RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 TMX3Q96JJ7 454 aa18.42■□□□□ 0.54
USP28-214ENST00000545540 LRRCC1Q9C099 1032 aa18.42■□□□□ 0.54
USP28-214ENST00000545540 CLCN1P35523 988 aa18.41■□□□□ 0.54
USP28-214ENST00000545540 ZSCAN23Q3MJ62 389 aa18.41■□□□□ 0.54
USP28-214ENST00000545540 ABTB2Q8N961 1025 aa18.41■□□□□ 0.54
USP28-214ENST00000545540 TMEM2Q9UHN6 1383 aa18.41■□□□□ 0.54
USP28-214ENST00000545540 KCNQ3O43525 872 aa18.41■□□□□ 0.54
USP28-214ENST00000545540 MX1P20591 662 aa18.41■□□□□ 0.54
USP28-214ENST00000545540 RBSNQ9H1K0 784 aa18.41■□□□□ 0.54
USP28-214ENST00000545540 SYCE3A1L190 88 aa18.4■□□□□ 0.54
USP28-214ENST00000545540 KLHL40Q2TBA0 621 aa18.4■□□□□ 0.54
USP28-214ENST00000545540 NRXN3Q9Y4C0 1643 aa18.4■□□□□ 0.54
USP28-214ENST00000545540 XPCQ01831 940 aaPredicted RBP18.4■□□□□ 0.54
USP28-214ENST00000545540 SETD1BQ9UPS6 1966 aaKnown RBP18.39■□□□□ 0.54
USP28-214ENST00000545540 PLEKHG3A1L390 1219 aa18.39■□□□□ 0.54
USP28-214ENST00000545540 CPA1P15085 419 aa18.39■□□□□ 0.54
USP28-214ENST00000545540 USP6P35125 1406 aa18.39■□□□□ 0.53
USP28-214ENST00000545540 SURF6O75683 361 aaKnown RBP18.39■□□□□ 0.53
USP28-214ENST00000545540 CCT4P50991 539 aaKnown RBP18.39■□□□□ 0.53
USP28-214ENST00000545540 LGR6Q9HBX8 967 aa18.39■□□□□ 0.53
USP28-214ENST00000545540 NUCB2P80303 420 aa18.38■□□□□ 0.53
USP28-214ENST00000545540 LMOD2Q6P5Q4 547 aa18.38■□□□□ 0.53
USP28-214ENST00000545540 ESYT1Q9BSJ8 1104 aa18.38■□□□□ 0.53
USP28-214ENST00000545540 GNAT3A8MTJ3 354 aa18.37■□□□□ 0.53
USP28-214ENST00000545540 HDGFL1Q5TGJ6 251 aa18.37■□□□□ 0.53
USP28-214ENST00000545540 USP44Q9H0E7 712 aa18.37■□□□□ 0.53
USP28-214ENST00000545540 HAP1P54257 671 aaPredicted RBP18.37■□□□□ 0.53
USP28-214ENST00000545540 TMEM63CQ9P1W3 806 aa18.37■□□□□ 0.53
USP28-214ENST00000545540 NBPF7P0C2Y1 421 aaPredicted RBP18.37■□□□□ 0.53
USP28-214ENST00000545540 PTPRUQ92729 1446 aa18.36■□□□□ 0.53
USP28-214ENST00000545540 KIAA0232Q92628 1395 aa18.36■□□□□ 0.53
USP28-214ENST00000545540 UBTFL1P0CB47 393 aaPredicted RBP18.36■□□□□ 0.53
USP28-214ENST00000545540 CCDC30Q5VVM6 783 aa18.36■□□□□ 0.53
USP28-214ENST00000545540 PPP6R1Q9UPN7 881 aa18.36■□□□□ 0.53
USP28-214ENST00000545540 ADAMTS13Q76LX8 1427 aa18.36■□□□□ 0.53
USP28-214ENST00000545540 CHMLP26374 656 aa18.36■□□□□ 0.53
USP28-214ENST00000545540 EID1Q9Y6B2 187 aa18.36■□□□□ 0.53
USP28-214ENST00000545540 OVOS2A0A0J9YW53 1432 aa18.36■□□□□ 0.53
USP28-214ENST00000545540 OVOS2Q6IE36 1432 aa18.36■□□□□ 0.53
USP28-214ENST00000545540 CEP170BQ9Y4F5 1589 aaPredicted RBP18.36■□□□□ 0.53
USP28-214ENST00000545540 CYP2E1P05181 493 aaPredicted RBP18.35■□□□□ 0.53
USP28-214ENST00000545540 PPP1R42Q7Z4L9 355 aa18.35■□□□□ 0.53
USP28-214ENST00000545540 LRRC59Q96AG4 307 aaKnown RBP18.35■□□□□ 0.53
USP28-214ENST00000545540 SETD1AO15047 1707 aaKnown RBP18.35■□□□□ 0.53
USP28-214ENST00000545540 SPATA31D1Q6ZQQ2 1576 aa18.35■□□□□ 0.53
USP28-214ENST00000545540 SPG7Q9UQ90 795 aa18.35■□□□□ 0.53
USP28-214ENST00000545540 KCNA6P17658 529 aa18.35■□□□□ 0.53
USP28-214ENST00000545540 PEAK1Q9H792 1746 aa18.34■□□□□ 0.53
USP28-214ENST00000545540 HOXC9P31274 260 aa18.34■□□□□ 0.53
USP28-214ENST00000545540 ANP32BQ92688 251 aaKnown RBP18.34■□□□□ 0.53
USP28-214ENST00000545540 SRGAP3O43295 1099 aa18.34■□□□□ 0.53
USP28-214ENST00000545540 ATP8B2P98198 1209 aa18.34■□□□□ 0.53
USP28-214ENST00000545540 TAF7Q15545 349 aaPredicted RBP18.33■□□□□ 0.52
USP28-214ENST00000545540 MPRIPQ6WCQ1 1025 aa18.33■□□□□ 0.52
USP28-214ENST00000545540 GADD45BO75293 160 aaPredicted RBP18.33■□□□□ 0.52
USP28-214ENST00000545540 CHPF2Q9P2E5 772 aa18.33■□□□□ 0.52
USP28-214ENST00000545540 FLT4P35916 1363 aa18.33■□□□□ 0.52
USP28-214ENST00000545540 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.33■□□□□ 0.52
USP28-214ENST00000545540 CWC27Q6UX04 472 aaKnown RBP18.32■□□□□ 0.52
USP28-214ENST00000545540 PRAMEF22A3QJZ6 481 aa18.32■□□□□ 0.52
USP28-214ENST00000545540 PI4KAP2A4QPH2 592 aa18.32■□□□□ 0.52
USP28-214ENST00000545540 PI4KAP1Q8N8J0 262 aa18.32■□□□□ 0.52
USP28-214ENST00000545540 KIF24Q5T7B8 1368 aa18.32■□□□□ 0.52
USP28-214ENST00000545540 GNAI3P08754 354 aa18.32■□□□□ 0.52
USP28-214ENST00000545540 OS9Q13438 667 aaPredicted RBP18.31■□□□□ 0.52
USP28-214ENST00000545540 ARID3AQ99856 593 aa18.31■□□□□ 0.52
USP28-214ENST00000545540 SOS1Q07889 1333 aaPredicted RBP18.3■□□□□ 0.52
USP28-214ENST00000545540 PA2G4Q9UQ80 394 aaKnown RBP18.3■□□□□ 0.52
USP28-214ENST00000545540 C3P01024 1663 aa18.3■□□□□ 0.52
USP28-214ENST00000545540 IGSF1Q8N6C5 1336 aa18.3■□□□□ 0.52
USP28-214ENST00000545540 NBPF6Q5VWK0 638 aa18.29■□□□□ 0.52
USP28-214ENST00000545540 SIRT1Q96EB6 747 aa18.29■□□□□ 0.52
USP28-214ENST00000545540 NBPF4Q96M43 638 aa18.29■□□□□ 0.52
USP28-214ENST00000545540 DIP2BQ9P265 1576 aa18.29■□□□□ 0.52
USP28-214ENST00000545540 CWC22Q9HCG8 908 aaKnown RBP18.29■□□□□ 0.52
USP28-214ENST00000545540 SBNO1A3KN83 1393 aa18.28■□□□□ 0.52
USP28-214ENST00000545540 RASEFQ8IZ41 740 aa18.28■□□□□ 0.52
USP28-214ENST00000545540 OSBPL3Q9H4L5 887 aa18.28■□□□□ 0.52
USP28-214ENST00000545540 CCDC173Q0VFZ6 552 aa18.28■□□□□ 0.52
USP28-214ENST00000545540 AIMP1Q12904 312 aaKnown RBP18.28■□□□□ 0.52
USP28-214ENST00000545540 SALL3Q9BXA9 1300 aa18.28■□□□□ 0.52
USP28-214ENST00000545540 MON2Q7Z3U7 1717 aa18.28■□□□□ 0.52
USP28-214ENST00000545540 JARID2Q92833 1246 aaPredicted RBP18.27■□□□□ 0.52
USP28-214ENST00000545540 CLEC17AQ6ZS10 378 aa18.27■□□□□ 0.52
USP28-214ENST00000545540 COL9A3Q14050 684 aaPredicted RBP18.27■□□□□ 0.51
USP28-214ENST00000545540 RHPN1Q8TCX5 695 aa18.27■□□□□ 0.51
USP28-214ENST00000545540 SRCIN1Q9C0H9 1055 aa18.27■□□□□ 0.51
USP28-214ENST00000545540 ARHGEF10O15013 1369 aa18.26■□□□□ 0.51
USP28-214ENST00000545540 USP31Q70CQ4 1352 aa18.26■□□□□ 0.51
USP28-214ENST00000545540 IBTKQ9P2D0 1353 aaPredicted RBP18.26■□□□□ 0.51
USP28-214ENST00000545540 MCCP23508 829 aa18.26■□□□□ 0.51
USP28-214ENST00000545540 MSNP26038 577 aaKnown RBP18.26■□□□□ 0.51
USP28-214ENST00000545540 ITSN1Q15811 1721 aa18.26■□□□□ 0.51
USP28-214ENST00000545540 PROSER3Q2NL68 480 aa18.26■□□□□ 0.51
USP28-214ENST00000545540 CWF19L2Q2TBE0 894 aaKnown RBP18.26■□□□□ 0.51
USP28-214ENST00000545540 TECPR2O15040 1411 aa18.26■□□□□ 0.51
USP28-214ENST00000545540 RBM10P98175 930 aaKnown RBP18.26■□□□□ 0.51
USP28-214ENST00000545540 KIAA1211Q6ZU35 1233 aa18.26■□□□□ 0.51
USP28-214ENST00000545540 ISY1Q9ULR0 285 aaKnown RBP18.26■□□□□ 0.51
USP28-214ENST00000545540 PIP4K2AP48426 406 aaPredicted RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms