RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 CCDC184Q52MB2 194 aa18.88■□□□□ 0.61
SHMT2-217ENST00000555116 IL17REQ8NFR9 667 aa18.88■□□□□ 0.61
SHMT2-217ENST00000555116 SLC52A2Q9HAB3 445 aa18.88■□□□□ 0.61
SHMT2-217ENST00000555116 CCNL1Q9UK58 526 aaPredicted RBP18.88■□□□□ 0.61
SHMT2-217ENST00000555116 PNNQ9H307 717 aaKnown RBP18.87■□□□□ 0.61
SHMT2-217ENST00000555116 TUBGCP6Q96RT7 1819 aa18.87■□□□□ 0.61
SHMT2-217ENST00000555116 ZNF831Q5JPB2 1677 aa18.86■□□□□ 0.61
SHMT2-217ENST00000555116 WDR43Q15061 677 aaKnown RBP eCLIP18.86■□□□□ 0.61
SHMT2-217ENST00000555116 CEMIPQ8WUJ3 1361 aa18.85■□□□□ 0.61
SHMT2-217ENST00000555116 QSER1Q2KHR3 1735 aa18.85■□□□□ 0.61
SHMT2-217ENST00000555116 NEFMP07197 916 aa18.85■□□□□ 0.61
SHMT2-217ENST00000555116 STK32BQ9NY57 414 aa18.85■□□□□ 0.61
SHMT2-217ENST00000555116 ADAMTS8Q9UP79 889 aa18.85■□□□□ 0.61
SHMT2-217ENST00000555116 LOC102724428A0A0B4J2F2 783 aa18.84■□□□□ 0.61
SHMT2-217ENST00000555116 SIK1P57059 783 aa18.84■□□□□ 0.61
SHMT2-217ENST00000555116 SLC15A2Q16348 729 aa18.84■□□□□ 0.61
SHMT2-217ENST00000555116 ZNF827Q17R98 1081 aa18.84■□□□□ 0.61
SHMT2-217ENST00000555116 CASZ1Q86V15 1759 aa18.84■□□□□ 0.61
SHMT2-217ENST00000555116 NFE2L2Q16236 605 aa18.84■□□□□ 0.61
SHMT2-217ENST00000555116 AKT1S1Q96B36 256 aa18.84■□□□□ 0.61
SHMT2-217ENST00000555116 MAPK8IP3Q9UPT6 1336 aa18.83■□□□□ 0.61
SHMT2-217ENST00000555116 UBR2Q8IWV8 1755 aa18.83■□□□□ 0.6
SHMT2-217ENST00000555116 HTATSF1O43719 755 aaKnown RBP18.83■□□□□ 0.6
SHMT2-217ENST00000555116 C4BP0C0L5 1744 aa18.82■□□□□ 0.6
SHMT2-217ENST00000555116 SLC4A9Q96Q91 983 aa18.82■□□□□ 0.6
SHMT2-217ENST00000555116 COL5A3P25940 1745 aaPredicted RBP18.81■□□□□ 0.6
SHMT2-217ENST00000555116 ITPK1Q13572 414 aa18.81■□□□□ 0.6
SHMT2-217ENST00000555116 MCM10Q7L590 875 aa18.81■□□□□ 0.6
SHMT2-217ENST00000555116 CCDC146Q8IYE0 955 aa18.81■□□□□ 0.6
SHMT2-217ENST00000555116 RTF1Q92541 710 aaKnown RBP18.81■□□□□ 0.6
SHMT2-217ENST00000555116 CICQ96RK0 1608 aaPredicted RBP18.81■□□□□ 0.6
SHMT2-217ENST00000555116 TJP1Q07157 1748 aa18.8■□□□□ 0.6
SHMT2-217ENST00000555116 TEFQ10587 303 aa18.8■□□□□ 0.6
SHMT2-217ENST00000555116 DCTN1Q14203 1278 aa18.8■□□□□ 0.6
SHMT2-217ENST00000555116 RUNDC1Q96C34 613 aa18.8■□□□□ 0.6
SHMT2-217ENST00000555116 KCPQ6ZWJ8 1503 aa18.8■□□□□ 0.6
SHMT2-217ENST00000555116 ATP6V1AP38606 617 aa18.8■□□□□ 0.6
SHMT2-217ENST00000555116 SLC39A6Q13433 755 aa18.8■□□□□ 0.6
SHMT2-217ENST00000555116 RBM42Q9BTD8 480 aaKnown RBP18.8■□□□□ 0.6
SHMT2-217ENST00000555116 UBR3Q6ZT12 1888 aa18.79■□□□□ 0.6
SHMT2-217ENST00000555116 MRS2Q9HD23 443 aa18.79■□□□□ 0.6
SHMT2-217ENST00000555116 MYH14Q7Z406 1995 aaKnown RBP18.78■□□□□ 0.6
SHMT2-217ENST00000555116 PTCD1O75127 700 aaKnown RBP18.78■□□□□ 0.6
SHMT2-217ENST00000555116 TMPOP42166 694 aaKnown RBP18.78■□□□□ 0.6
SHMT2-217ENST00000555116 LINC00116Q8NCU8 138 aa18.78■□□□□ 0.6
SHMT2-217ENST00000555116 PNISRQ8TF01 805 aaKnown RBP18.78■□□□□ 0.6
SHMT2-217ENST00000555116 PDGFDQ9GZP0 370 aaPredicted RBP18.78■□□□□ 0.6
SHMT2-217ENST00000555116 HMGB2P26583 209 aaKnown RBP18.77■□□□□ 0.6
SHMT2-217ENST00000555116 LRP5O75197 1615 aa18.76■□□□□ 0.59
SHMT2-217ENST00000555116 RIPK4P57078 832 aa18.75■□□□□ 0.59
SHMT2-217ENST00000555116 PNPLA7Q6ZV29 1317 aa18.75■□□□□ 0.59
SHMT2-217ENST00000555116 TFCP2L1Q9NZI6 479 aa18.75■□□□□ 0.59
SHMT2-217ENST00000555116 RRP7AQ9Y3A4 280 aaKnown RBP18.75■□□□□ 0.59
SHMT2-217ENST00000555116 KDM3BQ7LBC6 1761 aa18.74■□□□□ 0.59
SHMT2-217ENST00000555116 ZNF790Q6PG37 636 aa18.74■□□□□ 0.59
SHMT2-217ENST00000555116 THUMPD2Q9BTF0 503 aaKnown RBP18.74■□□□□ 0.59
SHMT2-217ENST00000555116 BTBD11A6QL63 1104 aa18.73■□□□□ 0.59
SHMT2-217ENST00000555116 KCNQ3O43525 872 aa18.73■□□□□ 0.59
SHMT2-217ENST00000555116 TTC5Q8N0Z6 440 aa18.73■□□□□ 0.59
SHMT2-217ENST00000555116 TAF7Q15545 349 aaPredicted RBP18.72■□□□□ 0.59
SHMT2-217ENST00000555116 AMIGO3Q86WK7 504 aa18.72■□□□□ 0.59
SHMT2-217ENST00000555116 AK7Q96M32 723 aa18.72■□□□□ 0.59
SHMT2-217ENST00000555116 CNTNAP4Q9C0A0 1308 aa18.71■□□□□ 0.59
SHMT2-217ENST00000555116 NEUROD2Q15784 382 aa18.71■□□□□ 0.59
SHMT2-217ENST00000555116 VSIG10Q8N0Z9 540 aa18.71■□□□□ 0.59
SHMT2-217ENST00000555116 ZNF496Q96IT1 587 aaPredicted RBP18.71■□□□□ 0.59
SHMT2-217ENST00000555116 TRIM35Q9UPQ4 493 aa18.71■□□□□ 0.59
SHMT2-217ENST00000555116 COL24A1Q17RW2 1714 aa18.71■□□□□ 0.59
SHMT2-217ENST00000555116 LMOD3Q0VAK6 560 aa18.71■□□□□ 0.59
SHMT2-217ENST00000555116 RC3H1Q5TC82 1133 aaKnown RBP18.71■□□□□ 0.59
SHMT2-217ENST00000555116 COL23A1Q86Y22 540 aaPredicted RBP18.71■□□□□ 0.59
SHMT2-217ENST00000555116 DNAJC10Q8IXB1 793 aa18.71■□□□□ 0.59
SHMT2-217ENST00000555116 APAF1O14727 1248 aa18.7■□□□□ 0.58
SHMT2-217ENST00000555116 HEG1Q9ULI3 1381 aa18.7■□□□□ 0.58
SHMT2-217ENST00000555116 SMIM5Q71RC9 77 aa18.69■□□□□ 0.58
SHMT2-217ENST00000555116 GNPATO15228 680 aa18.69■□□□□ 0.58
SHMT2-217ENST00000555116 ZBTB7AO95365 584 aa18.69■□□□□ 0.58
SHMT2-217ENST00000555116 MIER1Q8N108 512 aa18.69■□□□□ 0.58
SHMT2-217ENST00000555116 MIS18AQ9NYP9 233 aa18.69■□□□□ 0.58
SHMT2-217ENST00000555116 CRKLP46109 303 aaKnown RBP18.68■□□□□ 0.58
SHMT2-217ENST00000555116 FMNL2Q96PY5 1086 aa18.68■□□□□ 0.58
SHMT2-217ENST00000555116 CYP19A1P11511 503 aaPredicted RBP18.67■□□□□ 0.58
SHMT2-217ENST00000555116 SSFA2P28290 1259 aa18.67■□□□□ 0.58
SHMT2-217ENST00000555116 FLAD1Q8NFF5 587 aa18.67■□□□□ 0.58
SHMT2-217ENST00000555116 SLC16A10Q8TF71 515 aa18.67■□□□□ 0.58
SHMT2-217ENST00000555116 SPON1Q9HCB6 807 aa18.67■□□□□ 0.58
SHMT2-217ENST00000555116 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.67■□□□□ 0.58
SHMT2-217ENST00000555116 INTS5Q6P9B9 1019 aaKnown RBP18.67■□□□□ 0.58
SHMT2-217ENST00000555116 MTFR1LQ9H019 292 aa18.67■□□□□ 0.58
SHMT2-217ENST00000555116 C4AP0C0L4 1744 aa18.66■□□□□ 0.58
SHMT2-217ENST00000555116 RPS6KA4O75676 772 aa18.66■□□□□ 0.58
SHMT2-217ENST00000555116 ATF5Q9Y2D1 282 aaPredicted RBP18.66■□□□□ 0.58
SHMT2-217ENST00000555116 PHF14O94880 888 aa18.65■□□□□ 0.58
SHMT2-217ENST00000555116 CCDC87Q9NVE4 849 aa18.65■□□□□ 0.58
SHMT2-217ENST00000555116 RTCBQ9Y3I0 505 aaKnown RBP18.65■□□□□ 0.58
SHMT2-217ENST00000555116 MSH5O43196 834 aa18.64■□□□□ 0.57
SHMT2-217ENST00000555116 PTGER2P43116 358 aa18.64■□□□□ 0.57
SHMT2-217ENST00000555116 LAMB4A4D0S4 1761 aa18.63■□□□□ 0.57
SHMT2-217ENST00000555116 FAM9BQ8IZU0 186 aa18.63■□□□□ 0.57
SHMT2-217ENST00000555116 SGIP1Q9BQI5 828 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms