RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 RTL1A6NKG5 1358 aa15.1■□□□□ 0.01
SHMT2-207ENST00000553837 ADAMTSL3P82987 1691 aa15.1■□□□□ 0.01
SHMT2-207ENST00000553837 PTPRCP08575 1304 aa15.09■□□□□ 0.01
SHMT2-207ENST00000553837 F6X3S4 739 aa15.09■□□□□ 0.01
SHMT2-207ENST00000553837 PLEKHM2Q8IWE5 1019 aa15.09■□□□□ 0.01
SHMT2-207ENST00000553837 ABTB2Q8N961 1025 aa15.09■□□□□ 0.01
SHMT2-207ENST00000553837 TNPO1Q92973 898 aaKnown RBP15.09■□□□□ 0.01
SHMT2-207ENST00000553837 KIF2CQ99661 725 aa15.09■□□□□ 0.01
SHMT2-207ENST00000553837 OTUD7AQ8TE49 926 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-207ENST00000553837 LTV1Q96GA3 475 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-207ENST00000553837 USP54Q70EL1 1684 aa15.09■□□□□ 0.01
SHMT2-207ENST00000553837 TAF7LQ5H9L4 462 aa15.08■□□□□ 0.01
SHMT2-207ENST00000553837 GAS2L2Q8NHY3 880 aa15.08■□□□□ 0.01
SHMT2-207ENST00000553837 LRRC37A3O60309 1634 aa15.08■□□□□ 0
SHMT2-207ENST00000553837 MSNP26038 577 aaKnown RBP15.08■□□□□ 0
SHMT2-207ENST00000553837 HAP1P54257 671 aaPredicted RBP15.08■□□□□ 0
SHMT2-207ENST00000553837 BCL11BQ9C0K0 894 aaPredicted RBP15.08■□□□□ 0
SHMT2-207ENST00000553837 NCLP19338 710 aaKnown RBP15.07■□□□□ 0
SHMT2-207ENST00000553837 USHBP1Q8N6Y0 703 aa15.07■□□□□ 0
SHMT2-207ENST00000553837 IL17REQ8NFR9 667 aa15.07■□□□□ 0
SHMT2-207ENST00000553837 CHD2O14647 1828 aaKnown RBP15.07■□□□□ 0
SHMT2-207ENST00000553837 RAB3GAP1Q15042 981 aa15.07■□□□□ 0
SHMT2-207ENST00000553837 SMARCA5O60264 1052 aaPredicted RBP15.06■□□□□ 0
SHMT2-207ENST00000553837 NASPP49321 788 aaPredicted RBP15.06■□□□□ 0
SHMT2-207ENST00000553837 RPAP2Q8IXW5 612 aaPredicted RBP15.06■□□□□ 0
SHMT2-207ENST00000553837 PHF8Q9UPP1 1060 aa15.06■□□□□ 0
SHMT2-207ENST00000553837 GNAT3A8MTJ3 354 aa15.05■□□□□ 0
SHMT2-207ENST00000553837 SLC4A10Q6U841 1118 aa15.05■□□□□ -0
SHMT2-207ENST00000553837 C14orf37Q86TY3 774 aa15.05■□□□□ -0
SHMT2-207ENST00000553837 NECTIN2Q92692 538 aa15.05■□□□□ -0
SHMT2-207ENST00000553837 APBB1O00213 710 aa15.04■□□□□ -0
SHMT2-207ENST00000553837 CD2BP2O95400 341 aaKnown RBP15.04■□□□□ -0
SHMT2-207ENST00000553837 HSP90AB1P08238 724 aaKnown RBP15.04■□□□□ -0
SHMT2-207ENST00000553837 HTATSF1O43719 755 aaKnown RBP15.04■□□□□ -0
SHMT2-207ENST00000553837 HS1BP3Q53T59 392 aa15.04■□□□□ -0
SHMT2-207ENST00000553837 TTC22Q5TAA0 569 aa15.04■□□□□ -0
SHMT2-207ENST00000553837 SMAP1Q8IYB5 467 aaPredicted RBP15.04■□□□□ -0
SHMT2-207ENST00000553837 LTN1O94822 1766 aa15.03■□□□□ -0
SHMT2-207ENST00000553837 GOLGA6L22H0YM25 854 aa15.03■□□□□ -0
SHMT2-207ENST00000553837 ANKLE2Q86XL3 938 aa15.03■□□□□ -0
SHMT2-207ENST00000553837 RBM42Q9BTD8 480 aaKnown RBP15.03■□□□□ -0
SHMT2-207ENST00000553837 MAP3K5Q99683 1374 aa15.03■□□□□ -0
SHMT2-207ENST00000553837 CDC45O75419 566 aa15.02■□□□□ -0
SHMT2-207ENST00000553837 IBTKQ9P2D0 1353 aaPredicted RBP15.02■□□□□ -0
SHMT2-207ENST00000553837 FAM208AQ9UK61 1670 aaKnown RBP15.02■□□□□ -0
SHMT2-207ENST00000553837 NFAT5O94916 1531 aa15.02■□□□□ -0
SHMT2-207ENST00000553837 MTERF4Q7Z6M4 381 aaKnown RBP15.02□□□□□ -0.01
SHMT2-207ENST00000553837 FLIIQ13045 1269 aa15.01□□□□□ -0.01
SHMT2-207ENST00000553837 NBPF6Q5VWK0 638 aa15.01□□□□□ -0.01
SHMT2-207ENST00000553837 NBPF4Q96M43 638 aa15.01□□□□□ -0.01
SHMT2-207ENST00000553837 CCT4P50991 539 aaKnown RBP15□□□□□ -0.01
SHMT2-207ENST00000553837 IP6K1Q92551 441 aa15□□□□□ -0.01
SHMT2-207ENST00000553837 SETD1BQ9UPS6 1966 aaKnown RBP15□□□□□ -0.01
SHMT2-207ENST00000553837 TAF7Q15545 349 aaPredicted RBP15□□□□□ -0.01
SHMT2-207ENST00000553837 ESCO1Q5FWF5 840 aa15□□□□□ -0.01
SHMT2-207ENST00000553837 KLHL40Q2TBA0 621 aa14.99□□□□□ -0.01
SHMT2-207ENST00000553837 CLEC17AQ6ZS10 378 aa14.99□□□□□ -0.01
SHMT2-207ENST00000553837 STK31Q9BXU1 1019 aa14.99□□□□□ -0.01
SHMT2-207ENST00000553837 FAM13BQ9NYF5 915 aa14.99□□□□□ -0.01
SHMT2-207ENST00000553837 ZNF142P52746 1687 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-207ENST00000553837 RGPD2P0DJD1 1756 aa14.99□□□□□ -0.01
SHMT2-207ENST00000553837 SDSP20132 328 aa14.98□□□□□ -0.01
SHMT2-207ENST00000553837 FKBP5Q13451 457 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-207ENST00000553837 CCDC30Q5VVM6 783 aa14.98□□□□□ -0.01
SHMT2-207ENST00000553837 LGR6Q9HBX8 967 aa14.98□□□□□ -0.01
SHMT2-207ENST00000553837 R3HCC1Q9Y3T6 440 aaKnown RBP14.98□□□□□ -0.01
SHMT2-207ENST00000553837 ADGRL3Q9HAR2 1447 aa14.98□□□□□ -0.01
SHMT2-207ENST00000553837 ZNF500O60304 480 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-207ENST00000553837 ZBTB7CA1YPR0 619 aa14.97□□□□□ -0.01
SHMT2-207ENST00000553837 XPCQ01831 940 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-207ENST00000553837 PSME1Q06323 249 aa14.97□□□□□ -0.01
SHMT2-207ENST00000553837 LRRC59Q96AG4 307 aaKnown RBP14.97□□□□□ -0.01
SHMT2-207ENST00000553837 ORAI2Q96SN7 254 aa14.97□□□□□ -0.01
SHMT2-207ENST00000553837 NOL7Q9UMY1 257 aaKnown RBP14.97□□□□□ -0.01
SHMT2-207ENST00000553837 PNMA6EA0A0J9YXQ4 647 aa14.97□□□□□ -0.01
SHMT2-207ENST00000553837 CSPP1Q1MSJ5 1256 aa14.97□□□□□ -0.01
SHMT2-207ENST00000553837 EXOC6BQ9Y2D4 811 aa14.97□□□□□ -0.01
SHMT2-207ENST00000553837 DDX49Q9Y6V7 483 aaKnown RBP14.97□□□□□ -0.01
SHMT2-207ENST00000553837 CEMIPQ8WUJ3 1361 aa14.96□□□□□ -0.01
SHMT2-207ENST00000553837 GNAI2P04899 355 aa14.96□□□□□ -0.01
SHMT2-207ENST00000553837 PHAXQ9H814 394 aaKnown RBP14.96□□□□□ -0.01
SHMT2-207ENST00000553837 KCNQ3O43525 872 aa14.95□□□□□ -0.02
SHMT2-207ENST00000553837 ZNF445P59923 1031 aa14.95□□□□□ -0.02
SHMT2-207ENST00000553837 UTP14CQ5TAP6 766 aaKnown RBP14.95□□□□□ -0.02
SHMT2-207ENST00000553837 BBXQ8WY36 941 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-207ENST00000553837 USP26Q9BXU7 913 aa14.95□□□□□ -0.02
SHMT2-207ENST00000553837 FOXD4L1Q9NU39 408 aa14.95□□□□□ -0.02
SHMT2-207ENST00000553837 K7ELQ4 463 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-207ENST00000553837 DYNC1I1O14576 645 aa14.95□□□□□ -0.02
SHMT2-207ENST00000553837 TSHZ3Q63HK5 1081 aa14.95□□□□□ -0.02
SHMT2-207ENST00000553837 MED1Q15648 1581 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-207ENST00000553837 HMMRO75330 724 aa14.94□□□□□ -0.02
SHMT2-207ENST00000553837 BABAM1Q9NWV8 329 aa14.94□□□□□ -0.02
SHMT2-207ENST00000553837 SALL3Q9BXA9 1300 aa14.94□□□□□ -0.02
SHMT2-207ENST00000553837 MCM5P33992 734 aa14.94□□□□□ -0.02
SHMT2-207ENST00000553837 USP44Q9H0E7 712 aa14.94□□□□□ -0.02
SHMT2-207ENST00000553837 UQCRHLA0A096LP55 91 aa14.93□□□□□ -0.02
SHMT2-207ENST00000553837 UQCRHP07919 91 aa14.93□□□□□ -0.02
SHMT2-207ENST00000553837 PDE1AP54750 535 aa14.93□□□□□ -0.02
SHMT2-207ENST00000553837 HDGFL1Q5TGJ6 251 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms