RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SAFB2Q14151 953 aaKnown RBP eCLIP7.14□□□□□ -1.27
CLIP1-217ENST00000543205 GIGYF2Q6Y7W6 1299 aaKnown RBP7.14□□□□□ -1.27
CLIP1-217ENST00000543205 Q6ZNB5 142 aa7.14□□□□□ -1.27
CLIP1-217ENST00000543205 C19orf44Q9H6X5 657 aa7.14□□□□□ -1.27
CLIP1-217ENST00000543205 GPCPD1Q9NPB8 672 aa7.14□□□□□ -1.27
CLIP1-217ENST00000543205 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.13□□□□□ -1.27
CLIP1-217ENST00000543205 RCCD1A6NED2 376 aa7.13□□□□□ -1.27
CLIP1-217ENST00000543205 ATF3P18847 181 aa7.13□□□□□ -1.27
CLIP1-217ENST00000543205 SEPT9Q9UHD8 586 aaPredicted RBP7.13□□□□□ -1.27
CLIP1-217ENST00000543205 FAM135BQ49AJ0 1406 aa7.13□□□□□ -1.27
CLIP1-217ENST00000543205 TRPM1Q7Z4N2 1603 aa7.13□□□□□ -1.27
CLIP1-217ENST00000543205 DNAJB2P25686 324 aa7.13□□□□□ -1.27
CLIP1-217ENST00000543205 REPIN1Q9BWE0 567 aaKnown RBP7.13□□□□□ -1.27
CLIP1-217ENST00000543205 RALGAPBQ86X10 1494 aa7.12□□□□□ -1.27
CLIP1-217ENST00000543205 EIF3AQ14152 1382 aaKnown RBP7.12□□□□□ -1.27
CLIP1-217ENST00000543205 GPRASP1Q5JY77 1395 aa7.12□□□□□ -1.27
CLIP1-217ENST00000543205 PLEKHH1Q9ULM0 1364 aa7.12□□□□□ -1.27
CLIP1-217ENST00000543205 DLC1Q96QB1 1528 aa7.12□□□□□ -1.27
CLIP1-217ENST00000543205 IRF5Q13568 498 aa7.12□□□□□ -1.27
CLIP1-217ENST00000543205 NBPF3Q9H094 633 aa7.12□□□□□ -1.27
CLIP1-217ENST00000543205 KNDC1Q76NI1 1749 aa7.12□□□□□ -1.27
CLIP1-217ENST00000543205 FLIIQ13045 1269 aa7.11□□□□□ -1.27
CLIP1-217ENST00000543205 CENPJQ9HC77 1338 aaPredicted RBP7.11□□□□□ -1.27
CLIP1-217ENST00000543205 ADGRL3Q9HAR2 1447 aa7.11□□□□□ -1.27
CLIP1-217ENST00000543205 LAPTM4AQ15012 233 aa7.11□□□□□ -1.27
CLIP1-217ENST00000543205 RETREG2Q8NC44 543 aa7.11□□□□□ -1.27
CLIP1-217ENST00000543205 TMUB1Q9BVT8 246 aa7.11□□□□□ -1.27
CLIP1-217ENST00000543205 PLEKHG3A1L390 1219 aa7.1□□□□□ -1.27
CLIP1-217ENST00000543205 A6NJR5 290 aa7.1□□□□□ -1.27
CLIP1-217ENST00000543205 HIRIP3Q9BW71 556 aaPredicted RBP7.1□□□□□ -1.27
CLIP1-217ENST00000543205 SLAIN2Q9P270 581 aa7.1□□□□□ -1.27
CLIP1-217ENST00000543205 DCCP43146 1447 aa7.1□□□□□ -1.27
CLIP1-217ENST00000543205 MS4A1P11836 297 aa7.1□□□□□ -1.27
CLIP1-217ENST00000543205 TMEM134Q9H6X4 195 aa7.1□□□□□ -1.27
CLIP1-217ENST00000543205 XIRP1Q702N8 1843 aaKnown RBP7.09□□□□□ -1.27
CLIP1-217ENST00000543205 E9PSI1 815 aa7.09□□□□□ -1.27
CLIP1-217ENST00000543205 SSTR3P32745 418 aaPredicted RBP7.09□□□□□ -1.27
CLIP1-217ENST00000543205 FAM98CQ17RN3 349 aaKnown RBP7.09□□□□□ -1.27
CLIP1-217ENST00000543205 WASLO00401 505 aaPredicted RBP7.08□□□□□ -1.28
CLIP1-217ENST00000543205 ZEB1P37275 1124 aaPredicted RBP7.08□□□□□ -1.28
CLIP1-217ENST00000543205 MRPL50Q8N5N7 158 aaKnown RBP7.08□□□□□ -1.28
CLIP1-217ENST00000543205 DDRGK1Q96HY6 314 aa7.08□□□□□ -1.28
CLIP1-217ENST00000543205 FAM217BQ9NTX9 383 aaPredicted RBP7.08□□□□□ -1.28
CLIP1-217ENST00000543205 USP35Q9P2H5 1018 aa7.08□□□□□ -1.28
CLIP1-217ENST00000543205 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.08□□□□□ -1.28
CLIP1-217ENST00000543205 USP47Q96K76 1375 aa7.08□□□□□ -1.28
CLIP1-217ENST00000543205 ARHGEF28Q8N1W1 1705 aaKnown RBP7.08□□□□□ -1.28
CLIP1-217ENST00000543205 ST20-MTHFSA0A0A6YYL1 179 aa7.08□□□□□ -1.28
CLIP1-217ENST00000543205 BHMG1C9JSJ3 638 aaPredicted RBP7.08□□□□□ -1.28
CLIP1-217ENST00000543205 CDK19Q9BWU1 502 aa7.08□□□□□ -1.28
CLIP1-217ENST00000543205 NALCNQ8IZF0 1738 aa7.07□□□□□ -1.28
CLIP1-217ENST00000543205 EIF4G2P78344 907 aaKnown RBP eCLIP7.07□□□□□ -1.28
CLIP1-217ENST00000543205 SRPK2P78362 688 aaKnown RBP7.07□□□□□ -1.28
CLIP1-217ENST00000543205 SWT1Q5T5J6 900 aaKnown RBP7.07□□□□□ -1.28
CLIP1-217ENST00000543205 LAPTM4BQ86VI4 370 aa7.07□□□□□ -1.28
CLIP1-217ENST00000543205 DHX37Q8IY37 1157 aaKnown RBP7.07□□□□□ -1.28
CLIP1-217ENST00000543205 EVC2Q86UK5 1308 aa7.07□□□□□ -1.28
CLIP1-217ENST00000543205 DDX11L8A8MPP1 907 aa7.06□□□□□ -1.28
CLIP1-217ENST00000543205 ESCO1Q5FWF5 840 aa7.06□□□□□ -1.28
CLIP1-217ENST00000543205 SULF1Q8IWU6 871 aa7.06□□□□□ -1.28
CLIP1-217ENST00000543205 RGS17Q9UGC6 210 aaPredicted RBP7.06□□□□□ -1.28
CLIP1-217ENST00000543205 MST1RQ04912 1400 aa7.06□□□□□ -1.28
CLIP1-217ENST00000543205 CDC42BPGQ6DT37 1551 aa7.06□□□□□ -1.28
CLIP1-217ENST00000543205 C1orf167Q5SNV9 1468 aa7.06□□□□□ -1.28
CLIP1-217ENST00000543205 ADGRB2O60241 1585 aa7.05□□□□□ -1.28
CLIP1-217ENST00000543205 HSPA5P11021 654 aaKnown RBP7.05□□□□□ -1.28
CLIP1-217ENST00000543205 BRINP3Q76B58 766 aa7.05□□□□□ -1.28
CLIP1-217ENST00000543205 RDH13Q8NBN7 331 aa7.05□□□□□ -1.28
CLIP1-217ENST00000543205 ZFRQ96KR1 1074 aaKnown RBP7.05□□□□□ -1.28
CLIP1-217ENST00000543205 ORAI2Q96SN7 254 aa7.05□□□□□ -1.28
CLIP1-217ENST00000543205 QRICH2Q9H0J4 1663 aa7.05□□□□□ -1.28
CLIP1-217ENST00000543205 SBNO2Q9Y2G9 1366 aa7.05□□□□□ -1.28
CLIP1-217ENST00000543205 GOLGA8CPA6NN73 597 aa7.05□□□□□ -1.28
CLIP1-217ENST00000543205 RNF40O75150 1001 aa7.05□□□□□ -1.28
CLIP1-217ENST00000543205 SLC4A3P48751 1232 aa7.05□□□□□ -1.28
CLIP1-217ENST00000543205 TMF1P82094 1093 aa7.05□□□□□ -1.28
CLIP1-217ENST00000543205 SAMD7Q7Z3H4 446 aa7.05□□□□□ -1.28
CLIP1-217ENST00000543205 NUDT16Q96DE0 195 aaKnown RBP7.05□□□□□ -1.28
CLIP1-217ENST00000543205 TESK2Q96S53 571 aa7.05□□□□□ -1.28
CLIP1-217ENST00000543205 BEGAINQ9BUH8 593 aa7.05□□□□□ -1.28
CLIP1-217ENST00000543205 ANKARQ7Z5J8 1434 aa7.04□□□□□ -1.28
CLIP1-217ENST00000543205 PTPN5P54829 565 aa7.04□□□□□ -1.28
CLIP1-217ENST00000543205 PRR36Q9H6K5 1346 aa7.03□□□□□ -1.28
CLIP1-217ENST00000543205 CDCA8Q53HL2 280 aa7.03□□□□□ -1.28
CLIP1-217ENST00000543205 TULP4Q9NRJ4 1543 aa7.03□□□□□ -1.28
CLIP1-217ENST00000543205 FMN2Q9NZ56 1722 aa7.03□□□□□ -1.28
CLIP1-217ENST00000543205 CD46P15529 392 aa7.03□□□□□ -1.28
CLIP1-217ENST00000543205 SLF2Q8IX21 1173 aa7.03□□□□□ -1.28
CLIP1-217ENST00000543205 FAM177A1Q8N128 213 aaPredicted RBP7.03□□□□□ -1.28
CLIP1-217ENST00000543205 PMFBP1Q8TBY8 1022 aa7.03□□□□□ -1.28
CLIP1-217ENST00000543205 ROBO1Q9Y6N7 1651 aa7.03□□□□□ -1.28
CLIP1-217ENST00000543205 FOXO3O43524 673 aa7.02□□□□□ -1.29
CLIP1-217ENST00000543205 NGDNQ8NEJ9 315 aaKnown RBP7.02□□□□□ -1.29
CLIP1-217ENST00000543205 LRCH3Q96II8 777 aa7.02□□□□□ -1.29
CLIP1-217ENST00000543205 ATAD2Q6PL18 1390 aa7.02□□□□□ -1.29
CLIP1-217ENST00000543205 NPHP3Q7Z494 1330 aa7.02□□□□□ -1.29
CLIP1-217ENST00000543205 PSME1Q06323 249 aa7.01□□□□□ -1.29
CLIP1-217ENST00000543205 POTEAQ6S8J7 498 aa7.01□□□□□ -1.29
CLIP1-217ENST00000543205 ANKK1Q8NFD2 765 aa7.01□□□□□ -1.29
CLIP1-217ENST00000543205 TMC1Q8TDI8 760 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms