RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 SMARCA5O60264 1052 aaPredicted RBP18.14■□□□□ 0.49
ARHGEF40-202ENST00000553709 PIP4K2AP48426 406 aaPredicted RBP18.14■□□□□ 0.49
ARHGEF40-202ENST00000553709 MPNDQ8N594 471 aa18.14■□□□□ 0.49
ARHGEF40-202ENST00000553709 CFAP45Q9UL16 551 aa18.14■□□□□ 0.49
ARHGEF40-202ENST00000553709 TRIM27P14373 513 aa18.14■□□□□ 0.49
ARHGEF40-202ENST00000553709 TTLL5Q6EMB2 1281 aa18.14■□□□□ 0.49
ARHGEF40-202ENST00000553709 RAB11FIP3O75154 756 aa18.14■□□□□ 0.49
ARHGEF40-202ENST00000553709 SERPINC1P01008 464 aa18.14■□□□□ 0.49
ARHGEF40-202ENST00000553709 FKBP4Q02790 459 aaKnown RBP eCLIP18.14■□□□□ 0.49
ARHGEF40-202ENST00000553709 NME9Q86XW9 330 aa18.14■□□□□ 0.49
ARHGEF40-202ENST00000553709 CAGE1Q8TC20 777 aa18.14■□□□□ 0.49
ARHGEF40-202ENST00000553709 DDX54Q8TDD1 881 aaKnown RBP18.14■□□□□ 0.49
ARHGEF40-202ENST00000553709 NUP62CLQ9H1M0 184 aa18.14■□□□□ 0.49
ARHGEF40-202ENST00000553709 WASLO00401 505 aaPredicted RBP18.13■□□□□ 0.49
ARHGEF40-202ENST00000553709 CASTP20810 708 aaKnown RBP18.13■□□□□ 0.49
ARHGEF40-202ENST00000553709 CEP126Q9P2H0 1117 aa18.13■□□□□ 0.49
ARHGEF40-202ENST00000553709 CTNNA3Q9UI47 895 aa18.13■□□□□ 0.49
ARHGEF40-202ENST00000553709 TESK2Q96S53 571 aa18.13■□□□□ 0.49
ARHGEF40-202ENST00000553709 GLRX3O76003 335 aaKnown RBP18.13■□□□□ 0.49
ARHGEF40-202ENST00000553709 PHF23Q9BUL5 403 aaPredicted RBP18.13■□□□□ 0.49
ARHGEF40-202ENST00000553709 EMILIN1Q9Y6C2 1016 aa18.13■□□□□ 0.49
ARHGEF40-202ENST00000553709 CDR1P51861 262 aa18.12■□□□□ 0.49
ARHGEF40-202ENST00000553709 NSD2O96028 1365 aa18.12■□□□□ 0.49
ARHGEF40-202ENST00000553709 TBC1D2Q9BYX2 928 aa18.12■□□□□ 0.49
ARHGEF40-202ENST00000553709 CCDC69A6NI79 296 aa18.11■□□□□ 0.49
ARHGEF40-202ENST00000553709 BRPF1P55201 1214 aaPredicted RBP18.11■□□□□ 0.49
ARHGEF40-202ENST00000553709 RBM10P98175 930 aaKnown RBP18.11■□□□□ 0.49
ARHGEF40-202ENST00000553709 SAMD1Q6SPF0 538 aaPredicted RBP18.11■□□□□ 0.49
ARHGEF40-202ENST00000553709 MAGEC2Q9UBF1 373 aaPredicted RBP18.11■□□□□ 0.49
ARHGEF40-202ENST00000553709 ERCC4Q92889 916 aaPredicted RBP18.11■□□□□ 0.49
ARHGEF40-202ENST00000553709 RIMS2Q9UQ26 1411 aa18.11■□□□□ 0.49
ARHGEF40-202ENST00000553709 UPF3BQ9BZI7 483 aaKnown RBP18.11■□□□□ 0.49
ARHGEF40-202ENST00000553709 PRM3Q9NNZ6 103 aa18.11■□□□□ 0.49
ARHGEF40-202ENST00000553709 DACH1Q9UI36 760 aa18.11■□□□□ 0.49
ARHGEF40-202ENST00000553709 KCNH5Q8NCM2 988 aa18.1■□□□□ 0.49
ARHGEF40-202ENST00000553709 AMOTL2Q9Y2J4 779 aa18.1■□□□□ 0.49
ARHGEF40-202ENST00000553709 SYCE3A1L190 88 aa18.1■□□□□ 0.49
ARHGEF40-202ENST00000553709 CDKL5O76039 1030 aa18.1■□□□□ 0.49
ARHGEF40-202ENST00000553709 CDK5RAP3Q96JB5 506 aa18.1■□□□□ 0.49
ARHGEF40-202ENST00000553709 CEP57L1Q8IYX8 460 aa18.09■□□□□ 0.49
ARHGEF40-202ENST00000553709 TAF7Q15545 349 aaPredicted RBP18.09■□□□□ 0.49
ARHGEF40-202ENST00000553709 CCDC112Q8NEF3 446 aa18.09■□□□□ 0.49
ARHGEF40-202ENST00000553709 MPHOSPH8Q99549 860 aa18.09■□□□□ 0.49
ARHGEF40-202ENST00000553709 CLASP1Q7Z460 1538 aa18.09■□□□□ 0.49
ARHGEF40-202ENST00000553709 CT47A1Q5JQC4 288 aaPredicted RBP18.09■□□□□ 0.49
ARHGEF40-202ENST00000553709 KLHL34Q8N239 644 aa18.08■□□□□ 0.49
ARHGEF40-202ENST00000553709 IKQ13123 557 aaPredicted RBP18.08■□□□□ 0.49
ARHGEF40-202ENST00000553709 PRDM11Q9NQV5 511 aa18.08■□□□□ 0.48
ARHGEF40-202ENST00000553709 ARAP3Q8WWN8 1544 aa18.08■□□□□ 0.48
ARHGEF40-202ENST00000553709 ZSCAN30Q86W11 494 aa18.07■□□□□ 0.48
ARHGEF40-202ENST00000553709 ZMYM3Q14202 1370 aa18.07■□□□□ 0.48
ARHGEF40-202ENST00000553709 F6X3S4 739 aa18.07■□□□□ 0.48
ARHGEF40-202ENST00000553709 MAP3K11Q16584 847 aa18.07■□□□□ 0.48
ARHGEF40-202ENST00000553709 PRPF40BQ6NWY9 871 aaKnown RBP18.07■□□□□ 0.48
ARHGEF40-202ENST00000553709 NUP133Q8WUM0 1156 aa18.07■□□□□ 0.48
ARHGEF40-202ENST00000553709 PODXL2Q9NZ53 605 aa18.07■□□□□ 0.48
ARHGEF40-202ENST00000553709 CCDC83Q8IWF9 413 aa18.07■□□□□ 0.48
ARHGEF40-202ENST00000553709 STK11IPQ8N1F8 1099 aa18.07■□□□□ 0.48
ARHGEF40-202ENST00000553709 XPCQ01831 940 aaPredicted RBP18.06■□□□□ 0.48
ARHGEF40-202ENST00000553709 PPFIBP1Q86W92 1011 aa18.06■□□□□ 0.48
ARHGEF40-202ENST00000553709 CBFA2T2O43439 604 aa18.06■□□□□ 0.48
ARHGEF40-202ENST00000553709 PUS7Q96PZ0 661 aaKnown RBP18.06■□□□□ 0.48
ARHGEF40-202ENST00000553709 KDM5DQ9BY66 1539 aa18.06■□□□□ 0.48
ARHGEF40-202ENST00000553709 IGHDP01880 384 aa18.06■□□□□ 0.48
ARHGEF40-202ENST00000553709 PTPRCP08575 1304 aa18.06■□□□□ 0.48
ARHGEF40-202ENST00000553709 MLH3Q9UHC1 1453 aa18.06■□□□□ 0.48
ARHGEF40-202ENST00000553709 ZFYVE16Q7Z3T8 1539 aa18.06■□□□□ 0.48
ARHGEF40-202ENST00000553709 BMP2KLQ5H9B9 411 aa18.06■□□□□ 0.48
ARHGEF40-202ENST00000553709 LARP1Q6PKG0 1096 aaKnown RBP18.06■□□□□ 0.48
ARHGEF40-202ENST00000553709 UQCRHLA0A096LP55 91 aa18.05■□□□□ 0.48
ARHGEF40-202ENST00000553709 UQCRHP07919 91 aa18.05■□□□□ 0.48
ARHGEF40-202ENST00000553709 DDX11Q96FC9 970 aa18.05■□□□□ 0.48
ARHGEF40-202ENST00000553709 ASXL1Q8IXJ9 1541 aa18.05■□□□□ 0.48
ARHGEF40-202ENST00000553709 ZC3H6P61129 1189 aaKnown RBP18.05■□□□□ 0.48
ARHGEF40-202ENST00000553709 FERMT3Q86UX7 667 aa18.05■□□□□ 0.48
ARHGEF40-202ENST00000553709 NOM1Q5C9Z4 860 aaKnown RBP18.05■□□□□ 0.48
ARHGEF40-202ENST00000553709 CCAR1Q8IX12 1150 aaKnown RBP18.05■□□□□ 0.48
ARHGEF40-202ENST00000553709 ZNHIT6Q9NWK9 470 aaKnown RBP18.05■□□□□ 0.48
ARHGEF40-202ENST00000553709 TNPO1Q92973 898 aaKnown RBP18.05■□□□□ 0.48
ARHGEF40-202ENST00000553709 PLEKHH1Q9ULM0 1364 aa18.05■□□□□ 0.48
ARHGEF40-202ENST00000553709 NOL7Q9UMY1 257 aaKnown RBP18.05■□□□□ 0.48
ARHGEF40-202ENST00000553709 SSFA2P28290 1259 aa18.04■□□□□ 0.48
ARHGEF40-202ENST00000553709 IMMTQ16891 758 aaKnown RBP18.04■□□□□ 0.48
ARHGEF40-202ENST00000553709 IL16Q14005 1332 aa18.04■□□□□ 0.48
ARHGEF40-202ENST00000553709 SH2B1Q9NRF2 756 aaPredicted RBP18.04■□□□□ 0.48
ARHGEF40-202ENST00000553709 LRRFIP2Q9Y608 721 aaKnown RBP18.04■□□□□ 0.48
ARHGEF40-202ENST00000553709 TDO2P48775 406 aa18.04■□□□□ 0.48
ARHGEF40-202ENST00000553709 STIM1Q13586 685 aa18.04■□□□□ 0.48
ARHGEF40-202ENST00000553709 COL17A1Q9UMD9 1497 aaPredicted RBP18.03■□□□□ 0.48
ARHGEF40-202ENST00000553709 LRRIQ1Q96JM4 1722 aa18.03■□□□□ 0.48
ARHGEF40-202ENST00000553709 PATL2C9JE40 543 aaKnown RBP18.03■□□□□ 0.48
ARHGEF40-202ENST00000553709 UBAC1Q9BSL1 405 aa18.03■□□□□ 0.48
ARHGEF40-202ENST00000553709 PLXNC1O60486 1568 aa18.03■□□□□ 0.48
ARHGEF40-202ENST00000553709 PARD3Q8TEW0 1356 aa18.03■□□□□ 0.48
ARHGEF40-202ENST00000553709 AMOTQ4VCS5 1084 aa18.03■□□□□ 0.48
ARHGEF40-202ENST00000553709 TBC1D9Q6ZT07 1266 aa18.03■□□□□ 0.48
ARHGEF40-202ENST00000553709 FILIP1Q7Z7B0 1213 aa18.03■□□□□ 0.48
ARHGEF40-202ENST00000553709 DNAAF4Q8WXU2 420 aa18.02■□□□□ 0.48
ARHGEF40-202ENST00000553709 BOLA2Q9H3K6 86 aa18.02■□□□□ 0.48
ARHGEF40-202ENST00000553709 U3KPZ7 1027 aaPredicted RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 110.1 ms