RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 BTBD11A6QL63 1104 aa16■□□□□ 0.15
SHMT2-209ENST00000553949 WDR63Q8IWG1 891 aa16■□□□□ 0.15
SHMT2-209ENST00000553949 ATG3Q9NT62 314 aa16■□□□□ 0.15
SHMT2-209ENST00000553949 ASAP1Q9ULH1 1129 aa16■□□□□ 0.15
SHMT2-209ENST00000553949 ZNF521Q96K83 1311 aa15.99■□□□□ 0.15
SHMT2-209ENST00000553949 SBF2Q86WG5 1849 aa15.99■□□□□ 0.15
SHMT2-209ENST00000553949 APBA3O96018 575 aa15.99■□□□□ 0.15
SHMT2-209ENST00000553949 CCDC125Q86Z20 511 aa15.99■□□□□ 0.15
SHMT2-209ENST00000553949 MIS18AQ9NYP9 233 aa15.99■□□□□ 0.15
SHMT2-209ENST00000553949 SLC39A6Q13433 755 aa15.98■□□□□ 0.15
SHMT2-209ENST00000553949 SF3B2Q13435 895 aaKnown RBP15.98■□□□□ 0.15
SHMT2-209ENST00000553949 UPF1Q92900 1129 aaKnown RBP eCLIP15.98■□□□□ 0.15
SHMT2-209ENST00000553949 CFAP44Q96MT7 982 aa15.98■□□□□ 0.15
SHMT2-209ENST00000553949 IFT57Q9NWB7 429 aa15.98■□□□□ 0.15
SHMT2-209ENST00000553949 BABAM1Q9NWV8 329 aa15.98■□□□□ 0.15
SHMT2-209ENST00000553949 LAS1LQ9Y4W2 734 aaKnown RBP15.98■□□□□ 0.15
SHMT2-209ENST00000553949 IL16Q14005 1332 aa15.97■□□□□ 0.15
SHMT2-209ENST00000553949 ITGB4P16144 1822 aa15.97■□□□□ 0.15
SHMT2-209ENST00000553949 CHL1O00533 1208 aa15.97■□□□□ 0.15
SHMT2-209ENST00000553949 SOCS7O14512 581 aa15.97■□□□□ 0.15
SHMT2-209ENST00000553949 ZNF853P0CG23 659 aa15.97■□□□□ 0.15
SHMT2-209ENST00000553949 ZNF790Q6PG37 636 aa15.97■□□□□ 0.15
SHMT2-209ENST00000553949 SMARCC1Q92922 1105 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-209ENST00000553949 TSPYL4Q9UJ04 414 aa15.97■□□□□ 0.15
SHMT2-209ENST00000553949 KCNQ3O43525 872 aa15.96■□□□□ 0.15
SHMT2-209ENST00000553949 GNAI1P63096 354 aa15.96■□□□□ 0.15
SHMT2-209ENST00000553949 TTC5Q8N0Z6 440 aa15.96■□□□□ 0.15
SHMT2-209ENST00000553949 PALLDQ8WX93 1383 aa15.96■□□□□ 0.15
SHMT2-209ENST00000553949 SIPA1L3O60292 1781 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-209ENST00000553949 PLSCR1O15162 318 aa15.95■□□□□ 0.14
SHMT2-209ENST00000553949 BTAF1O14981 1849 aa15.95■□□□□ 0.14
SHMT2-209ENST00000553949 VIRMAQ69YN4 1812 aaKnown RBP15.95■□□□□ 0.14
SHMT2-209ENST00000553949 ZBED9Q6R2W3 1325 aa15.94■□□□□ 0.14
SHMT2-209ENST00000553949 TNS1Q9HBL0 1735 aaKnown RBP15.94■□□□□ 0.14
SHMT2-209ENST00000553949 BAG6P46379 1132 aa15.94■□□□□ 0.14
SHMT2-209ENST00000553949 GOLGA2Q08379 1002 aa15.94■□□□□ 0.14
SHMT2-209ENST00000553949 SPINK5Q9NQ38 1064 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-209ENST00000553949 MBIPQ9NS73 344 aa15.94■□□□□ 0.14
SHMT2-209ENST00000553949 KAT6BQ8WYB5 2073 aa15.94■□□□□ 0.14
SHMT2-209ENST00000553949 PTCD1O75127 700 aaKnown RBP15.93■□□□□ 0.14
SHMT2-209ENST00000553949 ZNF496Q96IT1 587 aaPredicted RBP15.93■□□□□ 0.14
SHMT2-209ENST00000553949 YTHDC1Q96MU7 727 aaKnown RBP15.93■□□□□ 0.14
SHMT2-209ENST00000553949 LOC102724428A0A0B4J2F2 783 aa15.92■□□□□ 0.14
SHMT2-209ENST00000553949 SIK1P57059 783 aa15.92■□□□□ 0.14
SHMT2-209ENST00000553949 EIF4A1P60842 406 aaKnown RBP15.92■□□□□ 0.14
SHMT2-209ENST00000553949 EN1Q05925 392 aaPredicted RBP15.92■□□□□ 0.14
SHMT2-209ENST00000553949 DEFB132Q7Z7B7 95 aa15.92■□□□□ 0.14
SHMT2-209ENST00000553949 TSR2Q969E8 191 aaKnown RBP15.92■□□□□ 0.14
SHMT2-209ENST00000553949 FMNL2Q96PY5 1086 aa15.92■□□□□ 0.14
SHMT2-209ENST00000553949 RBM42Q9BTD8 480 aaKnown RBP15.92■□□□□ 0.14
SHMT2-209ENST00000553949 PAPPAQ13219 1627 aa15.92■□□□□ 0.14
SHMT2-209ENST00000553949 KCPQ6ZWJ8 1503 aa15.92■□□□□ 0.14
SHMT2-209ENST00000553949 E9PSI1 815 aa15.91■□□□□ 0.14
SHMT2-209ENST00000553949 TXNRD1Q16881 649 aa15.91■□□□□ 0.14
SHMT2-209ENST00000553949 PROM2Q8N271 834 aa15.91■□□□□ 0.14
SHMT2-209ENST00000553949 CDCA7LQ96GN5 454 aa15.91■□□□□ 0.14
SHMT2-209ENST00000553949 SLC4A9Q96Q91 983 aa15.91■□□□□ 0.14
SHMT2-209ENST00000553949 CAMKK2Q96RR4 588 aa15.91■□□□□ 0.14
SHMT2-209ENST00000553949 MYH16Q9H6N6 1097 aa15.91■□□□□ 0.14
SHMT2-209ENST00000553949 FANCIQ9NVI1 1328 aa15.91■□□□□ 0.14
SHMT2-209ENST00000553949 SLFN5Q08AF3 891 aa15.9■□□□□ 0.14
SHMT2-209ENST00000553949 EZH2Q15910 746 aaKnown RBP15.9■□□□□ 0.14
SHMT2-209ENST00000553949 CCNL1Q9UK58 526 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-209ENST00000553949 HEG1Q9ULI3 1381 aa15.89■□□□□ 0.13
SHMT2-209ENST00000553949 ATP6V1AP38606 617 aa15.89■□□□□ 0.13
SHMT2-209ENST00000553949 KCNQ4P56696 695 aa15.89■□□□□ 0.13
SHMT2-209ENST00000553949 SLC27A3Q5K4L6 730 aa15.89■□□□□ 0.13
SHMT2-209ENST00000553949 VSIG10Q8N0Z9 540 aa15.89■□□□□ 0.13
SHMT2-209ENST00000553949 KDM3BQ7LBC6 1761 aa15.89■□□□□ 0.13
SHMT2-209ENST00000553949 SNRPA1P09661 255 aaKnown RBP15.88■□□□□ 0.13
SHMT2-209ENST00000553949 ITPK1Q13572 414 aa15.88■□□□□ 0.13
SHMT2-209ENST00000553949 KRT24Q2M2I5 525 aa15.88■□□□□ 0.13
SHMT2-209ENST00000553949 LRRC4BQ9NT99 713 aa15.88■□□□□ 0.13
SHMT2-209ENST00000553949 UBR2Q8IWV8 1755 aa15.87■□□□□ 0.13
SHMT2-209ENST00000553949 GIGYF1O75420 1035 aaPredicted RBP15.87■□□□□ 0.13
SHMT2-209ENST00000553949 TRMT2AQ8IZ69 625 aaKnown RBP15.87■□□□□ 0.13
SHMT2-209ENST00000553949 LY75O60449 1722 aa15.86■□□□□ 0.13
SHMT2-209ENST00000553949 RGPD3A6NKT7 1758 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-209ENST00000553949 RGPD4Q7Z3J3 1758 aa15.86■□□□□ 0.13
SHMT2-209ENST00000553949 PRAMEF22A3QJZ6 481 aa15.86■□□□□ 0.13
SHMT2-209ENST00000553949 DNAJC10Q8IXB1 793 aa15.86■□□□□ 0.13
SHMT2-209ENST00000553949 C8orf58Q8NAV2 365 aa15.86■□□□□ 0.13
SHMT2-209ENST00000553949 EXOSC9Q06265 439 aaKnown RBP15.85■□□□□ 0.13
SHMT2-209ENST00000553949 DUSP27Q5VZP5 1158 aa15.85■□□□□ 0.13
SHMT2-209ENST00000553949 LINC00116Q8NCU8 138 aa15.85■□□□□ 0.13
SHMT2-209ENST00000553949 TEX13AQ9BXU3 409 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-209ENST00000553949 HMGB2P26583 209 aaKnown RBP15.84■□□□□ 0.13
SHMT2-209ENST00000553949 ELL2O00472 640 aaPredicted RBP15.83■□□□□ 0.12
SHMT2-209ENST00000553949 STARD3NLO95772 234 aa15.83■□□□□ 0.12
SHMT2-209ENST00000553949 HOXB7P09629 217 aa15.83■□□□□ 0.12
SHMT2-209ENST00000553949 CYP19A1P11511 503 aaPredicted RBP15.83■□□□□ 0.12
SHMT2-209ENST00000553949 TSPYL6Q8N831 410 aa15.83■□□□□ 0.12
SHMT2-209ENST00000553949 USP16Q9Y5T5 823 aa15.83■□□□□ 0.12
SHMT2-209ENST00000553949 ZNF831Q5JPB2 1677 aa15.83■□□□□ 0.12
SHMT2-209ENST00000553949 TWISTNBQ3B726 338 aaPredicted RBP15.82■□□□□ 0.12
SHMT2-209ENST00000553949 SOS1Q07889 1333 aaPredicted RBP15.82■□□□□ 0.12
SHMT2-209ENST00000553949 TJP1Q07157 1748 aa15.81■□□□□ 0.12
SHMT2-209ENST00000553949 CICQ96RK0 1608 aaPredicted RBP15.81■□□□□ 0.12
SHMT2-209ENST00000553949 CNTNAP4Q9C0A0 1308 aa15.81■□□□□ 0.12
SHMT2-209ENST00000553949 EIF2S2P20042 333 aaKnown RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms