RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 SLC52A2Q9HAB3 445 aa18.83■□□□□ 0.6
SHMT2-210ENST00000553950 FANCIQ9NVI1 1328 aa18.82■□□□□ 0.6
SHMT2-210ENST00000553950 LAMB4A4D0S4 1761 aa18.81■□□□□ 0.6
SHMT2-210ENST00000553950 CT47B1P0C2W7 299 aaPredicted RBP18.81■□□□□ 0.6
SHMT2-210ENST00000553950 ZNF853P0CG23 659 aa18.81■□□□□ 0.6
SHMT2-210ENST00000553950 CABP4P57796 275 aa18.81■□□□□ 0.6
SHMT2-210ENST00000553950 TRMT2AQ8IZ69 625 aaKnown RBP18.81■□□□□ 0.6
SHMT2-210ENST00000553950 TSPYL4Q9UJ04 414 aa18.81■□□□□ 0.6
SHMT2-210ENST00000553950 RGS12O14924 1447 aa18.81■□□□□ 0.6
SHMT2-210ENST00000553950 SOS1Q07889 1333 aaPredicted RBP18.8■□□□□ 0.6
SHMT2-210ENST00000553950 CHL1O00533 1208 aa18.8■□□□□ 0.6
SHMT2-210ENST00000553950 DUSP27Q5VZP5 1158 aa18.8■□□□□ 0.6
SHMT2-210ENST00000553950 LAS1LQ9Y4W2 734 aaKnown RBP18.8■□□□□ 0.6
SHMT2-210ENST00000553950 CACNA1FO60840 1977 aa18.8■□□□□ 0.6
SHMT2-210ENST00000553950 MARCH10Q8NA82 808 aaPredicted RBP18.79■□□□□ 0.6
SHMT2-210ENST00000553950 CDCA7LQ96GN5 454 aa18.79■□□□□ 0.6
SHMT2-210ENST00000553950 LGR6Q9HBX8 967 aa18.79■□□□□ 0.6
SHMT2-210ENST00000553950 TMOD3Q9NYL9 352 aa18.79■□□□□ 0.6
SHMT2-210ENST00000553950 BTBD11A6QL63 1104 aa18.78■□□□□ 0.6
SHMT2-210ENST00000553950 CHMP4AQ9BY43 222 aa18.78■□□□□ 0.6
SHMT2-210ENST00000553950 MBIPQ9NS73 344 aa18.78■□□□□ 0.6
SHMT2-210ENST00000553950 BTAF1O14981 1849 aa18.78■□□□□ 0.6
SHMT2-210ENST00000553950 CICQ96RK0 1608 aaPredicted RBP18.78■□□□□ 0.6
SHMT2-210ENST00000553950 ZNF831Q5JPB2 1677 aa18.76■□□□□ 0.59
SHMT2-210ENST00000553950 KRT27Q7Z3Y8 459 aa18.76■□□□□ 0.59
SHMT2-210ENST00000553950 TTC5Q8N0Z6 440 aa18.76■□□□□ 0.59
SHMT2-210ENST00000553950 ZNF428Q96B54 188 aa18.76■□□□□ 0.59
SHMT2-210ENST00000553950 RGS17Q9UGC6 210 aaPredicted RBP18.76■□□□□ 0.59
SHMT2-210ENST00000553950 TSR2Q969E8 191 aaKnown RBP18.75■□□□□ 0.59
SHMT2-210ENST00000553950 SPINK5Q9NQ38 1064 aaPredicted RBP18.75■□□□□ 0.59
SHMT2-210ENST00000553950 NFATC2IPQ8NCF5 419 aa18.74■□□□□ 0.59
SHMT2-210ENST00000553950 HOXB7P09629 217 aa18.73■□□□□ 0.59
SHMT2-210ENST00000553950 POTEAQ6S8J7 498 aa18.73■□□□□ 0.59
SHMT2-210ENST00000553950 FAM196AQ6ZSG2 479 aa18.73■□□□□ 0.59
SHMT2-210ENST00000553950 KCPQ6ZWJ8 1503 aa18.73■□□□□ 0.59
SHMT2-210ENST00000553950 C5P01031 1676 aa18.73■□□□□ 0.59
SHMT2-210ENST00000553950 ZNF790Q6PG37 636 aa18.72■□□□□ 0.59
SHMT2-210ENST00000553950 RGPD3A6NKT7 1758 aaPredicted RBP18.72■□□□□ 0.59
SHMT2-210ENST00000553950 RGPD4Q7Z3J3 1758 aa18.72■□□□□ 0.59
SHMT2-210ENST00000553950 SYTL4Q96C24 671 aaPredicted RBP18.71■□□□□ 0.59
SHMT2-210ENST00000553950 LY75O60449 1722 aa18.7■□□□□ 0.58
SHMT2-210ENST00000553950 EXOSC9Q06265 439 aaKnown RBP18.7■□□□□ 0.58
SHMT2-210ENST00000553950 SMARCC1Q92922 1105 aaPredicted RBP18.7■□□□□ 0.58
SHMT2-210ENST00000553950 FMNL2Q96PY5 1086 aa18.7■□□□□ 0.58
SHMT2-210ENST00000553950 PRIM1P49642 420 aaKnown RBP18.69■□□□□ 0.58
SHMT2-210ENST00000553950 TWISTNBQ3B726 338 aaPredicted RBP18.69■□□□□ 0.58
SHMT2-210ENST00000553950 TNS1Q9HBL0 1735 aaKnown RBP18.69■□□□□ 0.58
SHMT2-210ENST00000553950 EIF4A1P60842 406 aaKnown RBP18.68■□□□□ 0.58
SHMT2-210ENST00000553950 PIGBQ92521 554 aa18.68■□□□□ 0.58
SHMT2-210ENST00000553950 HEG1Q9ULI3 1381 aa18.68■□□□□ 0.58
SHMT2-210ENST00000553950 TJP1Q07157 1748 aa18.67■□□□□ 0.58
SHMT2-210ENST00000553950 ACSBG1Q96GR2 724 aa18.67■□□□□ 0.58
SHMT2-210ENST00000553950 MIS18AQ9NYP9 233 aa18.67■□□□□ 0.58
SHMT2-210ENST00000553950 RCAN3Q9UKA8 241 aa18.67■□□□□ 0.58
SHMT2-210ENST00000553950 VSIG10Q8N0Z9 540 aa18.66■□□□□ 0.58
SHMT2-210ENST00000553950 COL5A3P25940 1745 aaPredicted RBP18.66■□□□□ 0.58
SHMT2-210ENST00000553950 HMGB2P26583 209 aaKnown RBP18.65■□□□□ 0.58
SHMT2-210ENST00000553950 ALDH1L2Q3SY69 923 aa18.65■□□□□ 0.58
SHMT2-210ENST00000553950 PALLDQ8WX93 1383 aa18.65■□□□□ 0.58
SHMT2-210ENST00000553950 SNRPA1P09661 255 aaKnown RBP18.64■□□□□ 0.57
SHMT2-210ENST00000553950 SLC39A6Q13433 755 aa18.64■□□□□ 0.57
SHMT2-210ENST00000553950 BCL11BQ9C0K0 894 aaPredicted RBP18.64■□□□□ 0.57
SHMT2-210ENST00000553950 KIF16BQ96L93 1317 aa18.64■□□□□ 0.57
SHMT2-210ENST00000553950 CCDC30Q5VVM6 783 aa18.63■□□□□ 0.57
SHMT2-210ENST00000553950 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.63■□□□□ 0.57
SHMT2-210ENST00000553950 C8orf58Q8NAV2 365 aa18.63■□□□□ 0.57
SHMT2-210ENST00000553950 TEX13AQ9BXU3 409 aaPredicted RBP18.63■□□□□ 0.57
SHMT2-210ENST00000553950 ATG3Q9NT62 314 aa18.63■□□□□ 0.57
SHMT2-210ENST00000553950 ZNF496Q96IT1 587 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-210ENST00000553950 STK31Q9BXU1 1019 aa18.62■□□□□ 0.57
SHMT2-210ENST00000553950 ERBB4Q15303 1308 aa18.62■□□□□ 0.57
SHMT2-210ENST00000553950 RREB1Q92766 1687 aa18.62■□□□□ 0.57
SHMT2-210ENST00000553950 TAF1LQ8IZX4 1826 aa18.62■□□□□ 0.57
SHMT2-210ENST00000553950 VAMP4O75379 141 aa18.61■□□□□ 0.57
SHMT2-210ENST00000553950 GIGYF1O75420 1035 aaPredicted RBP18.61■□□□□ 0.57
SHMT2-210ENST00000553950 HDGFL1Q5TGJ6 251 aa18.61■□□□□ 0.57
SHMT2-210ENST00000553950 ASAP1Q9ULH1 1129 aa18.61■□□□□ 0.57
SHMT2-210ENST00000553950 KCNQ3O43525 872 aa18.6■□□□□ 0.57
SHMT2-210ENST00000553950 RARSP54136 660 aaKnown RBP18.6■□□□□ 0.57
SHMT2-210ENST00000553950 TSPYL6Q8N831 410 aa18.6■□□□□ 0.57
SHMT2-210ENST00000553950 SMC4Q9NTJ3 1288 aa18.6■□□□□ 0.57
SHMT2-210ENST00000553950 KCNQ2O43526 872 aa18.59■□□□□ 0.57
SHMT2-210ENST00000553950 BRPF1P55201 1214 aaPredicted RBP18.59■□□□□ 0.57
SHMT2-210ENST00000553950 FAM182BQ5T319 152 aa18.59■□□□□ 0.57
SHMT2-210ENST00000553950 N4BP2Q86UW6 1770 aaPredicted RBP18.59■□□□□ 0.57
SHMT2-210ENST00000553950 ELL2O00472 640 aaPredicted RBP18.58■□□□□ 0.56
SHMT2-210ENST00000553950 PTCD1O75127 700 aaKnown RBP18.58■□□□□ 0.56
SHMT2-210ENST00000553950 KRT24Q2M2I5 525 aa18.58■□□□□ 0.56
SHMT2-210ENST00000553950 RBM42Q9BTD8 480 aaKnown RBP18.58■□□□□ 0.56
SHMT2-210ENST00000553950 STARD3NLO95772 234 aa18.57■□□□□ 0.56
SHMT2-210ENST00000553950 LOC102724428A0A0B4J2F2 783 aa18.56■□□□□ 0.56
SHMT2-210ENST00000553950 CANXP27824 592 aaKnown RBP18.56■□□□□ 0.56
SHMT2-210ENST00000553950 SIK1P57059 783 aa18.56■□□□□ 0.56
SHMT2-210ENST00000553950 DBF4Q9UBU7 674 aaPredicted RBP18.56■□□□□ 0.56
SHMT2-210ENST00000553950 IPO8O15397 1037 aaKnown RBP18.55■□□□□ 0.56
SHMT2-210ENST00000553950 TRIM37O94972 964 aa18.55■□□□□ 0.56
SHMT2-210ENST00000553950 SSH1Q8WYL5 1049 aa18.55■□□□□ 0.56
SHMT2-210ENST00000553950 MS4A1P11836 297 aa18.54■□□□□ 0.56
SHMT2-210ENST00000553950 SLC27A3Q5K4L6 730 aa18.54■□□□□ 0.56
SHMT2-210ENST00000553950 PTPRCP08575 1304 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms