RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 BLOC1S2Q6QNY1 142 aa19.48■□□□□ 0.71
CUX1-213ENST00000549414 ZMYM4Q5VZL5 1548 aa19.48■□□□□ 0.71
CUX1-213ENST00000549414 GLRX3O76003 335 aaKnown RBP19.47■□□□□ 0.71
CUX1-213ENST00000549414 VPS53Q5VIR6 699 aa19.47■□□□□ 0.71
CUX1-213ENST00000549414 CCDC73Q6ZRK6 1079 aa19.47■□□□□ 0.71
CUX1-213ENST00000549414 FAM43AQ8N2R8 423 aa19.47■□□□□ 0.71
CUX1-213ENST00000549414 GRPEL1Q9HAV7 217 aa19.47■□□□□ 0.71
CUX1-213ENST00000549414 PRPF40BQ6NWY9 871 aaKnown RBP19.47■□□□□ 0.71
CUX1-213ENST00000549414 SAMD1Q6SPF0 538 aaPredicted RBP19.47■□□□□ 0.71
CUX1-213ENST00000549414 SASS6Q6UVJ0 657 aa19.47■□□□□ 0.71
CUX1-213ENST00000549414 CHPF2Q9P2E5 772 aa19.47■□□□□ 0.71
CUX1-213ENST00000549414 TTC39AQ5SRH9 613 aa19.47■□□□□ 0.71
CUX1-213ENST00000549414 LARP1Q6PKG0 1096 aaKnown RBP19.47■□□□□ 0.71
CUX1-213ENST00000549414 BLMP54132 1417 aaPredicted RBP19.47■□□□□ 0.71
CUX1-213ENST00000549414 SDSP20132 328 aa19.47■□□□□ 0.71
CUX1-213ENST00000549414 TTC22Q5TAA0 569 aa19.47■□□□□ 0.71
CUX1-213ENST00000549414 FERMT3Q86UX7 667 aa19.47■□□□□ 0.71
CUX1-213ENST00000549414 ERCC6L2Q5T890 1561 aa19.46■□□□□ 0.71
CUX1-213ENST00000549414 ATP5J2-PTCD1G3V325 749 aa19.46■□□□□ 0.71
CUX1-213ENST00000549414 ATP2B1P20020 1258 aa19.46■□□□□ 0.71
CUX1-213ENST00000549414 SLC39A6Q13433 755 aa19.46■□□□□ 0.71
CUX1-213ENST00000549414 RRP12Q5JTH9 1297 aaKnown RBP19.46■□□□□ 0.71
CUX1-213ENST00000549414 TNPO1Q92973 898 aaKnown RBP19.46■□□□□ 0.71
CUX1-213ENST00000549414 PDRG1Q9NUG6 133 aa19.46■□□□□ 0.71
CUX1-213ENST00000549414 YEATS2Q9ULM3 1422 aa19.46■□□□□ 0.71
CUX1-213ENST00000549414 PES1O00541 588 aaKnown RBP19.46■□□□□ 0.71
CUX1-213ENST00000549414 HSPA2P54652 639 aa19.46■□□□□ 0.71
CUX1-213ENST00000549414 CCDC158Q5M9N0 1113 aa19.46■□□□□ 0.71
CUX1-213ENST00000549414 CEP126Q9P2H0 1117 aa19.46■□□□□ 0.71
CUX1-213ENST00000549414 MTMR7Q9Y216 660 aa19.46■□□□□ 0.71
CUX1-213ENST00000549414 MYO5CQ9NQX4 1742 aa19.46■□□□□ 0.71
CUX1-213ENST00000549414 TTC21AQ8NDW8 1320 aa19.45■□□□□ 0.7
CUX1-213ENST00000549414 PIP4K2AP48426 406 aaPredicted RBP19.45■□□□□ 0.7
CUX1-213ENST00000549414 LARP1BQ659C4 914 aaKnown RBP19.45■□□□□ 0.7
CUX1-213ENST00000549414 ANKRD44Q8N8A2 993 aa19.45■□□□□ 0.7
CUX1-213ENST00000549414 WDR33Q9C0J8 1336 aaKnown RBP19.45■□□□□ 0.7
CUX1-213ENST00000549414 ZNF592Q92610 1267 aa19.45■□□□□ 0.7
CUX1-213ENST00000549414 PDCP20941 246 aa19.44■□□□□ 0.7
CUX1-213ENST00000549414 IL13P35225 146 aa19.44■□□□□ 0.7
CUX1-213ENST00000549414 SDF4Q9BRK5 362 aa19.44■□□□□ 0.7
CUX1-213ENST00000549414 TBC1D2BQ9UPU7 963 aa19.44■□□□□ 0.7
CUX1-213ENST00000549414 RAB11FIP3O75154 756 aa19.43■□□□□ 0.7
CUX1-213ENST00000549414 CCDC83Q8IWF9 413 aa19.43■□□□□ 0.7
CUX1-213ENST00000549414 CABLES1Q8TDN4 633 aa19.43■□□□□ 0.7
CUX1-213ENST00000549414 BCL11BQ9C0K0 894 aaPredicted RBP19.43■□□□□ 0.7
CUX1-213ENST00000549414 ZBTB3Q9H5J0 574 aa19.43■□□□□ 0.7
CUX1-213ENST00000549414 KDM2BQ8NHM5 1336 aa19.43■□□□□ 0.7
CUX1-213ENST00000549414 SMC5Q8IY18 1101 aa19.43■□□□□ 0.7
CUX1-213ENST00000549414 ERICH2A1L162 156 aa19.43■□□□□ 0.7
CUX1-213ENST00000549414 G2E3Q7L622 706 aa19.43■□□□□ 0.7
CUX1-213ENST00000549414 A0A087WZG4 1122 aa19.42■□□□□ 0.7
CUX1-213ENST00000549414 MARCH6O60337 910 aa19.42■□□□□ 0.7
CUX1-213ENST00000549414 DDX11Q96FC9 970 aa19.42■□□□□ 0.7
CUX1-213ENST00000549414 KAT6BQ8WYB5 2073 aa19.41■□□□□ 0.7
CUX1-213ENST00000549414 NOL10Q9BSC4 688 aaKnown RBP19.41■□□□□ 0.7
CUX1-213ENST00000549414 TSPY26PQ9H489 355 aa19.41■□□□□ 0.7
CUX1-213ENST00000549414 FLT4P35916 1363 aa19.41■□□□□ 0.7
CUX1-213ENST00000549414 UBE3BQ7Z3V4 1068 aa19.41■□□□□ 0.7
CUX1-213ENST00000549414 PIK3R4Q99570 1358 aa19.41■□□□□ 0.7
CUX1-213ENST00000549414 GDPD2Q9HCC8 539 aa19.4■□□□□ 0.7
CUX1-213ENST00000549414 PDE1AP54750 535 aa19.4■□□□□ 0.7
CUX1-213ENST00000549414 DHX16O60231 1041 aaKnown RBP19.4■□□□□ 0.7
CUX1-213ENST00000549414 TPD52L1Q16890 204 aaPredicted RBP19.4■□□□□ 0.7
CUX1-213ENST00000549414 FMNL2Q96PY5 1086 aa19.4■□□□□ 0.7
CUX1-213ENST00000549414 HYPKQ9NX55 129 aa19.4■□□□□ 0.7
CUX1-213ENST00000549414 ZBTB7BO15156 539 aaPredicted RBP19.39■□□□□ 0.7
CUX1-213ENST00000549414 BICDL1Q6ZP65 573 aa19.39■□□□□ 0.69
CUX1-213ENST00000549414 RHPN1Q8TCX5 695 aa19.39■□□□□ 0.69
CUX1-213ENST00000549414 ZFYVE9O95405 1425 aa19.39■□□□□ 0.69
CUX1-213ENST00000549414 SYCE3A1L190 88 aa19.39■□□□□ 0.69
CUX1-213ENST00000549414 HSP90AA2PQ14568 343 aaPredicted RBP19.39■□□□□ 0.69
CUX1-213ENST00000549414 CEP85Q6P2H3 762 aa19.39■□□□□ 0.69
CUX1-213ENST00000549414 OTUD7AQ8TE49 926 aaPredicted RBP19.39■□□□□ 0.69
CUX1-213ENST00000549414 FAM13BQ9NYF5 915 aa19.39■□□□□ 0.69
CUX1-213ENST00000549414 ERVK-7P63135 1459 aa19.39■□□□□ 0.69
CUX1-213ENST00000549414 SAFBQ15424 915 aaKnown RBP eCLIP19.38■□□□□ 0.69
CUX1-213ENST00000549414 MPHOSPH8Q99549 860 aa19.38■□□□□ 0.69
CUX1-213ENST00000549414 PHAXQ9H814 394 aaKnown RBP19.38■□□□□ 0.69
CUX1-213ENST00000549414 ECHDC1Q9NTX5 307 aa19.37■□□□□ 0.69
CUX1-213ENST00000549414 R3HCC1Q9Y3T6 440 aaKnown RBP19.37■□□□□ 0.69
CUX1-213ENST00000549414 IDH1O75874 414 aaKnown RBP19.37■□□□□ 0.69
CUX1-213ENST00000549414 NGLY1Q96IV0 654 aa19.37■□□□□ 0.69
CUX1-213ENST00000549414 IFNL2Q8IZJ0 200 aa19.37■□□□□ 0.69
CUX1-213ENST00000549414 TMOD3Q9NYL9 352 aa19.37■□□□□ 0.69
CUX1-213ENST00000549414 GPTP24298 496 aa19.36■□□□□ 0.69
CUX1-213ENST00000549414 DCTPP1Q9H773 170 aa19.36■□□□□ 0.69
CUX1-213ENST00000549414 KRT85P78386 507 aa19.36■□□□□ 0.69
CUX1-213ENST00000549414 LTKP29376 864 aa19.36■□□□□ 0.69
CUX1-213ENST00000549414 HOXC9P31274 260 aa19.36■□□□□ 0.69
CUX1-213ENST00000549414 SPC24Q8NBT2 197 aa19.36■□□□□ 0.69
CUX1-213ENST00000549414 TRIM34Q9BYJ4 488 aa19.36■□□□□ 0.69
CUX1-213ENST00000549414 TRIM5Q9C035 493 aa19.36■□□□□ 0.69
CUX1-213ENST00000549414 PA2G4Q9UQ80 394 aaKnown RBP19.36■□□□□ 0.69
CUX1-213ENST00000549414 PREX2Q70Z35 1606 aa19.35■□□□□ 0.69
CUX1-213ENST00000549414 ANKRD1Q15327 319 aa19.35■□□□□ 0.69
CUX1-213ENST00000549414 KINO60870 393 aaKnown RBP19.35■□□□□ 0.69
CUX1-213ENST00000549414 PPFIA3O75145 1194 aa19.35■□□□□ 0.69
CUX1-213ENST00000549414 COPS6Q7L5N1 327 aa19.34■□□□□ 0.69
CUX1-213ENST00000549414 AMOTL1Q8IY63 956 aa19.34■□□□□ 0.69
CUX1-213ENST00000549414 XAGE3Q8WTP9 111 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 116.2 ms