RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 PLEKHH1Q9ULM0 1364 aa11.57□□□□□ -0.56
VPS29-203ENST00000546588 SMAPO00193 183 aa11.57□□□□□ -0.56
VPS29-203ENST00000546588 PPP4CP60510 307 aa11.57□□□□□ -0.56
VPS29-203ENST00000546588 SAMD7Q7Z3H4 446 aa11.57□□□□□ -0.56
VPS29-203ENST00000546588 ANKRD36BQ8N2N9 1353 aa11.56□□□□□ -0.56
VPS29-203ENST00000546588 PLEKHG3A1L390 1219 aa11.56□□□□□ -0.56
VPS29-203ENST00000546588 AMHR2Q16671 573 aa11.56□□□□□ -0.56
VPS29-203ENST00000546588 RSPH6AQ9H0K4 717 aa11.56□□□□□ -0.56
VPS29-203ENST00000546588 NCOA3Q9Y6Q9 1424 aa11.56□□□□□ -0.56
VPS29-203ENST00000546588 LRRC7Q96NW7 1537 aa11.55□□□□□ -0.56
VPS29-203ENST00000546588 Q6ZNB5 142 aa11.55□□□□□ -0.56
VPS29-203ENST00000546588 PRAM1Q96QH2 718 aa11.55□□□□□ -0.56
VPS29-203ENST00000546588 PRKRIP1Q9H875 184 aaPredicted RBP11.55□□□□□ -0.56
VPS29-203ENST00000546588 CPSF1Q10570 1443 aaKnown RBP11.54□□□□□ -0.56
VPS29-203ENST00000546588 ANKARQ7Z5J8 1434 aa11.54□□□□□ -0.56
VPS29-203ENST00000546588 LCE2BO14633 110 aa11.54□□□□□ -0.56
VPS29-203ENST00000546588 TATDN2Q93075 761 aa11.54□□□□□ -0.56
VPS29-203ENST00000546588 NSD2O96028 1365 aa11.54□□□□□ -0.56
VPS29-203ENST00000546588 MARF1Q9Y4F3 1742 aaKnown RBP11.53□□□□□ -0.56
VPS29-203ENST00000546588 ANP32CO43423 234 aa11.53□□□□□ -0.56
VPS29-203ENST00000546588 RBM27Q9P2N5 1060 aaKnown RBP11.53□□□□□ -0.56
VPS29-203ENST00000546588 KIF1AQ12756 1690 aa11.52□□□□□ -0.56
VPS29-203ENST00000546588 ADGRL3Q9HAR2 1447 aa11.52□□□□□ -0.56
VPS29-203ENST00000546588 LAPTM4AQ15012 233 aa11.52□□□□□ -0.57
VPS29-203ENST00000546588 BCL11AQ9H165 835 aa11.52□□□□□ -0.57
VPS29-203ENST00000546588 DCCP43146 1447 aa11.52□□□□□ -0.57
VPS29-203ENST00000546588 NBPF26B4DH59 902 aa11.51□□□□□ -0.57
VPS29-203ENST00000546588 MTRQ99707 1265 aa11.51□□□□□ -0.57
VPS29-203ENST00000546588 PTGDRQ13258 359 aa11.5□□□□□ -0.57
VPS29-203ENST00000546588 RALBP1Q15311 655 aa11.5□□□□□ -0.57
VPS29-203ENST00000546588 TTC13Q8NBP0 860 aa11.5□□□□□ -0.57
VPS29-203ENST00000546588 SLC26A8Q96RN1 970 aa11.5□□□□□ -0.57
VPS29-203ENST00000546588 ARID3AQ99856 593 aa11.5□□□□□ -0.57
VPS29-203ENST00000546588 CDHR5Q9HBB8 845 aa11.5□□□□□ -0.57
VPS29-203ENST00000546588 PNMA3Q9UL41 463 aa11.5□□□□□ -0.57
VPS29-203ENST00000546588 A0A1W2PP64 1363 aa11.5□□□□□ -0.57
VPS29-203ENST00000546588 INSRP06213 1382 aa11.5□□□□□ -0.57
VPS29-203ENST00000546588 SHPRHQ149N8 1683 aa11.49□□□□□ -0.57
VPS29-203ENST00000546588 WASLO00401 505 aaPredicted RBP11.49□□□□□ -0.57
VPS29-203ENST00000546588 PANK3Q9H999 370 aa11.49□□□□□ -0.57
VPS29-203ENST00000546588 IL21Q9HBE4 155 aa11.49□□□□□ -0.57
VPS29-203ENST00000546588 POGKQ9P215 609 aa11.49□□□□□ -0.57
VPS29-203ENST00000546588 AMOTL2Q9Y2J4 779 aa11.49□□□□□ -0.57
VPS29-203ENST00000546588 WAPLQ7Z5K2 1190 aa11.48□□□□□ -0.57
VPS29-203ENST00000546588 STK26Q9P289 416 aa11.48□□□□□ -0.57
VPS29-203ENST00000546588 POLR3AO14802 1390 aaPredicted RBP11.48□□□□□ -0.57
VPS29-203ENST00000546588 BRD4O60885 1362 aaPredicted RBP11.48□□□□□ -0.57
VPS29-203ENST00000546588 TRPM3Q9HCF6 1732 aaPredicted RBP11.47□□□□□ -0.57
VPS29-203ENST00000546588 EDC4Q6P2E9 1401 aaKnown RBP11.47□□□□□ -0.57
VPS29-203ENST00000546588 PPIP5K1Q6PFW1 1433 aa11.47□□□□□ -0.57
VPS29-203ENST00000546588 SSH2Q76I76 1423 aa11.47□□□□□ -0.57
VPS29-203ENST00000546588 NSD3Q9BZ95 1437 aa11.47□□□□□ -0.57
VPS29-203ENST00000546588 KCNA6P17658 529 aa11.47□□□□□ -0.57
VPS29-203ENST00000546588 GIGYF2Q6Y7W6 1299 aaKnown RBP11.47□□□□□ -0.57
VPS29-203ENST00000546588 PIK3C2AO00443 1686 aa11.46□□□□□ -0.57
VPS29-203ENST00000546588 PHRF1Q9P1Y6 1649 aaKnown RBP11.46□□□□□ -0.57
VPS29-203ENST00000546588 MYBBP1AQ9BQG0 1328 aaKnown RBP11.46□□□□□ -0.57
VPS29-203ENST00000546588 PPP1R18Q6NYC8 613 aa11.46□□□□□ -0.57
VPS29-203ENST00000546588 NUDT18Q6ZVK8 323 aa11.46□□□□□ -0.57
VPS29-203ENST00000546588 CDK19Q9BWU1 502 aa11.46□□□□□ -0.57
VPS29-203ENST00000546588 NPDC1Q9NQX5 325 aaPredicted RBP11.46□□□□□ -0.57
VPS29-203ENST00000546588 PRR36Q9H6K5 1346 aa11.45□□□□□ -0.58
VPS29-203ENST00000546588 MAP2P11137 1827 aaKnown RBP11.45□□□□□ -0.58
VPS29-203ENST00000546588 APLP1P51693 650 aa11.45□□□□□ -0.58
VPS29-203ENST00000546588 ZNF516Q92618 1163 aa11.45□□□□□ -0.58
VPS29-203ENST00000546588 CARD14Q9BXL6 1004 aa11.45□□□□□ -0.58
VPS29-203ENST00000546588 SMG6Q86US8 1419 aaKnown RBP11.44□□□□□ -0.58
VPS29-203ENST00000546588 GFRA3O60609 400 aa11.44□□□□□ -0.58
VPS29-203ENST00000546588 PRKD2Q9BZL6 878 aa11.44□□□□□ -0.58
VPS29-203ENST00000546588 V9GY48 417 aaPredicted RBP11.44□□□□□ -0.58
VPS29-203ENST00000546588 MST1RQ04912 1400 aa11.43□□□□□ -0.58
VPS29-203ENST00000546588 MS4A1P11836 297 aa11.43□□□□□ -0.58
VPS29-203ENST00000546588 PCMTD1Q96MG8 357 aaPredicted RBP11.43□□□□□ -0.58
VPS29-203ENST00000546588 SLC12A5Q9H2X9 1139 aa11.43□□□□□ -0.58
VPS29-203ENST00000546588 CRYBG1Q9Y4K1 1723 aa11.43□□□□□ -0.58
VPS29-203ENST00000546588 USP6P35125 1406 aa11.43□□□□□ -0.58
VPS29-203ENST00000546588 ALS2Q96Q42 1657 aa11.43□□□□□ -0.58
VPS29-203ENST00000546588 SRPK2P78362 688 aaKnown RBP11.42□□□□□ -0.58
VPS29-203ENST00000546588 FLIIQ13045 1269 aa11.42□□□□□ -0.58
VPS29-203ENST00000546588 KNSTRNQ9Y448 316 aa11.42□□□□□ -0.58
VPS29-203ENST00000546588 CGNL1Q0VF96 1302 aa11.41□□□□□ -0.58
VPS29-203ENST00000546588 SAFB2Q14151 953 aaKnown RBP eCLIP11.41□□□□□ -0.58
VPS29-203ENST00000546588 TRAF7Q6Q0C0 670 aa11.41□□□□□ -0.58
VPS29-203ENST00000546588 NLRP13Q86W25 1043 aa11.41□□□□□ -0.58
VPS29-203ENST00000546588 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.41□□□□□ -0.58
VPS29-203ENST00000546588 TERF2IPQ9NYB0 399 aa11.41□□□□□ -0.58
VPS29-203ENST00000546588 OVOS2A0A0J9YW53 1432 aa11.41□□□□□ -0.58
VPS29-203ENST00000546588 OVOS2Q6IE36 1432 aa11.41□□□□□ -0.58
VPS29-203ENST00000546588 COL3A1P02461 1466 aaPredicted RBP11.4□□□□□ -0.58
VPS29-203ENST00000546588 NHSL1Q5SYE7 1610 aa11.4□□□□□ -0.58
VPS29-203ENST00000546588 NRG2O14511 850 aaPredicted RBP11.4□□□□□ -0.58
VPS29-203ENST00000546588 NUDT16Q96DE0 195 aaKnown RBP11.4□□□□□ -0.58
VPS29-203ENST00000546588 POLR3GLQ9BT43 218 aa11.4□□□□□ -0.58
VPS29-203ENST00000546588 REPIN1Q9BWE0 567 aaKnown RBP11.4□□□□□ -0.58
VPS29-203ENST00000546588 LTBP4Q8N2S1 1624 aa11.39□□□□□ -0.59
VPS29-203ENST00000546588 MDM2Q00987 491 aaPredicted RBP11.39□□□□□ -0.59
VPS29-203ENST00000546588 RGPD1P0DJD0 1748 aa11.38□□□□□ -0.59
VPS29-203ENST00000546588 BLMP54132 1417 aaPredicted RBP11.38□□□□□ -0.59
VPS29-203ENST00000546588 PADI6Q6TGC4 694 aa11.38□□□□□ -0.59
VPS29-203ENST00000546588 GOPCQ9HD26 462 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms