RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 CRB1P82279 1406 aa6.34□□□□□ -1.4
TMEM260-210ENST00000556422 ADGRL3Q9HAR2 1447 aa6.34□□□□□ -1.4
TMEM260-210ENST00000556422 RBM33Q96EV2 1170 aaKnown RBP6.33□□□□□ -1.4
TMEM260-210ENST00000556422 ZBTB40Q9NUA8 1239 aa6.33□□□□□ -1.4
TMEM260-210ENST00000556422 IGSF1Q8N6C5 1336 aa6.33□□□□□ -1.4
TMEM260-210ENST00000556422 MRPL50Q8N5N7 158 aaKnown RBP6.33□□□□□ -1.4
TMEM260-210ENST00000556422 FOXD4L1Q9NU39 408 aa6.33□□□□□ -1.4
TMEM260-210ENST00000556422 USP19O94966 1318 aa6.33□□□□□ -1.4
TMEM260-210ENST00000556422 TRPM3Q9HCF6 1732 aaPredicted RBP6.33□□□□□ -1.4
TMEM260-210ENST00000556422 ANKLE2Q86XL3 938 aa6.33□□□□□ -1.4
TMEM260-210ENST00000556422 DDX19BQ9UMR2 479 aa6.33□□□□□ -1.4
TMEM260-210ENST00000556422 RGS12O14924 1447 aa6.33□□□□□ -1.4
TMEM260-210ENST00000556422 STRCP1A6NGW2 1772 aa6.32□□□□□ -1.4
TMEM260-210ENST00000556422 LMOD3Q0VAK6 560 aa6.32□□□□□ -1.4
TMEM260-210ENST00000556422 ITPRIPQ8IWB1 547 aa6.32□□□□□ -1.4
TMEM260-210ENST00000556422 PDZRN3Q9UPQ7 1066 aa6.32□□□□□ -1.4
TMEM260-210ENST00000556422 FAM208AQ9UK61 1670 aaKnown RBP6.32□□□□□ -1.4
TMEM260-210ENST00000556422 ELL2O00472 640 aaPredicted RBP6.32□□□□□ -1.4
TMEM260-210ENST00000556422 MAFGO15525 162 aa6.32□□□□□ -1.4
TMEM260-210ENST00000556422 HDAC1Q13547 482 aaPredicted RBP6.32□□□□□ -1.4
TMEM260-210ENST00000556422 TWISTNBQ3B726 338 aaPredicted RBP6.32□□□□□ -1.4
TMEM260-210ENST00000556422 HSP90AB4PQ58FF6 505 aa6.32□□□□□ -1.4
TMEM260-210ENST00000556422 MCM10Q7L590 875 aa6.32□□□□□ -1.4
TMEM260-210ENST00000556422 ABCC4O15439 1325 aa6.32□□□□□ -1.4
TMEM260-210ENST00000556422 NPHP4O75161 1426 aaPredicted RBP6.32□□□□□ -1.4
TMEM260-210ENST00000556422 FOXO3O43524 673 aa6.32□□□□□ -1.4
TMEM260-210ENST00000556422 KRT24Q2M2I5 525 aa6.32□□□□□ -1.4
TMEM260-210ENST00000556422 EYA1Q99502 592 aa6.32□□□□□ -1.4
TMEM260-210ENST00000556422 KIF24Q5T7B8 1368 aa6.32□□□□□ -1.4
TMEM260-210ENST00000556422 CHL1O00533 1208 aa6.31□□□□□ -1.4
TMEM260-210ENST00000556422 SEC24BO95487 1268 aa6.31□□□□□ -1.4
TMEM260-210ENST00000556422 NUTM2GQ5VZR2 741 aa6.31□□□□□ -1.4
TMEM260-210ENST00000556422 NLRP6P59044 892 aa6.31□□□□□ -1.4
TMEM260-210ENST00000556422 MTHFSDQ2M296 383 aaKnown RBP6.31□□□□□ -1.4
TMEM260-210ENST00000556422 ARHGAP45Q92619 1136 aa6.31□□□□□ -1.4
TMEM260-210ENST00000556422 CACNA1FO60840 1977 aa6.31□□□□□ -1.4
TMEM260-210ENST00000556422 ZBTB7BO15156 539 aaPredicted RBP6.31□□□□□ -1.4
TMEM260-210ENST00000556422 ARID4AP29374 1257 aaPredicted RBP6.31□□□□□ -1.4
TMEM260-210ENST00000556422 HOXC9P31274 260 aa6.31□□□□□ -1.4
TMEM260-210ENST00000556422 RWDD1Q9H446 243 aaPredicted RBP6.31□□□□□ -1.4
TMEM260-210ENST00000556422 N4BP2Q86UW6 1770 aaPredicted RBP6.31□□□□□ -1.4
TMEM260-210ENST00000556422 IPO8O15397 1037 aaKnown RBP6.3□□□□□ -1.4
TMEM260-210ENST00000556422 SMC5Q8IY18 1101 aa6.3□□□□□ -1.4
TMEM260-210ENST00000556422 TMTC2Q8N394 836 aa6.3□□□□□ -1.4
TMEM260-210ENST00000556422 ZBTB47Q9UFB7 747 aaPredicted RBP6.3□□□□□ -1.4
TMEM260-210ENST00000556422 ZBTB12Q9Y330 459 aaPredicted RBP6.3□□□□□ -1.4
TMEM260-210ENST00000556422 RGPD5Q99666 1765 aa6.3□□□□□ -1.4
TMEM260-210ENST00000556422 PHF8Q9UPP1 1060 aa6.3□□□□□ -1.4
TMEM260-210ENST00000556422 KIAA0232Q92628 1395 aa6.3□□□□□ -1.4
TMEM260-210ENST00000556422 ARMCX6Q7L4S7 300 aa6.3□□□□□ -1.4
TMEM260-210ENST00000556422 ABTB2Q8N961 1025 aa6.3□□□□□ -1.4
TMEM260-210ENST00000556422 PDCL3Q9H2J4 239 aa6.3□□□□□ -1.4
TMEM260-210ENST00000556422 NOL8Q76FK4 1167 aaKnown RBP6.29□□□□□ -1.4
TMEM260-210ENST00000556422 RTL1A6NKG5 1358 aa6.29□□□□□ -1.4
TMEM260-210ENST00000556422 SLIT3O75094 1523 aa6.29□□□□□ -1.4
TMEM260-210ENST00000556422 MED1Q15648 1581 aaPredicted RBP6.29□□□□□ -1.4
TMEM260-210ENST00000556422 ALS2Q96Q42 1657 aa6.29□□□□□ -1.4
TMEM260-210ENST00000556422 CAMTA1Q9Y6Y1 1673 aa6.29□□□□□ -1.4
TMEM260-210ENST00000556422 MSH6P52701 1360 aa6.29□□□□□ -1.4
TMEM260-210ENST00000556422 AMPHP49418 695 aa6.29□□□□□ -1.4
TMEM260-210ENST00000556422 TMEM51Q9NW97 253 aa6.29□□□□□ -1.4
TMEM260-210ENST00000556422 CRYBG1Q9Y4K1 1723 aa6.29□□□□□ -1.4
TMEM260-210ENST00000556422 LMO7Q8WWI1 1683 aa6.29□□□□□ -1.4
TMEM260-210ENST00000556422 SIRT2Q8IXJ6 389 aa6.29□□□□□ -1.4
TMEM260-210ENST00000556422 KDM3BQ7LBC6 1761 aa6.29□□□□□ -1.4
TMEM260-210ENST00000556422 KIF1AQ12756 1690 aa6.28□□□□□ -1.4
TMEM260-210ENST00000556422 ATP10DQ9P241 1426 aa6.28□□□□□ -1.4
TMEM260-210ENST00000556422 TRIM44Q96DX7 344 aaPredicted RBP6.28□□□□□ -1.4
TMEM260-210ENST00000556422 C1orf115Q9H7X2 142 aa6.28□□□□□ -1.4
TMEM260-210ENST00000556422 MIS18AQ9NYP9 233 aa6.28□□□□□ -1.4
TMEM260-210ENST00000556422 ORAI2Q96SN7 254 aa6.28□□□□□ -1.4
TMEM260-210ENST00000556422 XIRP1Q702N8 1843 aaKnown RBP6.28□□□□□ -1.4
TMEM260-210ENST00000556422 TAF3Q5VWG9 929 aa6.27□□□□□ -1.4
TMEM260-210ENST00000556422 CASC1Q6TDU7 716 aa6.27□□□□□ -1.4
TMEM260-210ENST00000556422 NCAPD2Q15021 1401 aa6.27□□□□□ -1.41
TMEM260-210ENST00000556422 POLD1P28340 1107 aa6.27□□□□□ -1.41
TMEM260-210ENST00000556422 ESCO1Q5FWF5 840 aa6.27□□□□□ -1.41
TMEM260-210ENST00000556422 SIPA1L3O60292 1781 aaPredicted RBP6.27□□□□□ -1.41
TMEM260-210ENST00000556422 NUCB1Q02818 461 aa6.27□□□□□ -1.41
TMEM260-210ENST00000556422 SLC4A3P48751 1232 aa6.26□□□□□ -1.41
TMEM260-210ENST00000556422 INTS3Q68E01 1043 aaKnown RBP6.26□□□□□ -1.41
TMEM260-210ENST00000556422 MST1RQ04912 1400 aa6.26□□□□□ -1.41
TMEM260-210ENST00000556422 HOXD11P31277 338 aaPredicted RBP6.26□□□□□ -1.41
TMEM260-210ENST00000556422 HSPA2P54652 639 aa6.26□□□□□ -1.41
TMEM260-210ENST00000556422 USHBP1Q8N6Y0 703 aa6.26□□□□□ -1.41
TMEM260-210ENST00000556422 IL17REQ8NFR9 667 aa6.26□□□□□ -1.41
TMEM260-210ENST00000556422 GAS2L2Q8NHY3 880 aa6.26□□□□□ -1.41
TMEM260-210ENST00000556422 MAP3K5Q99683 1374 aa6.26□□□□□ -1.41
TMEM260-210ENST00000556422 C1orf167Q5SNV9 1468 aa6.26□□□□□ -1.41
TMEM260-210ENST00000556422 NBPF6Q5VWK0 638 aa6.26□□□□□ -1.41
TMEM260-210ENST00000556422 IP6K1Q92551 441 aa6.26□□□□□ -1.41
TMEM260-210ENST00000556422 DDRGK1Q96HY6 314 aa6.26□□□□□ -1.41
TMEM260-210ENST00000556422 NBPF4Q96M43 638 aa6.26□□□□□ -1.41
TMEM260-210ENST00000556422 API5Q9BZZ5 524 aaKnown RBP6.26□□□□□ -1.41
TMEM260-210ENST00000556422 CEMIPQ8WUJ3 1361 aa6.26□□□□□ -1.41
TMEM260-210ENST00000556422 TUBGCP6Q96RT7 1819 aa6.26□□□□□ -1.41
TMEM260-210ENST00000556422 ADAMTS7Q9UKP4 1686 aa6.26□□□□□ -1.41
TMEM260-210ENST00000556422 APBB1O00213 710 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 SEMA3FQ13275 785 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 PPP4R3BQ5MIZ7 849 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms