RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 DAAM2Q86T65 1068 aa12.09□□□□□ -0.47
PCDH9-204ENST00000544246 RAI14Q9P0K7 980 aa12.09□□□□□ -0.47
PCDH9-204ENST00000544246 FGFR1OPO95684 399 aaKnown RBP12.09□□□□□ -0.47
PCDH9-204ENST00000544246 CCDC83Q8IWF9 413 aa12.09□□□□□ -0.47
PCDH9-204ENST00000544246 SIL1Q9H173 461 aa12.09□□□□□ -0.47
PCDH9-204ENST00000544246 SFPQP23246 707 aaKnown RBP eCLIP12.09□□□□□ -0.47
PCDH9-204ENST00000544246 PAFAH1B1P43034 410 aa12.09□□□□□ -0.47
PCDH9-204ENST00000544246 PDIA4P13667 645 aaKnown RBP12.09□□□□□ -0.47
PCDH9-204ENST00000544246 CCT4P50991 539 aaKnown RBP12.09□□□□□ -0.47
PCDH9-204ENST00000544246 KRT32Q14532 448 aa12.09□□□□□ -0.47
PCDH9-204ENST00000544246 NUTM2GQ5VZR2 741 aa12.09□□□□□ -0.47
PCDH9-204ENST00000544246 SF3B2Q13435 895 aaKnown RBP12.09□□□□□ -0.47
PCDH9-204ENST00000544246 SEC63Q9UGP8 760 aaKnown RBP12.09□□□□□ -0.47
PCDH9-204ENST00000544246 AKNAQ7Z591 1439 aa12.09□□□□□ -0.47
PCDH9-204ENST00000544246 DHX57Q6P158 1386 aaKnown RBP12.08□□□□□ -0.47
PCDH9-204ENST00000544246 ZWINTO95229 277 aa12.08□□□□□ -0.47
PCDH9-204ENST00000544246 MPHOSPH8Q99549 860 aa12.08□□□□□ -0.47
PCDH9-204ENST00000544246 SRCIN1Q9C0H9 1055 aa12.08□□□□□ -0.47
PCDH9-204ENST00000544246 NAA15Q9BXJ9 866 aaKnown RBP12.08□□□□□ -0.48
PCDH9-204ENST00000544246 EIF4G3O43432 1585 aaKnown RBP12.08□□□□□ -0.48
PCDH9-204ENST00000544246 FSD2A1L4K1 749 aa12.08□□□□□ -0.48
PCDH9-204ENST00000544246 PIBF1Q8WXW3 757 aa12.08□□□□□ -0.48
PCDH9-204ENST00000544246 JAKMIP1Q96N16 626 aaKnown RBP12.08□□□□□ -0.48
PCDH9-204ENST00000544246 MACROD2A1Z1Q3 448 aa12.08□□□□□ -0.48
PCDH9-204ENST00000544246 SPDYE4A6NLX3 237 aa12.08□□□□□ -0.48
PCDH9-204ENST00000544246 CBX1P83916 185 aa12.08□□□□□ -0.48
PCDH9-204ENST00000544246 FKBP4Q02790 459 aaKnown RBP eCLIP12.08□□□□□ -0.48
PCDH9-204ENST00000544246 KIF18AQ8NI77 898 aa12.08□□□□□ -0.48
PCDH9-204ENST00000544246 PSMD1Q99460 953 aa12.08□□□□□ -0.48
PCDH9-204ENST00000544246 SSX2IPQ9Y2D8 614 aa12.08□□□□□ -0.48
PCDH9-204ENST00000544246 TWISTNBQ3B726 338 aaPredicted RBP12.08□□□□□ -0.48
PCDH9-204ENST00000544246 IPO4Q8TEX9 1081 aaKnown RBP12.08□□□□□ -0.48
PCDH9-204ENST00000544246 URI1O94763 535 aaPredicted RBP12.07□□□□□ -0.48
PCDH9-204ENST00000544246 SPECC1Q5M775 1068 aa12.07□□□□□ -0.48
PCDH9-204ENST00000544246 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.07□□□□□ -0.48
PCDH9-204ENST00000544246 GGNBP2Q9H3C7 697 aa12.07□□□□□ -0.48
PCDH9-204ENST00000544246 SMARCC1Q92922 1105 aaPredicted RBP12.07□□□□□ -0.48
PCDH9-204ENST00000544246 ALS2CR12Q96Q35 445 aa12.07□□□□□ -0.48
PCDH9-204ENST00000544246 PLEKHH2Q8IVE3 1493 aa12.07□□□□□ -0.48
PCDH9-204ENST00000544246 TMCO5BA8MYB1 307 aa12.07□□□□□ -0.48
PCDH9-204ENST00000544246 CTR9Q6PD62 1173 aa12.07□□□□□ -0.48
PCDH9-204ENST00000544246 UBA5Q9GZZ9 404 aa12.07□□□□□ -0.48
PCDH9-204ENST00000544246 NOB1Q9ULX3 412 aaKnown RBP12.07□□□□□ -0.48
PCDH9-204ENST00000544246 CNTLNQ9NXG0 1405 aa12.06□□□□□ -0.48
PCDH9-204ENST00000544246 GPRASP1Q5JY77 1395 aa12.06□□□□□ -0.48
PCDH9-204ENST00000544246 AACSQ86V21 672 aa12.06□□□□□ -0.48
PCDH9-204ENST00000544246 NUTM2BA6NNL0 878 aaPredicted RBP12.06□□□□□ -0.48
PCDH9-204ENST00000544246 NUTM2EB1AL46 878 aaPredicted RBP12.06□□□□□ -0.48
PCDH9-204ENST00000544246 POLR3GO15318 223 aaPredicted RBP12.06□□□□□ -0.48
PCDH9-204ENST00000544246 TOP1P11387 765 aaKnown RBP12.06□□□□□ -0.48
PCDH9-204ENST00000544246 NUTM2AQ8IVF1 878 aaPredicted RBP12.06□□□□□ -0.48
PCDH9-204ENST00000544246 TMEM87AQ8NBN3 555 aa12.06□□□□□ -0.48
PCDH9-204ENST00000544246 IL27Q8NEV9 243 aa12.06□□□□□ -0.48
PCDH9-204ENST00000544246 SREK1Q8WXA9 508 aaKnown RBP12.06□□□□□ -0.48
PCDH9-204ENST00000544246 FERMT1Q9BQL6 677 aa12.06□□□□□ -0.48
PCDH9-204ENST00000544246 YEATS4O95619 227 aa12.06□□□□□ -0.48
PCDH9-204ENST00000544246 CAMK4Q16566 473 aa12.06□□□□□ -0.48
PCDH9-204ENST00000544246 SERPINA10Q9UK55 444 aa12.06□□□□□ -0.48
PCDH9-204ENST00000544246 DNA2P51530 1060 aa12.06□□□□□ -0.48
PCDH9-204ENST00000544246 NLRP6P59044 892 aa12.06□□□□□ -0.48
PCDH9-204ENST00000544246 PHAXQ9H814 394 aaKnown RBP12.06□□□□□ -0.48
PCDH9-204ENST00000544246 ANO10Q9NW15 660 aa12.06□□□□□ -0.48
PCDH9-204ENST00000544246 ASXL2Q76L83 1435 aa12.06□□□□□ -0.48
PCDH9-204ENST00000544246 NUP88Q99567 741 aaPredicted RBP12.06□□□□□ -0.48
PCDH9-204ENST00000544246 PRDM10Q9NQV6 1147 aa12.06□□□□□ -0.48
PCDH9-204ENST00000544246 ESPNB1AK53 854 aa12.05□□□□□ -0.48
PCDH9-204ENST00000544246 TATP17735 454 aaPredicted RBP12.05□□□□□ -0.48
PCDH9-204ENST00000544246 CABP4P57796 275 aa12.05□□□□□ -0.48
PCDH9-204ENST00000544246 PPP1R14CQ8TAE6 165 aa12.05□□□□□ -0.48
PCDH9-204ENST00000544246 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.05□□□□□ -0.48
PCDH9-204ENST00000544246 V9GYY5 206 aaPredicted RBP12.05□□□□□ -0.48
PCDH9-204ENST00000544246 KIF20AO95235 890 aa12.05□□□□□ -0.48
PCDH9-204ENST00000544246 HLTFQ14527 1009 aaKnown RBP eCLIP12.05□□□□□ -0.48
PCDH9-204ENST00000544246 MAATS1Q7Z4T9 603 aa12.05□□□□□ -0.48
PCDH9-204ENST00000544246 RAB3IL1Q8TBN0 382 aa12.05□□□□□ -0.48
PCDH9-204ENST00000544246 PNISRQ8TF01 805 aaKnown RBP12.05□□□□□ -0.48
PCDH9-204ENST00000544246 TIGD1Q96MW7 591 aa12.05□□□□□ -0.48
PCDH9-204ENST00000544246 ZNF287Q9HBT7 754 aa12.05□□□□□ -0.48
PCDH9-204ENST00000544246 TMOD2Q9NZR1 351 aa12.05□□□□□ -0.48
PCDH9-204ENST00000544246 TNNT1P13805 278 aa12.05□□□□□ -0.48
PCDH9-204ENST00000544246 CEP112Q8N8E3 955 aa12.05□□□□□ -0.48
PCDH9-204ENST00000544246 FBF1Q8TES7 1133 aa12.05□□□□□ -0.48
PCDH9-204ENST00000544246 DENND4BO75064 1496 aaPredicted RBP12.04□□□□□ -0.48
PCDH9-204ENST00000544246 ZNF644Q9H582 1327 aaPredicted RBP12.04□□□□□ -0.48
PCDH9-204ENST00000544246 EXOSC9Q06265 439 aaKnown RBP12.04□□□□□ -0.48
PCDH9-204ENST00000544246 TDRD12Q587J7 1177 aaKnown RBP12.04□□□□□ -0.48
PCDH9-204ENST00000544246 DRC1Q96MC2 740 aa12.04□□□□□ -0.48
PCDH9-204ENST00000544246 CIZ1Q9ULV3 898 aaPredicted RBP12.04□□□□□ -0.48
PCDH9-204ENST00000544246 MYOM3Q5VTT5 1437 aa12.04□□□□□ -0.48
PCDH9-204ENST00000544246 CHMP4BP1P59074 171 aa12.04□□□□□ -0.48
PCDH9-204ENST00000544246 ZSCAN30Q86W11 494 aa12.04□□□□□ -0.48
PCDH9-204ENST00000544246 SLC4A2P04920 1241 aa12.04□□□□□ -0.48
PCDH9-204ENST00000544246 BBXQ8WY36 941 aaPredicted RBP12.04□□□□□ -0.48
PCDH9-204ENST00000544246 DDX12PQ92771 950 aa12.04□□□□□ -0.48
PCDH9-204ENST00000544246 RBM25P49756 843 aaKnown RBP12.04□□□□□ -0.48
PCDH9-204ENST00000544246 IKBKGQ9Y6K9 419 aa12.04□□□□□ -0.48
PCDH9-204ENST00000544246 LMAN1P49257 510 aa12.04□□□□□ -0.48
PCDH9-204ENST00000544246 LRP2BPQ9P2M1 347 aa12.04□□□□□ -0.48
PCDH9-204ENST00000544246 MRPS9P82933 396 aaKnown RBP12.03□□□□□ -0.48
PCDH9-204ENST00000544246 TMEM266Q2M3C6 531 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms