RNA–Protein interactions for RNA: ENST00000550208.1

BRF1-216, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 3

Gene BRF1, Length 1,040 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-216ENST00000550208 DCTN1Q14203 1278 aa29.8■■■□□ 2.36
BRF1-216ENST00000550208 SLC27A3Q5K4L6 730 aa29.8■■■□□ 2.36
BRF1-216ENST00000550208 NBPF14Q5TI25 921 aa29.8■■■□□ 2.36
BRF1-216ENST00000550208 DIEXFQ68CQ4 756 aaKnown RBP29.8■■■□□ 2.36
BRF1-216ENST00000550208 CCNL1Q9UK58 526 aaPredicted RBP29.8■■■□□ 2.36
BRF1-216ENST00000550208 NUP188Q5SRE5 1749 aa29.79■■■□□ 2.36
BRF1-216ENST00000550208 ADAMTS7Q9UKP4 1686 aa29.79■■■□□ 2.36
BRF1-216ENST00000550208 VIRMAQ69YN4 1812 aaKnown RBP29.79■■■□□ 2.36
BRF1-216ENST00000550208 TMPOP42166 694 aaKnown RBP29.78■■■□□ 2.36
BRF1-216ENST00000550208 LY75O60449 1722 aa29.78■■■□□ 2.36
BRF1-216ENST00000550208 RIPK4P57078 832 aa29.77■■■□□ 2.36
BRF1-216ENST00000550208 TEFQ10587 303 aa29.77■■■□□ 2.36
BRF1-216ENST00000550208 CEMIPQ8WUJ3 1361 aa29.77■■■□□ 2.36
BRF1-216ENST00000550208 ANO8Q9HCE9 1232 aaPredicted RBP29.76■■■□□ 2.35
BRF1-216ENST00000550208 RRP7AQ9Y3A4 280 aaKnown RBP29.76■■■□□ 2.35
BRF1-216ENST00000550208 LOC102724428A0A0B4J2F2 783 aa29.75■■■□□ 2.35
BRF1-216ENST00000550208 PSDA5PKW4 1024 aaPredicted RBP29.75■■■□□ 2.35
BRF1-216ENST00000550208 SIK1P57059 783 aa29.75■■■□□ 2.35
BRF1-216ENST00000550208 SLC39A6Q13433 755 aa29.75■■■□□ 2.35
BRF1-216ENST00000550208 R3HDM1Q15032 1099 aaKnown RBP29.75■■■□□ 2.35
BRF1-216ENST00000550208 MRC1P22897 1456 aa29.74■■■□□ 2.35
BRF1-216ENST00000550208 NEUROD2Q15784 382 aa29.74■■■□□ 2.35
BRF1-216ENST00000550208 RBM42Q9BTD8 480 aaKnown RBP29.74■■■□□ 2.35
BRF1-216ENST00000550208 DLG5Q8TDM6 1919 aa29.73■■■□□ 2.35
BRF1-216ENST00000550208 SLC4A9Q96Q91 983 aa29.72■■■□□ 2.35
BRF1-216ENST00000550208 PTCD1O75127 700 aaKnown RBP29.71■■■□□ 2.35
BRF1-216ENST00000550208 THUMPD2Q9BTF0 503 aaKnown RBP29.71■■■□□ 2.35
BRF1-216ENST00000550208 STK32BQ9NY57 414 aa29.71■■■□□ 2.35
BRF1-216ENST00000550208 APAF1O14727 1248 aa29.7■■■□□ 2.35
BRF1-216ENST00000550208 ATP6V1AP38606 617 aa29.7■■■□□ 2.35
BRF1-216ENST00000550208 SLC15A2Q16348 729 aa29.7■■■□□ 2.35
BRF1-216ENST00000550208 ITPK1Q13572 414 aa29.69■■■□□ 2.34
BRF1-216ENST00000550208 ZNF827Q17R98 1081 aa29.69■■■□□ 2.34
BRF1-216ENST00000550208 AKT1S1Q96B36 256 aa29.68■■■□□ 2.34
BRF1-216ENST00000550208 BTBD11A6QL63 1104 aa29.67■■■□□ 2.34
BRF1-216ENST00000550208 FAM9BQ8IZU0 186 aa29.67■■■□□ 2.34
BRF1-216ENST00000550208 KCNQ3O43525 872 aa29.66■■■□□ 2.34
BRF1-216ENST00000550208 TAF7Q15545 349 aaPredicted RBP29.66■■■□□ 2.34
BRF1-216ENST00000550208 TRIM35Q9UPQ4 493 aa29.66■■■□□ 2.34
BRF1-216ENST00000550208 PAPPAQ13219 1627 aa29.65■■■□□ 2.34
BRF1-216ENST00000550208 MIER1Q8N108 512 aa29.65■■■□□ 2.34
BRF1-216ENST00000550208 LINC00116Q8NCU8 138 aa29.65■■■□□ 2.34
BRF1-216ENST00000550208 SIPA1L3O60292 1781 aaPredicted RBP29.64■■■□□ 2.34
BRF1-216ENST00000550208 LMOD3Q0VAK6 560 aa29.64■■■□□ 2.34
BRF1-216ENST00000550208 ZNF790Q6PG37 636 aa29.64■■■□□ 2.34
BRF1-216ENST00000550208 MIS18AQ9NYP9 233 aa29.64■■■□□ 2.34
BRF1-216ENST00000550208 SENP3-EIF4A1A0A087X0R7 540 aa29.63■■■□□ 2.33
BRF1-216ENST00000550208 CCER2I3L3R5 266 aa29.63■■■□□ 2.33
BRF1-216ENST00000550208 TTC5Q8N0Z6 440 aa29.63■■■□□ 2.33
BRF1-216ENST00000550208 HMGB2P26583 209 aaKnown RBP29.61■■■□□ 2.33
BRF1-216ENST00000550208 TAF1LQ8IZX4 1826 aa29.6■■■□□ 2.33
BRF1-216ENST00000550208 ZNF496Q96IT1 587 aaPredicted RBP29.6■■■□□ 2.33
BRF1-216ENST00000550208 TFCP2L1Q9NZI6 479 aa29.6■■■□□ 2.33
BRF1-216ENST00000550208 PDGFDQ9GZP0 370 aaPredicted RBP29.59■■■□□ 2.33
BRF1-216ENST00000550208 C5P01031 1676 aa29.58■■■□□ 2.33
BRF1-216ENST00000550208 KCPQ6ZWJ8 1503 aa29.58■■■□□ 2.33
BRF1-216ENST00000550208 DNAJC10Q8IXB1 793 aa29.58■■■□□ 2.33
BRF1-216ENST00000550208 SMIM5Q71RC9 77 aa29.55■■■□□ 2.32
BRF1-216ENST00000550208 VSIG10Q8N0Z9 540 aa29.55■■■□□ 2.32
BRF1-216ENST00000550208 AK7Q96M32 723 aa29.55■■■□□ 2.32
BRF1-216ENST00000550208 FMNL2Q96PY5 1086 aa29.55■■■□□ 2.32
BRF1-216ENST00000550208 ZNF831Q5JPB2 1677 aa29.55■■■□□ 2.32
BRF1-216ENST00000550208 C4BP0C0L5 1744 aa29.54■■■□□ 2.32
BRF1-216ENST00000550208 PNPLA7Q6ZV29 1317 aa29.53■■■□□ 2.32
BRF1-216ENST00000550208 AMIGO3Q86WK7 504 aa29.53■■■□□ 2.32
BRF1-216ENST00000550208 HEG1Q9ULI3 1381 aa29.52■■■□□ 2.32
BRF1-216ENST00000550208 UBR2Q8IWV8 1755 aa29.52■■■□□ 2.32
BRF1-216ENST00000550208 RC3H1Q5TC82 1133 aaKnown RBP29.52■■■□□ 2.32
BRF1-216ENST00000550208 GNPATO15228 680 aa29.5■■■□□ 2.31
BRF1-216ENST00000550208 CYP19A1P11511 503 aaPredicted RBP29.5■■■□□ 2.31
BRF1-216ENST00000550208 CRKLP46109 303 aaKnown RBP29.5■■■□□ 2.31
BRF1-216ENST00000550208 COL23A1Q86Y22 540 aaPredicted RBP29.5■■■□□ 2.31
BRF1-216ENST00000550208 TSPYL4Q9UJ04 414 aa29.5■■■□□ 2.31
BRF1-216ENST00000550208 LAS1LQ9Y4W2 734 aaKnown RBP29.5■■■□□ 2.31
BRF1-216ENST00000550208 TJP1Q07157 1748 aa29.5■■■□□ 2.31
BRF1-216ENST00000550208 CNTNAP4Q9C0A0 1308 aa29.49■■■□□ 2.31
BRF1-216ENST00000550208 SALL2Q9Y467 1007 aaPredicted RBP29.49■■■□□ 2.31
BRF1-216ENST00000550208 PRAMEF22A3QJZ6 481 aa29.48■■■□□ 2.31
BRF1-216ENST00000550208 EIF4A1P60842 406 aaKnown RBP29.48■■■□□ 2.31
BRF1-216ENST00000550208 INTS5Q6P9B9 1019 aaKnown RBP29.48■■■□□ 2.31
BRF1-216ENST00000550208 BABAM1Q9NWV8 329 aa29.48■■■□□ 2.31
BRF1-216ENST00000550208 TUBGCP6Q96RT7 1819 aa29.48■■■□□ 2.31
BRF1-216ENST00000550208 CHL1O00533 1208 aa29.47■■■□□ 2.31
BRF1-216ENST00000550208 MSH5O43196 834 aa29.47■■■□□ 2.31
BRF1-216ENST00000550208 PHF14O94880 888 aa29.47■■■□□ 2.31
BRF1-216ENST00000550208 TEX13AQ9BXU3 409 aaPredicted RBP29.47■■■□□ 2.31
BRF1-216ENST00000550208 COL5A3P25940 1745 aaPredicted RBP29.47■■■□□ 2.31
BRF1-216ENST00000550208 RPS6KA4O75676 772 aa29.46■■■□□ 2.31
BRF1-216ENST00000550208 ZBTB7AO95365 584 aa29.46■■■□□ 2.31
BRF1-216ENST00000550208 CCDC27Q2M243 656 aa29.46■■■□□ 2.31
BRF1-216ENST00000550208 USP16Q9Y5T5 823 aa29.46■■■□□ 2.31
BRF1-216ENST00000550208 MYH14Q7Z406 1995 aaKnown RBP29.46■■■□□ 2.31
BRF1-216ENST00000550208 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.45■■■□□ 2.31
BRF1-216ENST00000550208 SNRPA1P09661 255 aaKnown RBP29.45■■■□□ 2.31
BRF1-216ENST00000550208 NCBP3Q53F19 620 aaKnown RBP29.45■■■□□ 2.31
BRF1-216ENST00000550208 FLAD1Q8NFF5 587 aa29.45■■■□□ 2.31
BRF1-216ENST00000550208 CCDC87Q9NVE4 849 aa29.45■■■□□ 2.31
BRF1-216ENST00000550208 RTCBQ9Y3I0 505 aaKnown RBP29.45■■■□□ 2.31
BRF1-216ENST00000550208 CASZ1Q86V15 1759 aa29.44■■■□□ 2.3
BRF1-216ENST00000550208 STARD3NLO95772 234 aa29.44■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms