RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SMARCC1	Q92922	1105 aa	Predicted RBP	13.22	□□□□□ -0.29
CPSF7-221	ENST00000543545	CFAP44	Q96MT7	982 aa		13.22	□□□□□ -0.29
CPSF7-221	ENST00000543545	IFT57	Q9NWB7	429 aa		13.22	□□□□□ -0.29
CPSF7-221	ENST00000543545	ASAP1	Q9ULH1	1129 aa		13.22	□□□□□ -0.29
CPSF7-221	ENST00000543545	PTCD1	O75127	700 aa	Known RBP	13.21	□□□□□ -0.29
CPSF7-221	ENST00000543545	RBM42	Q9BTD8	480 aa	Known RBP	13.21	□□□□□ -0.29
CPSF7-221	ENST00000543545	MYH16	Q9H6N6	1097 aa		13.21	□□□□□ -0.29
CPSF7-221	ENST00000543545	ATG3	Q9NT62	314 aa		13.21	□□□□□ -0.29
CPSF7-221	ENST00000543545	PKD1L3	Q7Z443	1732 aa		13.21	□□□□□ -0.3
CPSF7-221	ENST00000543545	IL16	Q14005	1332 aa		13.2	□□□□□ -0.3
CPSF7-221	ENST00000543545	CHL1	O00533	1208 aa		13.2	□□□□□ -0.3
CPSF7-221	ENST00000543545	KCNQ3	O43525	872 aa		13.2	□□□□□ -0.3
CPSF7-221	ENST00000543545	ZNF790	Q6PG37	636 aa		13.2	□□□□□ -0.3
CPSF7-221	ENST00000543545	BABAM1	Q9NWV8	329 aa		13.2	□□□□□ -0.3
CPSF7-221	ENST00000543545	ZBED9	Q6R2W3	1325 aa		13.19	□□□□□ -0.3
CPSF7-221	ENST00000543545		E9PSI1	815 aa		13.19	□□□□□ -0.3
CPSF7-221	ENST00000543545	CCDC125	Q86Z20	511 aa		13.19	□□□□□ -0.3
CPSF7-221	ENST00000543545	TSR2	Q969E8	191 aa	Known RBP	13.19	□□□□□ -0.3
CPSF7-221	ENST00000543545	CDCA7L	Q96GN5	454 aa		13.19	□□□□□ -0.3
CPSF7-221	ENST00000543545	MBIP	Q9NS73	344 aa		13.19	□□□□□ -0.3
CPSF7-221	ENST00000543545	WNK3	Q9BYP7	1800 aa		13.18	□□□□□ -0.3
CPSF7-221	ENST00000543545	ZNF521	Q96K83	1311 aa		13.18	□□□□□ -0.3
CPSF7-221	ENST00000543545	BAG6	P46379	1132 aa		13.18	□□□□□ -0.3
CPSF7-221	ENST00000543545	FMNL2	Q96PY5	1086 aa		13.18	□□□□□ -0.3
CPSF7-221	ENST00000543545	ZNF853	P0CG23	659 aa		13.17	□□□□□ -0.3
CPSF7-221	ENST00000543545	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.17	□□□□□ -0.3
CPSF7-221	ENST00000543545	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.17	□□□□□ -0.3
CPSF7-221	ENST00000543545	PALLD	Q8WX93	1383 aa		13.17	□□□□□ -0.3
CPSF7-221	ENST00000543545	LOC102724428	A0A0B4J2F2	783 aa		13.16	□□□□□ -0.3
CPSF7-221	ENST00000543545	ATP6V1A	P38606	617 aa		13.16	□□□□□ -0.3
CPSF7-221	ENST00000543545	SIK1	P57059	783 aa		13.16	□□□□□ -0.3
CPSF7-221	ENST00000543545	EIF4A1	P60842	406 aa	Known RBP	13.16	□□□□□ -0.3
CPSF7-221	ENST00000543545	EN1	Q05925	392 aa	Predicted RBP	13.16	□□□□□ -0.3
CPSF7-221	ENST00000543545	SLFN5	Q08AF3	891 aa		13.16	□□□□□ -0.3
CPSF7-221	ENST00000543545	DEFB132	Q7Z7B7	95 aa		13.16	□□□□□ -0.3
CPSF7-221	ENST00000543545	ZNF496	Q96IT1	587 aa	Predicted RBP	13.16	□□□□□ -0.3
CPSF7-221	ENST00000543545	CCNL1	Q9UK58	526 aa	Predicted RBP	13.16	□□□□□ -0.3
CPSF7-221	ENST00000543545	ELL2	O00472	640 aa	Predicted RBP	13.15	□□□□□ -0.3
CPSF7-221	ENST00000543545	PLSCR1	O15162	318 aa		13.15	□□□□□ -0.3
CPSF7-221	ENST00000543545	KCNQ4	P56696	695 aa		13.15	□□□□□ -0.3
CPSF7-221	ENST00000543545	BRWD3	Q6RI45	1802 aa		13.15	□□□□□ -0.3
CPSF7-221	ENST00000543545	FANCI	Q9NVI1	1328 aa		13.14	□□□□□ -0.31
CPSF7-221	ENST00000543545	SHANK3	Q9BYB0	1731 aa		13.14	□□□□□ -0.31
CPSF7-221	ENST00000543545	SNRPA1	P09661	255 aa	Known RBP	13.14	□□□□□ -0.31
CPSF7-221	ENST00000543545	TXNRD1	Q16881	649 aa		13.14	□□□□□ -0.31
CPSF7-221	ENST00000543545	KAT6B	Q8WYB5	2073 aa		13.14	□□□□□ -0.31
CPSF7-221	ENST00000543545	MRC1	P22897	1456 aa		13.13	□□□□□ -0.31
CPSF7-221	ENST00000543545	EXOSC9	Q06265	439 aa	Known RBP	13.13	□□□□□ -0.31
CPSF7-221	ENST00000543545	EZH2	Q15910	746 aa	Known RBP	13.13	□□□□□ -0.31
CPSF7-221	ENST00000543545	KRT24	Q2M2I5	525 aa		13.13	□□□□□ -0.31
CPSF7-221	ENST00000543545	SLC27A3	Q5K4L6	730 aa		13.13	□□□□□ -0.31
CPSF7-221	ENST00000543545	DUSP27	Q5VZP5	1158 aa		13.13	□□□□□ -0.31
CPSF7-221	ENST00000543545	DNAJC10	Q8IXB1	793 aa		13.13	□□□□□ -0.31
CPSF7-221	ENST00000543545	GIGYF1	O75420	1035 aa	Predicted RBP	13.12	□□□□□ -0.31
CPSF7-221	ENST00000543545	STARD3NL	O95772	234 aa		13.12	□□□□□ -0.31
CPSF7-221	ENST00000543545	EIF2S2	P20042	333 aa	Known RBP	13.12	□□□□□ -0.31
CPSF7-221	ENST00000543545	VSIG10	Q8N0Z9	540 aa		13.12	□□□□□ -0.31
CPSF7-221	ENST00000543545	C8orf58	Q8NAV2	365 aa		13.12	□□□□□ -0.31
CPSF7-221	ENST00000543545	CAMKK2	Q96RR4	588 aa		13.12	□□□□□ -0.31
CPSF7-221	ENST00000543545	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.12	□□□□□ -0.31
CPSF7-221	ENST00000543545	HEG1	Q9ULI3	1381 aa		13.11	□□□□□ -0.31
CPSF7-221	ENST00000543545	PRAMEF22	A3QJZ6	481 aa		13.11	□□□□□ -0.31
CPSF7-221	ENST00000543545	HMGB2	P26583	209 aa	Known RBP	13.11	□□□□□ -0.31
CPSF7-221	ENST00000543545	PROM2	Q8N271	834 aa		13.11	□□□□□ -0.31
CPSF7-221	ENST00000543545	NECTIN2	Q92692	538 aa		13.11	□□□□□ -0.31
CPSF7-221	ENST00000543545	SLC4A9	Q96Q91	983 aa		13.11	□□□□□ -0.31
CPSF7-221	ENST00000543545	ITPK1	Q13572	414 aa		13.1	□□□□□ -0.31
CPSF7-221	ENST00000543545	TWISTNB	Q3B726	338 aa	Predicted RBP	13.1	□□□□□ -0.31
CPSF7-221	ENST00000543545	TSPYL6	Q8N831	410 aa		13.1	□□□□□ -0.31
CPSF7-221	ENST00000543545	LRRC4B	Q9NT99	713 aa		13.1	□□□□□ -0.31
CPSF7-221	ENST00000543545	USP16	Q9Y5T5	823 aa		13.1	□□□□□ -0.31
CPSF7-221	ENST00000543545	HDGFL1	Q5TGJ6	251 aa		13.09	□□□□□ -0.31
CPSF7-221	ENST00000543545	TRMT2A	Q8IZ69	625 aa	Known RBP	13.09	□□□□□ -0.31
CPSF7-221	ENST00000543545	DOT1L	Q8TEK3	1739 aa		13.09	□□□□□ -0.31
CPSF7-221	ENST00000543545	CHMP4A	Q9BY43	222 aa		13.09	□□□□□ -0.31
CPSF7-221	ENST00000543545	TOGARAM1	Q9Y4F4	1720 aa		13.09	□□□□□ -0.31
CPSF7-221	ENST00000543545	HOXB7	P09629	217 aa		13.08	□□□□□ -0.32
CPSF7-221	ENST00000543545	NPM2	Q86SE8	214 aa	Known RBP	13.08	□□□□□ -0.32
CPSF7-221	ENST00000543545	LINC00116	Q8NCU8	138 aa		13.08	□□□□□ -0.32
CPSF7-221	ENST00000543545	AK7	Q96M32	723 aa		13.08	□□□□□ -0.32
CPSF7-221	ENST00000543545	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.08	□□□□□ -0.32
CPSF7-221	ENST00000543545	NHS	Q6T4R5	1651 aa		13.08	□□□□□ -0.32
CPSF7-221	ENST00000543545	ADAMTS7	Q9UKP4	1686 aa		13.08	□□□□□ -0.32
CPSF7-221	ENST00000543545	SCN11A	Q9UI33	1791 aa		13.07	□□□□□ -0.32
CPSF7-221	ENST00000543545	TCERG1	O14776	1098 aa	Known RBP	13.07	□□□□□ -0.32
CPSF7-221	ENST00000543545	VAMP4	O75379	141 aa		13.07	□□□□□ -0.32
CPSF7-221	ENST00000543545	A1BG	P04217	495 aa		13.07	□□□□□ -0.32
CPSF7-221	ENST00000543545	CYP19A1	P11511	503 aa	Predicted RBP	13.07	□□□□□ -0.32
CPSF7-221	ENST00000543545	CANX	P27824	592 aa	Known RBP	13.07	□□□□□ -0.32
CPSF7-221	ENST00000543545	CRKL	P46109	303 aa	Known RBP	13.07	□□□□□ -0.32
CPSF7-221	ENST00000543545	NBPF14	Q5TI25	921 aa		13.07	□□□□□ -0.32
CPSF7-221	ENST00000543545	CCDC30	Q5VVM6	783 aa		13.07	□□□□□ -0.32
CPSF7-221	ENST00000543545	DLG5	Q8TDM6	1919 aa		13.07	□□□□□ -0.32
CPSF7-221	ENST00000543545	ARX	Q96QS3	562 aa		13.06	□□□□□ -0.32
CPSF7-221	ENST00000543545	STK31	Q9BXU1	1019 aa		13.06	□□□□□ -0.32
CPSF7-221	ENST00000543545	CCDC87	Q9NVE4	849 aa		13.06	□□□□□ -0.32
CPSF7-221	ENST00000543545	STK32B	Q9NY57	414 aa		13.06	□□□□□ -0.32
CPSF7-221	ENST00000543545	SOS1	Q07889	1333 aa	Predicted RBP	13.06	□□□□□ -0.32
CPSF7-221	ENST00000543545	GNPAT	O15228	680 aa		13.05	□□□□□ -0.32
CPSF7-221	ENST00000543545	MYL6B	P14649	208 aa		13.05	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms