000557466 CICQ96RK0 1608 aaPredicted RBP19.59■□□□□ 0.73
VIPAS39-210ENST00000557466 RIPK4P57078 832 aa19.59■□□□□ 0.73
VIPAS39-210ENST00000557466 TEFQ10587 303 aa19.59■□□□□ 0.73
VIPAS39-210ENST00000557466 SMARCC1Q92922 1105 aaPredicted RBP19.59■□□□□ 0.73
VIPAS39-210ENST00000557466 KCPQ6ZWJ8 1503 aa19.59■□□□□ 0.73
VIPAS39-210ENST00000557466 TJP1Q07157 1748 aa19.59■□□□□ 0.73
VIPAS39-210ENST00000557466 APAF1O14727 1248 aa19.58■□□□□ 0.72
VIPAS39-210ENST00000557466 NEUROD2Q15784 382 aa19.58■□□□□ 0.72
VIPAS39-210ENST00000557466 THUMPD2Q9BTF0 503 aaKnown RBP19.58■□□□□ 0.72
VIPAS39-210ENST00000557466 COL5A3P25940 1745 aaPredicted RBP19.58■□□□□ 0.72
VIPAS39-210ENST00000557466 TUBGCP6Q96RT7 1819 aa19.57■□□□□ 0.72
VIPAS39-210ENST00000557466 KCNQ4P56696 695 aa19.56■□□□□ 0.72
VIPAS39-210ENST00000557466 LRRC4BQ9NT99 713 aa19.56■□□□□ 0.72
VIPAS39-210ENST00000557466 LMOD3Q0VAK6 560 aa19.55■□□□□ 0.72
VIPAS39-210ENST00000557466 SLC39A6Q13433 755 aa19.55■□□□□ 0.72
VIPAS39-210ENST00000557466 SLC27A3Q5K4L6 730 aa19.55■□□□□ 0.72
VIPAS39-210ENST00000557466 CCNL1Q9UK58 526 aaPredicted RBP19.55■□□□□ 0.72
VIPAS39-210ENST00000557466 TRIM35Q9UPQ4 493 aa19.55■□□□□ 0.72
VIPAS39-210ENST00000557466 C4BP0C0L5 1744 aa19.54■□□□□ 0.72
VIPAS39-210ENST00000557466 SENP3-EIF4A1A0A087X0R7 540 aa19.54■□□□□ 0.72
VIPAS39-210ENST00000557466 LOC102724428A0A0B4J2F2 783 aa19.53■□□□□ 0.72
VIPAS39-210ENST00000557466 SIK1P57059 783 aa19.53■□□□□ 0.72
VIPAS39-210ENST00000557466 ANO8Q9HCE9 1232 aaPredicted RBP19.53■□□□□ 0.72
VIPAS39-210ENST00000557466 QSER1Q2KHR3 1735 aa19.53■□□□□ 0.72
VIPAS39-210ENST00000557466 SLC4A9Q96Q91 983 aa19.52■□□□□ 0.72
VIPAS39-210ENST00000557466 BTBD11A6QL63 1104 aa19.51■□□□□ 0.71
VIPAS39-210ENST00000557466 PTCD1O75127 700 aaKnown RBP19.51■□□□□ 0.71
VIPAS39-210ENST00000557466 RBM42Q9BTD8 480 aaKnown RBP19.51■□□□□ 0.71
VIPAS39-210ENST00000557466 ITPK1Q13572 414 aa19.5■□□□□ 0.71
VIPAS39-210ENST00000557466 ZNF790Q6PG37 636 aa19.5■□□□□ 0.71
VIPAS39-210ENST00000557466 UBR3Q6ZT12 1888 aa19.5■□□□□ 0.71
VIPAS39-210ENST00000557466 LAMB4A4D0S4 1761 aa19.49■□□□□ 0.71
VIPAS39-210ENST00000557466 KCNQ3O43525 872 aa19.49■□□□□ 0.71
VIPAS39-210ENST00000557466 ATP6V1AP38606 617 aa19.49■□□□□ 0.71
VIPAS39-210ENST00000557466 TAF7Q15545 349 aaPredicted RBP19.49■□□□□ 0.71
VIPAS39-210ENST00000557466 TTC5Q8N0Z6 440 aa19.49■□□□□ 0.71
VIPAS39-210ENST00000557466 ZNF827Q17R98 1081 aa19.48■□□□□ 0.71
VIPAS39-210ENST00000557466 MIS18AQ9NYP9 233 aa19.48■□□□□ 0.71
VIPAS39-210ENST00000557466 MYH14Q7Z406 1995 aaKnown RBP19.48■□□□□ 0.71
VIPAS39-210ENST00000557466 CASZ1Q86V15 1759 aa19.47■□□□□ 0.71
VIPAS39-210ENST00000557466 NBPF14Q5TI25 921 aa19.47■□□□□ 0.71
VIPAS39-210ENST00000557466 LINC00116Q8NCU8 138 aa19.47■□□□□ 0.71
VIPAS39-210ENST00000557466 ZNF496Q96IT1 587 aaPredicted RBP19.47■□□□□ 0.71
VIPAS39-210ENST00000557466 HEG1Q9ULI3 1381 aa19.46■□□□□ 0.71
VIPAS39-210ENST00000557466 AKT1S1Q96B36 256 aa19.46■□□□□ 0.71
VIPAS39-210ENST00000557466 STK32BQ9NY57 414 aa19.46■□□□□ 0.71
VIPAS39-210ENST00000557466 CCDC27Q2M243 656 aa19.45■□□□□ 0.7
VIPAS39-210ENST00000557466 PSDA5PKW4 1024 aaPredicted RBP19.44■□□□□ 0.7
VIPAS39-210ENST00000557466 R3HDM1Q15032 1099 aaKnown RBP19.44■□□□□ 0.7
VIPAS39-210ENST00000557466 SLC15A2Q16348 729 aa19.44■□□□□ 0.7
VIPAS39-210ENST00000557466 NCBP3Q53F19 620 aaKnown RBP19.44■□□□□ 0.7
VIPAS39-210ENST00000557466 SALL2Q9Y467 1007 aaPredicted RBP19.44■□□□□ 0.7
VIPAS39-210ENST00000557466 WWC1Q8IX03 1113 aa19.43■□□□□ 0.7
VIPAS39-210ENST00000557466 DNAJC10Q8IXB1 793 aa19.43■□□□□ 0.7
VIPAS39-210ENST00000557466 FMNL2Q96PY5 1086 aa19.43■□□□□ 0.7
VIPAS39-210ENST00000557466 TSPYL4Q9UJ04 414 aa19.43■□□□□ 0.7
VIPAS39-210ENST00000557466 VSIG10Q8N0Z9 540 aa19.42■□□□□ 0.7
VIPAS39-210ENST00000557466 C4AP0C0L4 1744 aa19.42■□□□□ 0.7
VIPAS39-210ENST00000557466 BABAM1Q9NWV8 329 aa19.41■□□□□ 0.7
VIPAS39-210ENST00000557466 LAS1LQ9Y4W2 734 aaKnown RBP19.41■□□□□ 0.7
VIPAS39-210ENST00000557466 CNTNAP4Q9C0A0 1308 aa19.41■□□□□ 0.7
VIPAS39-210ENST00000557466 CHL1O00533 1208 aa19.4■□□□□ 0.7
VIPAS39-210ENST00000557466 EIF4A1P60842 406 aaKnown RBP19.4■□□□□ 0.7
VIPAS39-210ENST00000557466 CALD1Q05682 793 aaKnown RBP19.4■□□□□ 0.7
VIPAS39-210ENST00000557466 AK7Q96M32 723 aa19.4■□□□□ 0.7
VIPAS39-210ENST00000557466 PRAMEF22A3QJZ6 481 aa19.39■□□□□ 0.69
VIPAS39-210ENST00000557466 ZNF853P0CG23 659 aa19.39■□□□□ 0.69
VIPAS39-210ENST00000557466 HMGB2P26583 209 aaKnown RBP19.39■□□□□ 0.69
VIPAS39-210ENST00000557466 CFAP44Q96MT7 982 aa19.39■□□□□ 0.69
VIPAS39-210ENST00000557466 IFT57Q9NWB7 429 aa19.39■□□□□ 0.69
VIPAS39-210ENST00000557466 PNPLA7Q6ZV29 1317 aa19.39■□□□□ 0.69
VIPAS39-210ENST00000557466 CYP19A1P11511 503 aaPredicted RBP19.38■□□□□ 0.69
VIPAS39-210ENST00000557466 CRKLP46109 303 aaKnown RBP19.38■□□□□ 0.69
VIPAS39-210ENST00000557466 AMIGO3Q86WK7 504 aa19.38■□□□□ 0.69
VIPAS39-210ENST00000557466 NGEFQ8N5V2 710 aa19.38■□□□□ 0.69
VIPAS39-210ENST00000557466 TFCP2L1Q9NZI6 479 aa19.38■□□□□ 0.69
VIPAS39-210ENST00000557466 GNPATO15228 680 aa19.37■□□□□ 0.69
VIPAS39-210ENST00000557466 SNRPA1P09661 255 aaKnown RBP19.37■□□□□ 0.69
VIPAS39-210ENST00000557466 GNAI1P63096 354 aa19.37■□□□□ 0.69
VIPAS39-210ENST00000557466 RC3H1Q5TC82 1133 aaKnown RBP19.37■□□□□ 0.69
VIPAS39-210ENST00000557466 MBIPQ9NS73 344 aa19.37■□□□□ 0.69
VIPAS39-210ENST00000557466 IL16Q14005 1332 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms