RNA–Protein interactions for RNA: ENST00000556343.1

ACTN1-218, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 274 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-218ENST00000556343 MARCH10Q8NA82 808 aaPredicted RBP11.86□□□□□ -0.51
ACTN1-218ENST00000556343 MIS18AQ9NYP9 233 aa11.86□□□□□ -0.51
ACTN1-218ENST00000556343 HOXB7P09629 217 aa11.85□□□□□ -0.51
ACTN1-218ENST00000556343 TWISTNBQ3B726 338 aaPredicted RBP11.85□□□□□ -0.51
ACTN1-218ENST00000556343 ZNF790Q6PG37 636 aa11.85□□□□□ -0.51
ACTN1-218ENST00000556343 SYTL4Q96C24 671 aaPredicted RBP11.85□□□□□ -0.51
ACTN1-218ENST00000556343 PKD1L3Q7Z443 1732 aa11.85□□□□□ -0.51
ACTN1-218ENST00000556343 NEFLP07196 543 aa11.84□□□□□ -0.51
ACTN1-218ENST00000556343 EIF4A1P60842 406 aaKnown RBP11.84□□□□□ -0.51
ACTN1-218ENST00000556343 ALDH1L2Q3SY69 923 aa11.84□□□□□ -0.51
ACTN1-218ENST00000556343 KRT27Q7Z3Y8 459 aa11.84□□□□□ -0.51
ACTN1-218ENST00000556343 ILDR1Q86SU0 546 aaPredicted RBP11.84□□□□□ -0.51
ACTN1-218ENST00000556343 FMNL2Q96PY5 1086 aa11.84□□□□□ -0.51
ACTN1-218ENST00000556343 KDM6AO15550 1401 aaPredicted RBP11.84□□□□□ -0.51
ACTN1-218ENST00000556343 VAMP4O75379 141 aa11.83□□□□□ -0.52
ACTN1-218ENST00000556343 HMGB2P26583 209 aaKnown RBP11.83□□□□□ -0.52
ACTN1-218ENST00000556343 PRIM1P49642 420 aaKnown RBP11.83□□□□□ -0.52
ACTN1-218ENST00000556343 FAM196AQ6ZSG2 479 aa11.83□□□□□ -0.52
ACTN1-218ENST00000556343 SMARCC1Q92922 1105 aaPredicted RBP11.83□□□□□ -0.52
ACTN1-218ENST00000556343 DLG5Q8TDM6 1919 aa11.83□□□□□ -0.52
ACTN1-218ENST00000556343 ELL2O00472 640 aaPredicted RBP11.82□□□□□ -0.52
ACTN1-218ENST00000556343 IPO8O15397 1037 aaKnown RBP11.82□□□□□ -0.52
ACTN1-218ENST00000556343 SNRPA1P09661 255 aaKnown RBP11.82□□□□□ -0.52
ACTN1-218ENST00000556343 MS4A1P11836 297 aa11.82□□□□□ -0.52
ACTN1-218ENST00000556343 CANXP27824 592 aaKnown RBP11.82□□□□□ -0.52
ACTN1-218ENST00000556343 CCDC30Q5VVM6 783 aa11.82□□□□□ -0.52
ACTN1-218ENST00000556343 C8orf58Q8NAV2 365 aa11.82□□□□□ -0.52
ACTN1-218ENST00000556343 PIGBQ92521 554 aa11.82□□□□□ -0.52
ACTN1-218ENST00000556343 STK31Q9BXU1 1019 aa11.82□□□□□ -0.52
ACTN1-218ENST00000556343 TEX13AQ9BXU3 409 aaPredicted RBP11.82□□□□□ -0.52
ACTN1-218ENST00000556343 SUPT16HQ9Y5B9 1047 aaKnown RBP11.82□□□□□ -0.52
ACTN1-218ENST00000556343 RARSP54136 660 aaKnown RBP11.81□□□□□ -0.52
ACTN1-218ENST00000556343 SLC39A6Q13433 755 aa11.81□□□□□ -0.52
ACTN1-218ENST00000556343 ACSBG1Q96GR2 724 aa11.81□□□□□ -0.52
ACTN1-218ENST00000556343 SMC4Q9NTJ3 1288 aa11.81□□□□□ -0.52
ACTN1-218ENST00000556343 GLI3P10071 1580 aa11.8□□□□□ -0.52
ACTN1-218ENST00000556343 BCL9O00512 1426 aa11.8□□□□□ -0.52
ACTN1-218ENST00000556343 HDGFL1Q5TGJ6 251 aa11.8□□□□□ -0.52
ACTN1-218ENST00000556343 VSIG10Q8N0Z9 540 aa11.8□□□□□ -0.52
ACTN1-218ENST00000556343 TSPYL6Q8N831 410 aa11.8□□□□□ -0.52
ACTN1-218ENST00000556343 MRC1P22897 1456 aa11.79□□□□□ -0.52
ACTN1-218ENST00000556343 KCNQ3O43525 872 aa11.79□□□□□ -0.52
ACTN1-218ENST00000556343 GIGYF1O75420 1035 aaPredicted RBP11.79□□□□□ -0.52
ACTN1-218ENST00000556343 ATG3Q9NT62 314 aa11.79□□□□□ -0.52
ACTN1-218ENST00000556343 RGS17Q9UGC6 210 aaPredicted RBP11.79□□□□□ -0.52
ACTN1-218ENST00000556343 KIF16BQ96L93 1317 aa11.79□□□□□ -0.52
ACTN1-218ENST00000556343 EIF2S2P20042 333 aaKnown RBP11.78□□□□□ -0.52
ACTN1-218ENST00000556343 BRPF1P55201 1214 aaPredicted RBP11.78□□□□□ -0.52
ACTN1-218ENST00000556343 RRP1P56182 461 aaKnown RBP11.78□□□□□ -0.52
ACTN1-218ENST00000556343 POTEAQ6S8J7 498 aa11.78□□□□□ -0.52
ACTN1-218ENST00000556343 SSH1Q8WYL5 1049 aa11.78□□□□□ -0.52
ACTN1-218ENST00000556343 RBM42Q9BTD8 480 aaKnown RBP11.78□□□□□ -0.52
ACTN1-218ENST00000556343 BCL11BQ9C0K0 894 aaPredicted RBP11.78□□□□□ -0.52
ACTN1-218ENST00000556343 WNK3Q9BYP7 1800 aa11.78□□□□□ -0.52
ACTN1-218ENST00000556343 LRRC37A3O60309 1634 aa11.78□□□□□ -0.52
ACTN1-218ENST00000556343 ADAMTS7Q9UKP4 1686 aa11.78□□□□□ -0.52
ACTN1-218ENST00000556343 SCN11AQ9UI33 1791 aa11.77□□□□□ -0.52
ACTN1-218ENST00000556343 PTCD1O75127 700 aaKnown RBP11.77□□□□□ -0.53
ACTN1-218ENST00000556343 STARD3NLO95772 234 aa11.77□□□□□ -0.53
ACTN1-218ENST00000556343 ZKSCAN2Q63HK3 967 aa11.77□□□□□ -0.53
ACTN1-218ENST00000556343 FRAT1Q92837 279 aaPredicted RBP11.77□□□□□ -0.53
ACTN1-218ENST00000556343 ZNF496Q96IT1 587 aaPredicted RBP11.77□□□□□ -0.53
ACTN1-218ENST00000556343 DBF4Q9UBU7 674 aaPredicted RBP11.77□□□□□ -0.53
ACTN1-218ENST00000556343 ASAP1Q9ULH1 1129 aa11.77□□□□□ -0.53
ACTN1-218ENST00000556343 THSD7AQ9UPZ6 1657 aa11.77□□□□□ -0.53
ACTN1-218ENST00000556343 BCAR3O75815 825 aa11.76□□□□□ -0.53
ACTN1-218ENST00000556343 SLC4A2P04920 1241 aa11.76□□□□□ -0.53
ACTN1-218ENST00000556343 KRT24Q2M2I5 525 aa11.76□□□□□ -0.53
ACTN1-218ENST00000556343 NPM2Q86SE8 214 aaKnown RBP11.76□□□□□ -0.53
ACTN1-218ENST00000556343 MRPL50Q8N5N7 158 aaKnown RBP11.76□□□□□ -0.53
ACTN1-218ENST00000556343 ARHGAP45Q92619 1136 aa11.76□□□□□ -0.53
ACTN1-218ENST00000556343 API5Q9BZZ5 524 aaKnown RBP11.76□□□□□ -0.53
ACTN1-218ENST00000556343 HEG1Q9ULI3 1381 aa11.76□□□□□ -0.53
ACTN1-218ENST00000556343 BCL2L13Q9BXK5 485 aa11.75□□□□□ -0.53
ACTN1-218ENST00000556343 HYPKQ9NX55 129 aa11.75□□□□□ -0.53
ACTN1-218ENST00000556343 PTPRCP08575 1304 aa11.75□□□□□ -0.53
ACTN1-218ENST00000556343 ERBB4Q15303 1308 aa11.75□□□□□ -0.53
ACTN1-218ENST00000556343 RNF123Q5XPI4 1314 aa11.75□□□□□ -0.53
ACTN1-218ENST00000556343 KCNQ2O43526 872 aa11.74□□□□□ -0.53
ACTN1-218ENST00000556343 PDE3AQ14432 1141 aa11.74□□□□□ -0.53
ACTN1-218ENST00000556343 FAM182BQ5T319 152 aa11.74□□□□□ -0.53
ACTN1-218ENST00000556343 ERICH6BQ5W0A0 696 aa11.74□□□□□ -0.53
ACTN1-218ENST00000556343 FTSJ3Q8IY81 847 aaKnown RBP11.74□□□□□ -0.53
ACTN1-218ENST00000556343 NECTIN2Q92692 538 aa11.74□□□□□ -0.53
ACTN1-218ENST00000556343 CHMP4BQ9H444 224 aaKnown RBP11.74□□□□□ -0.53
ACTN1-218ENST00000556343 NOB1Q9ULX3 412 aaKnown RBP11.74□□□□□ -0.53
ACTN1-218ENST00000556343 SHANK3Q9BYB0 1731 aa11.74□□□□□ -0.53
ACTN1-218ENST00000556343 KAT6BQ8WYB5 2073 aa11.74□□□□□ -0.53
ACTN1-218ENST00000556343 LOC102724428A0A0B4J2F2 783 aa11.73□□□□□ -0.53
ACTN1-218ENST00000556343 DDX58O95786 925 aaKnown RBP11.73□□□□□ -0.53
ACTN1-218ENST00000556343 ATP6V1AP38606 617 aa11.73□□□□□ -0.53
ACTN1-218ENST00000556343 SIK1P57059 783 aa11.73□□□□□ -0.53
ACTN1-218ENST00000556343 ATF7IPQ6VMQ6 1270 aa11.73□□□□□ -0.53
ACTN1-218ENST00000556343 DDX21Q9NR30 783 aaKnown RBP eCLIP11.73□□□□□ -0.53
ACTN1-218ENST00000556343 USP16Q9Y5T5 823 aa11.73□□□□□ -0.53
ACTN1-218ENST00000556343 PALLDQ8WX93 1383 aa11.72□□□□□ -0.53
ACTN1-218ENST00000556343 TCERG1O14776 1098 aaKnown RBP11.72□□□□□ -0.53
ACTN1-218ENST00000556343 TRIM37O94972 964 aa11.72□□□□□ -0.53
ACTN1-218ENST00000556343 PLIN1O60240 522 aa11.71□□□□□ -0.53
ACTN1-218ENST00000556343 SF3B2Q13435 895 aaKnown RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms