RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 AMOTL2Q9Y2J4 779 aa9.22□□□□□ -0.93
LIMA1-213ENST00000552720 FLT4P35916 1363 aa9.22□□□□□ -0.93
LIMA1-213ENST00000552720 CYP2E1P05181 493 aaPredicted RBP9.22□□□□□ -0.93
LIMA1-213ENST00000552720 CLCN1P35523 988 aa9.22□□□□□ -0.93
LIMA1-213ENST00000552720 FKBP5Q13451 457 aaPredicted RBP9.22□□□□□ -0.93
LIMA1-213ENST00000552720 NGDNQ8NEJ9 315 aaKnown RBP9.22□□□□□ -0.93
LIMA1-213ENST00000552720 LTV1Q96GA3 475 aaPredicted RBP9.22□□□□□ -0.93
LIMA1-213ENST00000552720 ZDHHC9Q9Y397 364 aa9.22□□□□□ -0.93
LIMA1-213ENST00000552720 TCHHQ07283 1943 aa9.22□□□□□ -0.93
LIMA1-213ENST00000552720 SBNO1A3KN83 1393 aa9.21□□□□□ -0.93
LIMA1-213ENST00000552720 KDRP35968 1356 aa9.21□□□□□ -0.93
LIMA1-213ENST00000552720 PLEKHG1Q9ULL1 1385 aa9.21□□□□□ -0.93
LIMA1-213ENST00000552720 ERC2O15083 957 aa9.21□□□□□ -0.93
LIMA1-213ENST00000552720 HMMRO75330 724 aa9.21□□□□□ -0.93
LIMA1-213ENST00000552720 NCLP19338 710 aaKnown RBP9.21□□□□□ -0.93
LIMA1-213ENST00000552720 CASC1Q6TDU7 716 aa9.21□□□□□ -0.93
LIMA1-213ENST00000552720 CLEC17AQ6ZS10 378 aa9.21□□□□□ -0.93
LIMA1-213ENST00000552720 PALD1Q9ULE6 856 aa9.21□□□□□ -0.93
LIMA1-213ENST00000552720 LRRC37A3O60309 1634 aa9.21□□□□□ -0.94
LIMA1-213ENST00000552720 GOLGA6L22H0YM25 854 aa9.21□□□□□ -0.94
LIMA1-213ENST00000552720 GNAI2P04899 355 aa9.21□□□□□ -0.94
LIMA1-213ENST00000552720 CCT4P50991 539 aaKnown RBP9.21□□□□□ -0.94
LIMA1-213ENST00000552720 FLIIQ13045 1269 aa9.21□□□□□ -0.94
LIMA1-213ENST00000552720 KLHL40Q2TBA0 621 aa9.21□□□□□ -0.94
LIMA1-213ENST00000552720 CAVIN1Q6NZI2 390 aaKnown RBP9.21□□□□□ -0.94
LIMA1-213ENST00000552720 NOL8Q76FK4 1167 aaKnown RBP9.21□□□□□ -0.94
LIMA1-213ENST00000552720 LMBRD1Q9NUN5 540 aa9.21□□□□□ -0.94
LIMA1-213ENST00000552720 IGSF1Q8N6C5 1336 aa9.21□□□□□ -0.94
LIMA1-213ENST00000552720 DIP2AQ14689 1571 aa9.2□□□□□ -0.94
LIMA1-213ENST00000552720 ESPNB1AK53 854 aa9.2□□□□□ -0.94
LIMA1-213ENST00000552720 ST18O60284 1047 aa9.2□□□□□ -0.94
LIMA1-213ENST00000552720 UNC5CLQ8IV45 518 aa9.2□□□□□ -0.94
LIMA1-213ENST00000552720 USHBP1Q8N6Y0 703 aa9.2□□□□□ -0.94
LIMA1-213ENST00000552720 NAP1L5Q96NT1 182 aaPredicted RBP9.2□□□□□ -0.94
LIMA1-213ENST00000552720 STK31Q9BXU1 1019 aa9.2□□□□□ -0.94
LIMA1-213ENST00000552720 ISY1Q9ULR0 285 aaKnown RBP9.2□□□□□ -0.94
LIMA1-213ENST00000552720 SALL3Q9BXA9 1300 aa9.2□□□□□ -0.94
LIMA1-213ENST00000552720 REC8O95072 547 aa9.2□□□□□ -0.94
LIMA1-213ENST00000552720 HOXD11P31277 338 aaPredicted RBP9.2□□□□□ -0.94
LIMA1-213ENST00000552720 NEK4P51957 841 aa9.2□□□□□ -0.94
LIMA1-213ENST00000552720 NLRP6P59044 892 aa9.2□□□□□ -0.94
LIMA1-213ENST00000552720 RILPL2Q969X0 211 aa9.2□□□□□ -0.94
LIMA1-213ENST00000552720 OSBPL3Q9H4L5 887 aa9.2□□□□□ -0.94
LIMA1-213ENST00000552720 RNF216Q9NWF9 866 aaPredicted RBP9.2□□□□□ -0.94
LIMA1-213ENST00000552720 RBM27Q9P2N5 1060 aaKnown RBP9.2□□□□□ -0.94
LIMA1-213ENST00000552720 LRRFIP2Q9Y608 721 aaKnown RBP9.2□□□□□ -0.94
LIMA1-213ENST00000552720 N4BP2Q86UW6 1770 aaPredicted RBP9.19□□□□□ -0.94
LIMA1-213ENST00000552720 TRIM6-TRIM34B2RNG4 842 aa9.19□□□□□ -0.94
LIMA1-213ENST00000552720 PRPF40AO75400 957 aaKnown RBP9.19□□□□□ -0.94
LIMA1-213ENST00000552720 NUCB2P80303 420 aa9.19□□□□□ -0.94
LIMA1-213ENST00000552720 IL17REQ8NFR9 667 aa9.19□□□□□ -0.94
LIMA1-213ENST00000552720 IL25Q9H293 177 aa9.19□□□□□ -0.94
LIMA1-213ENST00000552720 ATF5Q9Y2D1 282 aaPredicted RBP9.19□□□□□ -0.94
LIMA1-213ENST00000552720 NWD1Q149M9 1564 aa9.19□□□□□ -0.94
LIMA1-213ENST00000552720 TTC21AQ8NDW8 1320 aa9.19□□□□□ -0.94
LIMA1-213ENST00000552720 MX1P20591 662 aa9.19□□□□□ -0.94
LIMA1-213ENST00000552720 NASPP49321 788 aaPredicted RBP9.19□□□□□ -0.94
LIMA1-213ENST00000552720 GPT2Q8TD30 523 aa9.19□□□□□ -0.94
LIMA1-213ENST00000552720 TRIM44Q96DX7 344 aaPredicted RBP9.19□□□□□ -0.94
LIMA1-213ENST00000552720 LRRCC1Q9C099 1032 aa9.19□□□□□ -0.94
LIMA1-213ENST00000552720 PHAXQ9H814 394 aaKnown RBP9.19□□□□□ -0.94
LIMA1-213ENST00000552720 IL1RAPL2Q9NP60 686 aa9.19□□□□□ -0.94
LIMA1-213ENST00000552720 NSFL1CQ9UNZ2 370 aaKnown RBP9.19□□□□□ -0.94
LIMA1-213ENST00000552720 LTN1O94822 1766 aa9.18□□□□□ -0.94
LIMA1-213ENST00000552720 RGPD2P0DJD1 1756 aa9.18□□□□□ -0.94
LIMA1-213ENST00000552720 GNAT3A8MTJ3 354 aa9.18□□□□□ -0.94
LIMA1-213ENST00000552720 PTMSP20962 102 aa9.18□□□□□ -0.94
LIMA1-213ENST00000552720 HOXC9P31274 260 aa9.18□□□□□ -0.94
LIMA1-213ENST00000552720 ZSCAN23Q3MJ62 389 aa9.18□□□□□ -0.94
LIMA1-213ENST00000552720 ESYT1Q9BSJ8 1104 aa9.18□□□□□ -0.94
LIMA1-213ENST00000552720 MAP4K4O95819 1239 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-213ENST00000552720 TMX3Q96JJ7 454 aa9.17□□□□□ -0.94
LIMA1-213ENST00000552720 ANO2Q9NQ90 1003 aa9.17□□□□□ -0.94
LIMA1-213ENST00000552720 ATXN8OSP0DMR3 200 aa9.17□□□□□ -0.94
LIMA1-213ENST00000552720 ATP8B2P98198 1209 aa9.17□□□□□ -0.94
LIMA1-213ENST00000552720 CCDC30Q5VVM6 783 aa9.17□□□□□ -0.94
LIMA1-213ENST00000552720 NUTM1Q86Y26 1132 aa9.17□□□□□ -0.94
LIMA1-213ENST00000552720 USP44Q9H0E7 712 aa9.17□□□□□ -0.94
LIMA1-213ENST00000552720 IBTKQ9P2D0 1353 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-213ENST00000552720 CHMLP26374 656 aa9.16□□□□□ -0.94
LIMA1-213ENST00000552720 FOXD4L6Q3SYB3 417 aaPredicted RBP9.16□□□□□ -0.94
LIMA1-213ENST00000552720 FOXD4L3Q6VB84 417 aaPredicted RBP9.16□□□□□ -0.94
LIMA1-213ENST00000552720 UPF3BQ9BZI7 483 aaKnown RBP9.16□□□□□ -0.94
LIMA1-213ENST00000552720 RBSNQ9H1K0 784 aa9.16□□□□□ -0.94
LIMA1-213ENST00000552720 EID1Q9Y6B2 187 aa9.16□□□□□ -0.94
LIMA1-213ENST00000552720 PRIM1P49642 420 aaKnown RBP9.16□□□□□ -0.94
LIMA1-213ENST00000552720 C14orf37Q86TY3 774 aa9.16□□□□□ -0.94
LIMA1-213ENST00000552720 RBM33Q96EV2 1170 aaKnown RBP9.16□□□□□ -0.94
LIMA1-213ENST00000552720 CWC22Q9HCG8 908 aaKnown RBP9.16□□□□□ -0.94
LIMA1-213ENST00000552720 MYCNP04198 464 aaPredicted RBP9.15□□□□□ -0.94
LIMA1-213ENST00000552720 GNAI3P08754 354 aa9.15□□□□□ -0.94
LIMA1-213ENST00000552720 EIF2S2P20042 333 aaKnown RBP9.15□□□□□ -0.94
LIMA1-213ENST00000552720 ZNF445P59923 1031 aa9.15□□□□□ -0.94
LIMA1-213ENST00000552720 ABTB2Q8N961 1025 aa9.15□□□□□ -0.94
LIMA1-213ENST00000552720 TMEM63CQ9P1W3 806 aa9.15□□□□□ -0.94
LIMA1-213ENST00000552720 MAP3K5Q99683 1374 aa9.15□□□□□ -0.94
LIMA1-213ENST00000552720 PLEKHG5O94827 1062 aa9.15□□□□□ -0.94
LIMA1-213ENST00000552720 ANXA1P04083 346 aa9.15□□□□□ -0.94
LIMA1-213ENST00000552720 VSIG10Q8N0Z9 540 aa9.15□□□□□ -0.94
LIMA1-213ENST00000552720 KCNQ3O43525 872 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms