RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 CTAGE5O15320 804 aa9.22□□□□□ -0.93
VPS13D-211ENST00000543710 FCHSD2O94868 740 aa9.22□□□□□ -0.93
VPS13D-211ENST00000543710 EAPPQ56P03 285 aaPredicted RBP9.22□□□□□ -0.93
VPS13D-211ENST00000543710 CFAP45Q9UL16 551 aa9.22□□□□□ -0.93
VPS13D-211ENST00000543710 ABT1Q9ULW3 272 aaKnown RBP9.22□□□□□ -0.93
VPS13D-211ENST00000543710 MVPQ14764 893 aaKnown RBP9.22□□□□□ -0.93
VPS13D-211ENST00000543710 CCDC27Q2M243 656 aa9.22□□□□□ -0.93
VPS13D-211ENST00000543710 CCDC191Q8NCU4 936 aa9.22□□□□□ -0.93
VPS13D-211ENST00000543710 CDK19Q9BWU1 502 aa9.22□□□□□ -0.93
VPS13D-211ENST00000543710 ANKRD36BQ8N2N9 1353 aa9.21□□□□□ -0.93
VPS13D-211ENST00000543710 EIF2S2P20042 333 aaKnown RBP9.21□□□□□ -0.93
VPS13D-211ENST00000543710 RRP12Q5JTH9 1297 aaKnown RBP9.21□□□□□ -0.93
VPS13D-211ENST00000543710 PUS7Q96PZ0 661 aaKnown RBP9.21□□□□□ -0.93
VPS13D-211ENST00000543710 TMEM106CQ9BVX2 250 aa9.21□□□□□ -0.93
VPS13D-211ENST00000543710 GTPBP4Q9BZE4 634 aaKnown RBP9.21□□□□□ -0.93
VPS13D-211ENST00000543710 GOLGA6L7A0A1B0GV03 622 aa9.21□□□□□ -0.93
VPS13D-211ENST00000543710 KINO60870 393 aaKnown RBP9.21□□□□□ -0.93
VPS13D-211ENST00000543710 UVSSAQ2YD98 709 aa9.21□□□□□ -0.93
VPS13D-211ENST00000543710 KRT27Q7Z3Y8 459 aa9.21□□□□□ -0.93
VPS13D-211ENST00000543710 IFT57Q9NWB7 429 aa9.21□□□□□ -0.93
VPS13D-211ENST00000543710 SLAIN2Q9P270 581 aa9.21□□□□□ -0.93
VPS13D-211ENST00000543710 UHRF1BP1LA0JNW5 1464 aa9.21□□□□□ -0.93
VPS13D-211ENST00000543710 TNNI2P48788 182 aa9.21□□□□□ -0.94
VPS13D-211ENST00000543710 RRP9O43818 475 aaKnown RBP9.21□□□□□ -0.94
VPS13D-211ENST00000543710 TRAK2O60296 914 aa9.21□□□□□ -0.94
VPS13D-211ENST00000543710 HMGB1P09429 215 aaKnown RBP9.21□□□□□ -0.94
VPS13D-211ENST00000543710 YY1P25490 414 aa9.21□□□□□ -0.94
VPS13D-211ENST00000543710 EPS15P42566 896 aa9.21□□□□□ -0.94
VPS13D-211ENST00000543710 MTHFSP49914 203 aa9.21□□□□□ -0.94
VPS13D-211ENST00000543710 TUBB4BP68371 445 aa9.21□□□□□ -0.94
VPS13D-211ENST00000543710 PLXNC1O60486 1568 aa9.21□□□□□ -0.94
VPS13D-211ENST00000543710 FAM83GA6ND36 823 aa9.2□□□□□ -0.94
VPS13D-211ENST00000543710 BMS1Q14692 1282 aaKnown RBP9.2□□□□□ -0.94
VPS13D-211ENST00000543710 ZNF408Q9H9D4 720 aa9.2□□□□□ -0.94
VPS13D-211ENST00000543710 CYP46A1Q9Y6A2 500 aa9.2□□□□□ -0.94
VPS13D-211ENST00000543710 BCS1LQ9Y276 419 aa9.2□□□□□ -0.94
VPS13D-211ENST00000543710 ASXL1Q8IXJ9 1541 aa9.2□□□□□ -0.94
VPS13D-211ENST00000543710 KDM2BQ8NHM5 1336 aa9.2□□□□□ -0.94
VPS13D-211ENST00000543710 CCDC158Q5M9N0 1113 aa9.2□□□□□ -0.94
VPS13D-211ENST00000543710 NOL8Q76FK4 1167 aaKnown RBP9.2□□□□□ -0.94
VPS13D-211ENST00000543710 LRRCC1Q9C099 1032 aa9.2□□□□□ -0.94
VPS13D-211ENST00000543710 ZNF530Q6P9A1 599 aaPredicted RBP9.2□□□□□ -0.94
VPS13D-211ENST00000543710 CLASRPQ8N2M8 674 aaKnown RBP9.2□□□□□ -0.94
VPS13D-211ENST00000543710 PTPRCP08575 1304 aa9.2□□□□□ -0.94
VPS13D-211ENST00000543710 FKBP5Q13451 457 aaPredicted RBP9.2□□□□□ -0.94
VPS13D-211ENST00000543710 SH2B1Q9NRF2 756 aaPredicted RBP9.2□□□□□ -0.94
VPS13D-211ENST00000543710 ZMYM3Q14202 1370 aa9.2□□□□□ -0.94
VPS13D-211ENST00000543710 ADAMTS12P58397 1594 aa9.2□□□□□ -0.94
VPS13D-211ENST00000543710 DNMT1P26358 1616 aaKnown RBP9.19□□□□□ -0.94
VPS13D-211ENST00000543710 PBRM1Q86U86 1689 aa9.19□□□□□ -0.94
VPS13D-211ENST00000543710 GIGYF1O75420 1035 aaPredicted RBP9.19□□□□□ -0.94
VPS13D-211ENST00000543710 ZBTB24O43167 697 aaPredicted RBP9.19□□□□□ -0.94
VPS13D-211ENST00000543710 SMC2O95347 1197 aa9.19□□□□□ -0.94
VPS13D-211ENST00000543710 DDX46Q7L014 1031 aaKnown RBP9.19□□□□□ -0.94
VPS13D-211ENST00000543710 GOLGA6L9A6NEM1 432 aa9.19□□□□□ -0.94
VPS13D-211ENST00000543710 GOLGA6L10A6NI86 522 aa9.19□□□□□ -0.94
VPS13D-211ENST00000543710 C6orf229H3BNL8 230 aa9.19□□□□□ -0.94
VPS13D-211ENST00000543710 NACAP1Q9BZK3 213 aa9.19□□□□□ -0.94
VPS13D-211ENST00000543710 ZFYVE9O95405 1425 aa9.19□□□□□ -0.94
VPS13D-211ENST00000543710 SLC4A3P48751 1232 aa9.19□□□□□ -0.94
VPS13D-211ENST00000543710 BACH2Q9BYV9 841 aa9.19□□□□□ -0.94
VPS13D-211ENST00000543710 ZNF526Q8TF50 670 aaPredicted RBP9.18□□□□□ -0.94
VPS13D-211ENST00000543710 WDR62O43379 1518 aa9.18□□□□□ -0.94
VPS13D-211ENST00000543710 DESP17661 470 aa9.18□□□□□ -0.94
VPS13D-211ENST00000543710 ABCC5O15440 1437 aa9.18□□□□□ -0.94
VPS13D-211ENST00000543710 BRDTQ58F21 947 aaPredicted RBP9.18□□□□□ -0.94
VPS13D-211ENST00000543710 DDX12PQ92771 950 aa9.18□□□□□ -0.94
VPS13D-211ENST00000543710 H0YIN7 160 aa9.18□□□□□ -0.94
VPS13D-211ENST00000543710 KRT85P78386 507 aa9.18□□□□□ -0.94
VPS13D-211ENST00000543710 TTC39AQ5SRH9 613 aa9.18□□□□□ -0.94
VPS13D-211ENST00000543710 CNNM1Q9NRU3 951 aa9.18□□□□□ -0.94
VPS13D-211ENST00000543710 ANKIB1Q9P2G1 1089 aa9.18□□□□□ -0.94
VPS13D-211ENST00000543710 TTC21BQ7Z4L5 1316 aa9.18□□□□□ -0.94
VPS13D-211ENST00000543710 KIAA0556O60303 1618 aa9.17□□□□□ -0.94
VPS13D-211ENST00000543710 PPM1FP49593 454 aaPredicted RBP9.17□□□□□ -0.94
VPS13D-211ENST00000543710 CCDC83Q8IWF9 413 aa9.17□□□□□ -0.94
VPS13D-211ENST00000543710 NYXQ9GZU5 481 aa9.17□□□□□ -0.94
VPS13D-211ENST00000543710 RRP7AQ9Y3A4 280 aaKnown RBP9.17□□□□□ -0.94
VPS13D-211ENST00000543710 MAST1Q9Y2H9 1570 aa9.17□□□□□ -0.94
VPS13D-211ENST00000543710 H7C1D1 291 aa9.17□□□□□ -0.94
VPS13D-211ENST00000543710 MAP9Q49MG5 647 aa9.17□□□□□ -0.94
VPS13D-211ENST00000543710 CCDC152Q4G0S7 254 aa9.17□□□□□ -0.94
VPS13D-211ENST00000543710 AMOTQ4VCS5 1084 aa9.17□□□□□ -0.94
VPS13D-211ENST00000543710 TRAPPC3LQ5T215 181 aa9.17□□□□□ -0.94
VPS13D-211ENST00000543710 PRAM1Q96QH2 718 aa9.17□□□□□ -0.94
VPS13D-211ENST00000543710 CGNQ9P2M7 1197 aaKnown RBP9.17□□□□□ -0.94
VPS13D-211ENST00000543710 GJA3Q9Y6H8 435 aa9.17□□□□□ -0.94
VPS13D-211ENST00000543710 PES1O00541 588 aaKnown RBP9.17□□□□□ -0.94
VPS13D-211ENST00000543710 FGFR1OPO95684 399 aaKnown RBP9.17□□□□□ -0.94
VPS13D-211ENST00000543710 PDZRN3Q9UPQ7 1066 aa9.17□□□□□ -0.94
VPS13D-211ENST00000543710 MPRIPQ6WCQ1 1025 aa9.17□□□□□ -0.94
VPS13D-211ENST00000543710 PPP1R42Q7Z4L9 355 aa9.17□□□□□ -0.94
VPS13D-211ENST00000543710 ZSCAN12O43309 604 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 CHD1LQ86WJ1 897 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 TRIM22Q8IYM9 498 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 CRACR2BQ8N4Y2 399 aaPredicted RBP9.16□□□□□ -0.94
VPS13D-211ENST00000543710 FSD1Q9BTV5 496 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 TSPYL2Q9H2G4 693 aaPredicted RBP9.16□□□□□ -0.94
VPS13D-211ENST00000543710 DEF6Q9H4E7 631 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 CCDC174Q6PII3 467 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms