RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ZKSCAN5Q9Y2L8 839 aa19.82■□□□□ 0.76
SHMT2-231ENST00000557433 NEK4P51957 841 aa19.81■□□□□ 0.76
SHMT2-231ENST00000557433 MCM10Q7L590 875 aa19.81■□□□□ 0.76
SHMT2-231ENST00000557433 TXNDC2Q86VQ3 553 aa19.81■□□□□ 0.76
SHMT2-231ENST00000557433 PLEKHG3A1L390 1219 aa19.8■□□□□ 0.76
SHMT2-231ENST00000557433 HTATSF1O43719 755 aaKnown RBP19.8■□□□□ 0.76
SHMT2-231ENST00000557433 PHF14O94880 888 aa19.8■□□□□ 0.76
SHMT2-231ENST00000557433 KRT24Q2M2I5 525 aa19.8■□□□□ 0.76
SHMT2-231ENST00000557433 LRRCC1Q9C099 1032 aa19.8■□□□□ 0.76
SHMT2-231ENST00000557433 STAP2Q9UGK3 403 aa19.8■□□□□ 0.76
SHMT2-231ENST00000557433 TOPAZ1Q8N9V7 1692 aa19.8■□□□□ 0.76
SHMT2-231ENST00000557433 RTF1Q92541 710 aaKnown RBP19.8■□□□□ 0.76
SHMT2-231ENST00000557433 TUBGCP6Q96RT7 1819 aa19.8■□□□□ 0.76
SHMT2-231ENST00000557433 TMEM63CQ9P1W3 806 aa19.79■□□□□ 0.76
SHMT2-231ENST00000557433 APBB1O00213 710 aa19.78■□□□□ 0.76
SHMT2-231ENST00000557433 MX1P20591 662 aa19.78■□□□□ 0.76
SHMT2-231ENST00000557433 STK31Q9BXU1 1019 aa19.78■□□□□ 0.76
SHMT2-231ENST00000557433 PRR36Q9H6K5 1346 aa19.78■□□□□ 0.76
SHMT2-231ENST00000557433 ATP8B2P98198 1209 aa19.77■□□□□ 0.76
SHMT2-231ENST00000557433 TSPYL4Q9UJ04 414 aa19.77■□□□□ 0.76
SHMT2-231ENST00000557433 KDRP35968 1356 aa19.77■□□□□ 0.76
SHMT2-231ENST00000557433 USP6P35125 1406 aa19.77■□□□□ 0.76
SHMT2-231ENST00000557433 PXDNLA1KZ92 1463 aa19.77■□□□□ 0.76
SHMT2-231ENST00000557433 FAM184AQ8NB25 1140 aa19.76■□□□□ 0.75
SHMT2-231ENST00000557433 RBM27Q9P2N5 1060 aaKnown RBP19.76■□□□□ 0.75
SHMT2-231ENST00000557433 PEAK1Q9H792 1746 aa19.76■□□□□ 0.75
SHMT2-231ENST00000557433 TTC21AQ8NDW8 1320 aa19.76■□□□□ 0.75
SHMT2-231ENST00000557433 SYCE3A1L190 88 aa19.76■□□□□ 0.75
SHMT2-231ENST00000557433 CHMLP26374 656 aa19.76■□□□□ 0.75
SHMT2-231ENST00000557433 MTERF4Q7Z6M4 381 aaKnown RBP19.76■□□□□ 0.75
SHMT2-231ENST00000557433 TSPY26PQ9H489 355 aa19.76■□□□□ 0.75
SHMT2-231ENST00000557433 N4BP2Q86UW6 1770 aaPredicted RBP19.75■□□□□ 0.75
SHMT2-231ENST00000557433 BABAM1Q9NWV8 329 aa19.75■□□□□ 0.75
SHMT2-231ENST00000557433 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.75■□□□□ 0.75
SHMT2-231ENST00000557433 WDR33Q9C0J8 1336 aaKnown RBP19.74■□□□□ 0.75
SHMT2-231ENST00000557433 UVSSAQ2YD98 709 aa19.74■□□□□ 0.75
SHMT2-231ENST00000557433 CCDC30Q5VVM6 783 aa19.74■□□□□ 0.75
SHMT2-231ENST00000557433 SLC4A10Q6U841 1118 aa19.74■□□□□ 0.75
SHMT2-231ENST00000557433 SBNO1A3KN83 1393 aa19.73■□□□□ 0.75
SHMT2-231ENST00000557433 ACEP12821 1306 aa19.73■□□□□ 0.75
SHMT2-231ENST00000557433 NCKAP5LQ9HCH0 1330 aa19.73■□□□□ 0.75
SHMT2-231ENST00000557433 CACNA1FO60840 1977 aa19.73■□□□□ 0.75
SHMT2-231ENST00000557433 LRRC37A3O60309 1634 aa19.73■□□□□ 0.75
SHMT2-231ENST00000557433 FLT4P35916 1363 aa19.73■□□□□ 0.75
SHMT2-231ENST00000557433 PLEKHG5O94827 1062 aa19.72■□□□□ 0.75
SHMT2-231ENST00000557433 HSP90AB2PQ58FF8 381 aa19.72■□□□□ 0.75
SHMT2-231ENST00000557433 TMEM87AQ8NBN3 555 aa19.72■□□□□ 0.75
SHMT2-231ENST00000557433 FMN2Q9NZ56 1722 aa19.72■□□□□ 0.75
SHMT2-231ENST00000557433 LETM1O95202 739 aaPredicted RBP19.72■□□□□ 0.75
SHMT2-231ENST00000557433 G2E3Q7L622 706 aa19.72■□□□□ 0.75
SHMT2-231ENST00000557433 ANO2Q9NQ90 1003 aa19.72■□□□□ 0.75
SHMT2-231ENST00000557433 RAB11FIP3O75154 756 aa19.71■□□□□ 0.75
SHMT2-231ENST00000557433 EXOC6BQ9Y2D4 811 aa19.71■□□□□ 0.75
SHMT2-231ENST00000557433 XRN1Q8IZH2 1706 aaKnown RBP19.71■□□□□ 0.75
SHMT2-231ENST00000557433 FAM208AQ9UK61 1670 aaKnown RBP19.71■□□□□ 0.75
SHMT2-231ENST00000557433 MAP3K19Q56UN5 1328 aa19.71■□□□□ 0.75
SHMT2-231ENST00000557433 F6X3S4 739 aa19.7■□□□□ 0.74
SHMT2-231ENST00000557433 FLIIQ13045 1269 aa19.7■□□□□ 0.74
SHMT2-231ENST00000557433 MTHFSDQ2M296 383 aaKnown RBP19.7■□□□□ 0.74
SHMT2-231ENST00000557433 DYNC1I1O14576 645 aa19.7■□□□□ 0.74
SHMT2-231ENST00000557433 R3HCC1Q9Y3T6 440 aaKnown RBP19.7■□□□□ 0.74
SHMT2-231ENST00000557433 ROBO2Q9HCK4 1378 aa19.7■□□□□ 0.74
SHMT2-231ENST00000557433 IGSF1Q8N6C5 1336 aa19.69■□□□□ 0.74
SHMT2-231ENST00000557433 PTPRUQ92729 1446 aa19.69■□□□□ 0.74
SHMT2-231ENST00000557433 TRIM6-TRIM34B2RNG4 842 aa19.68■□□□□ 0.74
SHMT2-231ENST00000557433 HSPA4P34932 840 aa19.68■□□□□ 0.74
SHMT2-231ENST00000557433 SASS6Q6UVJ0 657 aa19.68■□□□□ 0.74
SHMT2-231ENST00000557433 VSIG10Q8N0Z9 540 aa19.68■□□□□ 0.74
SHMT2-231ENST00000557433 NSFL1CQ9UNZ2 370 aaKnown RBP19.68■□□□□ 0.74
SHMT2-231ENST00000557433 RILPL2Q969X0 211 aa19.68■□□□□ 0.74
SHMT2-231ENST00000557433 PALD1Q9ULE6 856 aa19.68■□□□□ 0.74
SHMT2-231ENST00000557433 TMEM2Q9UHN6 1383 aa19.68■□□□□ 0.74
SHMT2-231ENST00000557433 FKBP5Q13451 457 aaPredicted RBP19.67■□□□□ 0.74
SHMT2-231ENST00000557433 CHMP4AQ9BY43 222 aa19.67■□□□□ 0.74
SHMT2-231ENST00000557433 DIP2BQ9P265 1576 aa19.67■□□□□ 0.74
SHMT2-231ENST00000557433 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.67■□□□□ 0.74
SHMT2-231ENST00000557433 XPCQ01831 940 aaPredicted RBP19.66■□□□□ 0.74
SHMT2-231ENST00000557433 KIAA2012Q0VF49 1180 aa19.66■□□□□ 0.74
SHMT2-231ENST00000557433 SSH3Q8TE77 659 aa19.66■□□□□ 0.74
SHMT2-231ENST00000557433 ATP6V1DQ9Y5K8 247 aa19.66■□□□□ 0.74
SHMT2-231ENST00000557433 ADAMTS13Q76LX8 1427 aa19.66■□□□□ 0.74
SHMT2-231ENST00000557433 PNMA6EA0A0J9YXQ4 647 aa19.65■□□□□ 0.74
SHMT2-231ENST00000557433 TNRQ92752 1358 aa19.65■□□□□ 0.74
SHMT2-231ENST00000557433 UQCRHLA0A096LP55 91 aa19.64■□□□□ 0.74
SHMT2-231ENST00000557433 PTMAP06454 111 aaKnown RBP19.64■□□□□ 0.74
SHMT2-231ENST00000557433 UQCRHP07919 91 aa19.64■□□□□ 0.74
SHMT2-231ENST00000557433 CCDC183Q5T5S1 534 aa19.64■□□□□ 0.74
SHMT2-231ENST00000557433 ESF1Q9H501 851 aaKnown RBP19.64■□□□□ 0.74
SHMT2-231ENST00000557433 MIS18AQ9NYP9 233 aa19.64■□□□□ 0.74
SHMT2-231ENST00000557433 UBTFL1P0CB47 393 aaPredicted RBP19.64■□□□□ 0.73
SHMT2-231ENST00000557433 RAD50Q92878 1312 aa19.64■□□□□ 0.73
SHMT2-231ENST00000557433 PLEKHG1Q9ULL1 1385 aa19.63■□□□□ 0.73
SHMT2-231ENST00000557433 GNAT3A8MTJ3 354 aa19.63■□□□□ 0.73
SHMT2-231ENST00000557433 FOXD4L5Q5VV16 416 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-231ENST00000557433 FOXD4L4Q8WXT5 416 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-231ENST00000557433 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-231ENST00000557433 RPAP1Q9BWH6 1393 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-231ENST00000557433 FOXO3O43524 673 aa19.63■□□□□ 0.73
SHMT2-231ENST00000557433 PDIA4P13667 645 aaKnown RBP19.63■□□□□ 0.73
SHMT2-231ENST00000557433 USP48Q86UV5 1035 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms