RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 DIP2BQ9P265 1576 aa10.67□□□□□ -0.7
TDP1-204ENST00000545686 BRD1O95696 1058 aa10.67□□□□□ -0.7
TDP1-204ENST00000545686 TMX3Q96JJ7 454 aa10.67□□□□□ -0.7
TDP1-204ENST00000545686 ESYT1Q9BSJ8 1104 aa10.67□□□□□ -0.7
TDP1-204ENST00000545686 TMEM63CQ9P1W3 806 aa10.67□□□□□ -0.7
TDP1-204ENST00000545686 CCDC39Q9UFE4 941 aa10.67□□□□□ -0.7
TDP1-204ENST00000545686 AOX1Q06278 1338 aa10.67□□□□□ -0.7
TDP1-204ENST00000545686 KRT24Q2M2I5 525 aa10.66□□□□□ -0.7
TDP1-204ENST00000545686 SYAP1Q96A49 352 aaPredicted RBP10.66□□□□□ -0.7
TDP1-204ENST00000545686 CRYBG1Q9Y4K1 1723 aa10.66□□□□□ -0.7
TDP1-204ENST00000545686 USP6P35125 1406 aa10.66□□□□□ -0.7
TDP1-204ENST00000545686 GNAI2P04899 355 aa10.66□□□□□ -0.7
TDP1-204ENST00000545686 SLC4A2P04920 1241 aa10.66□□□□□ -0.7
TDP1-204ENST00000545686 MAP7D2Q96T17 732 aa10.66□□□□□ -0.7
TDP1-204ENST00000545686 SRCIN1Q9C0H9 1055 aa10.66□□□□□ -0.7
TDP1-204ENST00000545686 SOS1Q07889 1333 aaPredicted RBP10.66□□□□□ -0.7
TDP1-204ENST00000545686 PRR36Q9H6K5 1346 aa10.66□□□□□ -0.7
TDP1-204ENST00000545686 TSPOAP1O95153 1857 aa10.66□□□□□ -0.7
TDP1-204ENST00000545686 USP54Q70EL1 1684 aa10.65□□□□□ -0.7
TDP1-204ENST00000545686 NEK4P51957 841 aa10.65□□□□□ -0.7
TDP1-204ENST00000545686 MCM10Q7L590 875 aa10.65□□□□□ -0.7
TDP1-204ENST00000545686 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.65□□□□□ -0.7
TDP1-204ENST00000545686 RBM27Q9P2N5 1060 aaKnown RBP10.65□□□□□ -0.7
TDP1-204ENST00000545686 KDRP35968 1356 aa10.65□□□□□ -0.7
TDP1-204ENST00000545686 PHF14O94880 888 aa10.65□□□□□ -0.7
TDP1-204ENST00000545686 LRRCC1Q9C099 1032 aa10.65□□□□□ -0.7
TDP1-204ENST00000545686 STAP2Q9UGK3 403 aa10.65□□□□□ -0.7
TDP1-204ENST00000545686 SYCE3A1L190 88 aa10.64□□□□□ -0.71
TDP1-204ENST00000545686 APBB1O00213 710 aa10.64□□□□□ -0.71
TDP1-204ENST00000545686 GNAI3P08754 354 aa10.64□□□□□ -0.71
TDP1-204ENST00000545686 MX1P20591 662 aa10.64□□□□□ -0.71
TDP1-204ENST00000545686 HDGFP51858 240 aaKnown RBP10.64□□□□□ -0.71
TDP1-204ENST00000545686 TXNDC2Q86VQ3 553 aa10.64□□□□□ -0.71
TDP1-204ENST00000545686 KLHL34Q8N239 644 aa10.64□□□□□ -0.71
TDP1-204ENST00000545686 CHD2O14647 1828 aaKnown RBP10.64□□□□□ -0.71
TDP1-204ENST00000545686 PLEKHG3A1L390 1219 aa10.63□□□□□ -0.71
TDP1-204ENST00000545686 CHMLP26374 656 aa10.63□□□□□ -0.71
TDP1-204ENST00000545686 TSPY26PQ9H489 355 aa10.63□□□□□ -0.71
TDP1-204ENST00000545686 TSPYL4Q9UJ04 414 aa10.63□□□□□ -0.71
TDP1-204ENST00000545686 SBNO1A3KN83 1393 aa10.62□□□□□ -0.71
TDP1-204ENST00000545686 FLT4P35916 1363 aa10.62□□□□□ -0.71
TDP1-204ENST00000545686 NCKAP5LQ9HCH0 1330 aa10.62□□□□□ -0.71
TDP1-204ENST00000545686 HTATSF1O43719 755 aaKnown RBP10.62□□□□□ -0.71
TDP1-204ENST00000545686 MTERF4Q7Z6M4 381 aaKnown RBP10.62□□□□□ -0.71
TDP1-204ENST00000545686 FAM184AQ8NB25 1140 aa10.62□□□□□ -0.71
TDP1-204ENST00000545686 RTF1Q92541 710 aaKnown RBP10.62□□□□□ -0.71
TDP1-204ENST00000545686 STK31Q9BXU1 1019 aa10.62□□□□□ -0.71
TDP1-204ENST00000545686 TTC21AQ8NDW8 1320 aa10.62□□□□□ -0.71
TDP1-204ENST00000545686 WDR33Q9C0J8 1336 aaKnown RBP10.62□□□□□ -0.71
TDP1-204ENST00000545686 ATP8B2P98198 1209 aa10.62□□□□□ -0.71
TDP1-204ENST00000545686 G2E3Q7L622 706 aa10.62□□□□□ -0.71
TDP1-204ENST00000545686 TMEM87AQ8NBN3 555 aa10.62□□□□□ -0.71
TDP1-204ENST00000545686 NSFL1CQ9UNZ2 370 aaKnown RBP10.62□□□□□ -0.71
TDP1-204ENST00000545686 PIK3C2AO00443 1686 aa10.62□□□□□ -0.71
TDP1-204ENST00000545686 SLC4A10Q6U841 1118 aa10.61□□□□□ -0.71
TDP1-204ENST00000545686 VSIG10Q8N0Z9 540 aa10.61□□□□□ -0.71
TDP1-204ENST00000545686 EXOC6BQ9Y2D4 811 aa10.61□□□□□ -0.71
TDP1-204ENST00000545686 PTPRUQ92729 1446 aa10.61□□□□□ -0.71
TDP1-204ENST00000545686 ROBO2Q9HCK4 1378 aa10.61□□□□□ -0.71
TDP1-204ENST00000545686 ACEP12821 1306 aa10.61□□□□□ -0.71
TDP1-204ENST00000545686 MAP3K19Q56UN5 1328 aa10.61□□□□□ -0.71
TDP1-204ENST00000545686 MARF1Q9Y4F3 1742 aaKnown RBP10.61□□□□□ -0.71
TDP1-204ENST00000545686 DYNC1I1O14576 645 aa10.61□□□□□ -0.71
TDP1-204ENST00000545686 PLEKHG5O94827 1062 aa10.61□□□□□ -0.71
TDP1-204ENST00000545686 UVSSAQ2YD98 709 aa10.61□□□□□ -0.71
TDP1-204ENST00000545686 HSP90AB2PQ58FF8 381 aa10.61□□□□□ -0.71
TDP1-204ENST00000545686 PALD1Q9ULE6 856 aa10.61□□□□□ -0.71
TDP1-204ENST00000545686 R3HCC1Q9Y3T6 440 aaKnown RBP10.61□□□□□ -0.71
TDP1-204ENST00000545686 RGPD8O14715 1765 aaPredicted RBP10.61□□□□□ -0.71
TDP1-204ENST00000545686 CEP170BQ9Y4F5 1589 aaPredicted RBP10.61□□□□□ -0.71
TDP1-204ENST00000545686 F6X3S4 739 aa10.6□□□□□ -0.71
TDP1-204ENST00000545686 CCDC30Q5VVM6 783 aa10.6□□□□□ -0.71
TDP1-204ENST00000545686 ANO2Q9NQ90 1003 aa10.6□□□□□ -0.71
TDP1-204ENST00000545686 ADAMTS13Q76LX8 1427 aa10.6□□□□□ -0.71
TDP1-204ENST00000545686 IGSF1Q8N6C5 1336 aa10.6□□□□□ -0.71
TDP1-204ENST00000545686 XPCQ01831 940 aaPredicted RBP10.6□□□□□ -0.71
TDP1-204ENST00000545686 FLIIQ13045 1269 aa10.6□□□□□ -0.71
TDP1-204ENST00000545686 MTHFSDQ2M296 383 aaKnown RBP10.6□□□□□ -0.71
TDP1-204ENST00000545686 SASS6Q6UVJ0 657 aa10.6□□□□□ -0.71
TDP1-204ENST00000545686 BABAM1Q9NWV8 329 aa10.6□□□□□ -0.71
TDP1-204ENST00000545686 HSPA4P34932 840 aa10.59□□□□□ -0.71
TDP1-204ENST00000545686 RPAP1Q9BWH6 1393 aaPredicted RBP10.59□□□□□ -0.71
TDP1-204ENST00000545686 TMEM2Q9UHN6 1383 aa10.59□□□□□ -0.71
TDP1-204ENST00000545686 KDM3BQ7LBC6 1761 aa10.59□□□□□ -0.71
TDP1-204ENST00000545686 UQCRHLA0A096LP55 91 aa10.59□□□□□ -0.71
TDP1-204ENST00000545686 UQCRHP07919 91 aa10.59□□□□□ -0.71
TDP1-204ENST00000545686 PNMA6EA0A0J9YXQ4 647 aa10.58□□□□□ -0.72
TDP1-204ENST00000545686 TRIM6-TRIM34B2RNG4 842 aa10.58□□□□□ -0.72
TDP1-204ENST00000545686 RAB11FIP3O75154 756 aa10.58□□□□□ -0.72
TDP1-204ENST00000545686 LETM1O95202 739 aaPredicted RBP10.58□□□□□ -0.72
TDP1-204ENST00000545686 KIAA2012Q0VF49 1180 aa10.58□□□□□ -0.72
TDP1-204ENST00000545686 PKNOX2Q96KN3 472 aa10.58□□□□□ -0.72
TDP1-204ENST00000545686 ZMYND15Q9H091 742 aa10.58□□□□□ -0.72
TDP1-204ENST00000545686 FKBP5Q13451 457 aaPredicted RBP10.58□□□□□ -0.72
TDP1-204ENST00000545686 RILPL2Q969X0 211 aa10.58□□□□□ -0.72
TDP1-204ENST00000545686 CHAMP1Q96JM3 812 aa10.58□□□□□ -0.72
TDP1-204ENST00000545686 RAD50Q92878 1312 aa10.57□□□□□ -0.72
TDP1-204ENST00000545686 NWD1Q149M9 1564 aa10.57□□□□□ -0.72
TDP1-204ENST00000545686 TNRQ92752 1358 aa10.57□□□□□ -0.72
TDP1-204ENST00000545686 PLEKHG1Q9ULL1 1385 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms