RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 LOC102724428A0A0B4J2F2 783 aa14.2□□□□□ -0.14
LINC00239-201ENST00000556973 SIK1P57059 783 aa14.2□□□□□ -0.14
LINC00239-201ENST00000556973 AKT1S1Q96B36 256 aa14.2□□□□□ -0.14
LINC00239-201ENST00000556973 PLEKHF1Q96S99 279 aa14.2□□□□□ -0.14
LINC00239-201ENST00000556973 C5P01031 1676 aa14.2□□□□□ -0.14
LINC00239-201ENST00000556973 IL17REQ8NFR9 667 aa14.19□□□□□ -0.14
LINC00239-201ENST00000556973 ZNF831Q5JPB2 1677 aa14.19□□□□□ -0.14
LINC00239-201ENST00000556973 QSER1Q2KHR3 1735 aa14.18□□□□□ -0.14
LINC00239-201ENST00000556973 ANP32CO43423 234 aa14.18□□□□□ -0.14
LINC00239-201ENST00000556973 HTATSF1O43719 755 aaKnown RBP14.18□□□□□ -0.14
LINC00239-201ENST00000556973 RTF1Q92541 710 aaKnown RBP14.18□□□□□ -0.14
LINC00239-201ENST00000556973 ATP6V1AP38606 617 aa14.17□□□□□ -0.14
LINC00239-201ENST00000556973 TEFQ10587 303 aa14.17□□□□□ -0.14
LINC00239-201ENST00000556973 WDR43Q15061 677 aaKnown RBP eCLIP14.17□□□□□ -0.14
LINC00239-201ENST00000556973 ZNF827Q17R98 1081 aa14.17□□□□□ -0.14
LINC00239-201ENST00000556973 RBM42Q9BTD8 480 aaKnown RBP14.17□□□□□ -0.14
LINC00239-201ENST00000556973 TFCP2L1Q9NZI6 479 aa14.17□□□□□ -0.14
LINC00239-201ENST00000556973 MRC1P22897 1456 aa14.17□□□□□ -0.14
LINC00239-201ENST00000556973 DLG5Q8TDM6 1919 aa14.17□□□□□ -0.14
LINC00239-201ENST00000556973 CASZ1Q86V15 1759 aa14.17□□□□□ -0.14
LINC00239-201ENST00000556973 MAPK8IP3Q9UPT6 1336 aa14.16□□□□□ -0.14
LINC00239-201ENST00000556973 SIPA1L3O60292 1781 aaPredicted RBP14.16□□□□□ -0.14
LINC00239-201ENST00000556973 CEMIPQ8WUJ3 1361 aa14.15□□□□□ -0.14
LINC00239-201ENST00000556973 C4BP0C0L5 1744 aa14.15□□□□□ -0.14
LINC00239-201ENST00000556973 LRP5O75197 1615 aa14.15□□□□□ -0.14
LINC00239-201ENST00000556973 TUBGCP6Q96RT7 1819 aa14.14□□□□□ -0.15
LINC00239-201ENST00000556973 PTCD1O75127 700 aaKnown RBP14.14□□□□□ -0.15
LINC00239-201ENST00000556973 NFE2L2Q16236 605 aa14.14□□□□□ -0.15
LINC00239-201ENST00000556973 PDGFDQ9GZP0 370 aaPredicted RBP14.14□□□□□ -0.15
LINC00239-201ENST00000556973 SPON1Q9HCB6 807 aa14.14□□□□□ -0.15
LINC00239-201ENST00000556973 ADAMTS8Q9UP79 889 aa14.14□□□□□ -0.15
LINC00239-201ENST00000556973 ITPK1Q13572 414 aa14.13□□□□□ -0.15
LINC00239-201ENST00000556973 MCM10Q7L590 875 aa14.13□□□□□ -0.15
LINC00239-201ENST00000556973 FLAD1Q8NFF5 587 aa14.13□□□□□ -0.15
LINC00239-201ENST00000556973 AK7Q96M32 723 aa14.13□□□□□ -0.15
LINC00239-201ENST00000556973 SLC4A9Q96Q91 983 aa14.13□□□□□ -0.15
LINC00239-201ENST00000556973 PNPLA7Q6ZV29 1317 aa14.13□□□□□ -0.15
LINC00239-201ENST00000556973 SLC39A6Q13433 755 aa14.12□□□□□ -0.15
LINC00239-201ENST00000556973 TTC5Q8N0Z6 440 aa14.12□□□□□ -0.15
LINC00239-201ENST00000556973 LINC00116Q8NCU8 138 aa14.12□□□□□ -0.15
LINC00239-201ENST00000556973 SLC16A10Q8TF71 515 aa14.12□□□□□ -0.15
LINC00239-201ENST00000556973 RUNDC1Q96C34 613 aa14.12□□□□□ -0.15
LINC00239-201ENST00000556973 COL5A3P25940 1745 aaPredicted RBP14.12□□□□□ -0.15
LINC00239-201ENST00000556973 UBR2Q8IWV8 1755 aa14.11□□□□□ -0.15
LINC00239-201ENST00000556973 BTBD11A6QL63 1104 aa14.11□□□□□ -0.15
LINC00239-201ENST00000556973 DCTN1Q14203 1278 aa14.11□□□□□ -0.15
LINC00239-201ENST00000556973 RC3H1Q5TC82 1133 aaKnown RBP14.11□□□□□ -0.15
LINC00239-201ENST00000556973 ZNF790Q6PG37 636 aa14.11□□□□□ -0.15
LINC00239-201ENST00000556973 UBR3Q6ZT12 1888 aa14.11□□□□□ -0.15
LINC00239-201ENST00000556973 VSIG10Q8N0Z9 540 aa14.11□□□□□ -0.15
LINC00239-201ENST00000556973 MTFR1LQ9H019 292 aa14.11□□□□□ -0.15
LINC00239-201ENST00000556973 CICQ96RK0 1608 aaPredicted RBP14.11□□□□□ -0.15
LINC00239-201ENST00000556973 ZBTB7AO95365 584 aa14.1□□□□□ -0.15
LINC00239-201ENST00000556973 TMPOP42166 694 aaKnown RBP14.1□□□□□ -0.15
LINC00239-201ENST00000556973 RIPK4P57078 832 aa14.1□□□□□ -0.15
LINC00239-201ENST00000556973 COL23A1Q86Y22 540 aaPredicted RBP14.1□□□□□ -0.15
LINC00239-201ENST00000556973 MSH5O43196 834 aa14.09□□□□□ -0.15
LINC00239-201ENST00000556973 SSFA2P28290 1259 aa14.09□□□□□ -0.15
LINC00239-201ENST00000556973 TAF7Q15545 349 aaPredicted RBP14.09□□□□□ -0.15
LINC00239-201ENST00000556973 CCDC184Q52MB2 194 aa14.09□□□□□ -0.15
LINC00239-201ENST00000556973 CCDC146Q8IYE0 955 aa14.09□□□□□ -0.15
LINC00239-201ENST00000556973 ATF5Q9Y2D1 282 aaPredicted RBP14.09□□□□□ -0.15
LINC00239-201ENST00000556973 TJP1Q07157 1748 aa14.09□□□□□ -0.15
LINC00239-201ENST00000556973 KCPQ6ZWJ8 1503 aa14.09□□□□□ -0.15
LINC00239-201ENST00000556973 GNPATO15228 680 aa14.08□□□□□ -0.16
LINC00239-201ENST00000556973 LMOD3Q0VAK6 560 aa14.08□□□□□ -0.16
LINC00239-201ENST00000556973 CNTNAP4Q9C0A0 1308 aa14.08□□□□□ -0.16
LINC00239-201ENST00000556973 COL24A1Q17RW2 1714 aa14.07□□□□□ -0.16
LINC00239-201ENST00000556973 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.07□□□□□ -0.16
LINC00239-201ENST00000556973 RPS6KA4O75676 772 aa14.07□□□□□ -0.16
LINC00239-201ENST00000556973 DNAJC10Q8IXB1 793 aa14.07□□□□□ -0.16
LINC00239-201ENST00000556973 PNISRQ8TF01 805 aaKnown RBP14.07□□□□□ -0.16
LINC00239-201ENST00000556973 FMNL2Q96PY5 1086 aa14.07□□□□□ -0.16
LINC00239-201ENST00000556973 TEX13AQ9BXU3 409 aaPredicted RBP14.07□□□□□ -0.16
LINC00239-201ENST00000556973 MRS2Q9HD23 443 aa14.07□□□□□ -0.16
LINC00239-201ENST00000556973 RTCBQ9Y3I0 505 aaKnown RBP14.07□□□□□ -0.16
LINC00239-201ENST00000556973 MYH14Q7Z406 1995 aaKnown RBP14.06□□□□□ -0.16
LINC00239-201ENST00000556973 PHF14O94880 888 aa14.06□□□□□ -0.16
LINC00239-201ENST00000556973 CYP19A1P11511 503 aaPredicted RBP14.06□□□□□ -0.16
LINC00239-201ENST00000556973 PTGER2P43116 358 aa14.06□□□□□ -0.16
LINC00239-201ENST00000556973 CRKLP46109 303 aaKnown RBP14.06□□□□□ -0.16
LINC00239-201ENST00000556973 TRAPPC3LQ5T215 181 aa14.06□□□□□ -0.16
LINC00239-201ENST00000556973 ZNF496Q96IT1 587 aaPredicted RBP14.06□□□□□ -0.16
LINC00239-201ENST00000556973 HEG1Q9ULI3 1381 aa14.06□□□□□ -0.16
LINC00239-201ENST00000556973 KCNQ3O43525 872 aa14.05□□□□□ -0.16
LINC00239-201ENST00000556973 STARD3NLO95772 234 aa14.05□□□□□ -0.16
LINC00239-201ENST00000556973 ADRA2BP18089 450 aa14.05□□□□□ -0.16
LINC00239-201ENST00000556973 NEUROD2Q15784 382 aa14.05□□□□□ -0.16
LINC00239-201ENST00000556973 INTS5Q6P9B9 1019 aaKnown RBP14.05□□□□□ -0.16
LINC00239-201ENST00000556973 AMIGO3Q86WK7 504 aa14.05□□□□□ -0.16
LINC00239-201ENST00000556973 SGIP1Q9BQI5 828 aa14.05□□□□□ -0.16
LINC00239-201ENST00000556973 PPP1R1BQ9UD71 204 aaPredicted RBP14.05□□□□□ -0.16
LINC00239-201ENST00000556973 SMIM5Q71RC9 77 aa14.04□□□□□ -0.16
LINC00239-201ENST00000556973 CCDC87Q9NVE4 849 aa14.04□□□□□ -0.16
LINC00239-201ENST00000556973 RRP7AQ9Y3A4 280 aaKnown RBP14.04□□□□□ -0.16
LINC00239-201ENST00000556973 KDM3BQ7LBC6 1761 aa14.04□□□□□ -0.16
LINC00239-201ENST00000556973 APAF1O14727 1248 aa14.03□□□□□ -0.16
LINC00239-201ENST00000556973 POLD1P28340 1107 aa14.03□□□□□ -0.16
LINC00239-201ENST00000556973 ARHGEF1Q92888 912 aaKnown RBP14.03□□□□□ -0.16
LINC00239-201ENST00000556973 THUMPD2Q9BTF0 503 aaKnown RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms