RNA–Protein interactions for RNA: ENST00000542786.1

LDB3-207, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 1,889 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-207ENST00000542786 MEIS3Q99687 375 aa17.82■□□□□ 0.44
LDB3-207ENST00000542786 CPDO75976 1380 aa17.81■□□□□ 0.44
LDB3-207ENST00000542786 PXDNLA1KZ92 1463 aa17.81■□□□□ 0.44
LDB3-207ENST00000542786 F6X3S4 739 aa17.81■□□□□ 0.44
LDB3-207ENST00000542786 FLIIQ13045 1269 aa17.81■□□□□ 0.44
LDB3-207ENST00000542786 BRINP3Q76B58 766 aa17.81■□□□□ 0.44
LDB3-207ENST00000542786 LNPKQ9C0E8 428 aa17.81■□□□□ 0.44
LDB3-207ENST00000542786 CEP85Q6P2H3 762 aa17.8■□□□□ 0.44
LDB3-207ENST00000542786 STK31Q9BXU1 1019 aa17.8■□□□□ 0.44
LDB3-207ENST00000542786 DCTPP1Q9H773 170 aa17.8■□□□□ 0.44
LDB3-207ENST00000542786 PLEKHG2Q9H7P9 1386 aa17.8■□□□□ 0.44
LDB3-207ENST00000542786 HEG1Q9ULI3 1381 aa17.8■□□□□ 0.44
LDB3-207ENST00000542786 HOXB7P09629 217 aa17.8■□□□□ 0.44
LDB3-207ENST00000542786 CCT4P50991 539 aaKnown RBP17.8■□□□□ 0.44
LDB3-207ENST00000542786 KCNQ3O43525 872 aa17.79■□□□□ 0.44
LDB3-207ENST00000542786 MPRIPQ6WCQ1 1025 aa17.79■□□□□ 0.44
LDB3-207ENST00000542786 RPAP2Q8IXW5 612 aaPredicted RBP17.79■□□□□ 0.44
LDB3-207ENST00000542786 MEGF6O75095 1541 aa17.78■□□□□ 0.44
LDB3-207ENST00000542786 ANKRD45Q5TZF3 282 aa17.78■□□□□ 0.44
LDB3-207ENST00000542786 CABLES1Q8TDN4 633 aa17.78■□□□□ 0.44
LDB3-207ENST00000542786 ZNF335Q9H4Z2 1342 aaPredicted RBP17.77■□□□□ 0.44
LDB3-207ENST00000542786 PKD1L3Q7Z443 1732 aa17.76■□□□□ 0.43
LDB3-207ENST00000542786 HDGFL1Q5TGJ6 251 aa17.76■□□□□ 0.43
LDB3-207ENST00000542786 TBC1D32Q96NH3 1257 aa17.76■□□□□ 0.43
LDB3-207ENST00000542786 SOS2Q07890 1332 aaPredicted RBP17.76■□□□□ 0.43
LDB3-207ENST00000542786 BMP2KLQ5H9B9 411 aa17.75■□□□□ 0.43
LDB3-207ENST00000542786 C1orf141Q5JVX7 400 aa17.75■□□□□ 0.43
LDB3-207ENST00000542786 NECTIN2Q92692 538 aa17.75■□□□□ 0.43
LDB3-207ENST00000542786 KDM6AO15550 1401 aaPredicted RBP17.75■□□□□ 0.43
LDB3-207ENST00000542786 TEFQ10587 303 aa17.75■□□□□ 0.43
LDB3-207ENST00000542786 SCN11AQ9UI33 1791 aa17.75■□□□□ 0.43
LDB3-207ENST00000542786 MRC1P22897 1456 aa17.74■□□□□ 0.43
LDB3-207ENST00000542786 ABCA3Q99758 1704 aa17.74■□□□□ 0.43
LDB3-207ENST00000542786 BTBD11A6QL63 1104 aa17.73■□□□□ 0.43
LDB3-207ENST00000542786 FKBP5Q13451 457 aaPredicted RBP17.73■□□□□ 0.43
LDB3-207ENST00000542786 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.73■□□□□ 0.43
LDB3-207ENST00000542786 SLC4A10Q6U841 1118 aa17.73■□□□□ 0.43
LDB3-207ENST00000542786 CHRNA2Q15822 529 aa17.72■□□□□ 0.43
LDB3-207ENST00000542786 PHAXQ9H814 394 aaKnown RBP17.72■□□□□ 0.43
LDB3-207ENST00000542786 NLRP2Q9NX02 1062 aa17.72■□□□□ 0.43
LDB3-207ENST00000542786 SLAIN2Q9P270 581 aa17.71■□□□□ 0.43
LDB3-207ENST00000542786 PLEKHM2Q8IWE5 1019 aa17.71■□□□□ 0.43
LDB3-207ENST00000542786 CHPF2Q9P2E5 772 aa17.71■□□□□ 0.43
LDB3-207ENST00000542786 NHSL1Q5SYE7 1610 aa17.7■□□□□ 0.42
LDB3-207ENST00000542786 PHKG2P15735 406 aa17.7■□□□□ 0.42
LDB3-207ENST00000542786 RAPGEF4Q8WZA2 1011 aa17.7■□□□□ 0.42
LDB3-207ENST00000542786 GIGYF1O75420 1035 aaPredicted RBP17.69■□□□□ 0.42
LDB3-207ENST00000542786 GNAI2P04899 355 aa17.69■□□□□ 0.42
LDB3-207ENST00000542786 SLC4A3P48751 1232 aa17.69■□□□□ 0.42
LDB3-207ENST00000542786 TATP17735 454 aaPredicted RBP17.69■□□□□ 0.42
LDB3-207ENST00000542786 USP44Q9H0E7 712 aa17.69■□□□□ 0.42
LDB3-207ENST00000542786 PARP4Q9UKK3 1724 aaKnown RBP17.69■□□□□ 0.42
LDB3-207ENST00000542786 ADCY9O60503 1353 aa17.68■□□□□ 0.42
LDB3-207ENST00000542786 GNAI3P08754 354 aa17.68■□□□□ 0.42
LDB3-207ENST00000542786 CHMP4AQ9BY43 222 aa17.68■□□□□ 0.42
LDB3-207ENST00000542786 EIF2S2P20042 333 aaKnown RBP17.67■□□□□ 0.42
LDB3-207ENST00000542786 GSPT1P15170 499 aaKnown RBP17.67■□□□□ 0.42
LDB3-207ENST00000542786 UPF2Q9HAU5 1272 aaKnown RBP17.67■□□□□ 0.42
LDB3-207ENST00000542786 SPG7Q9UQ90 795 aa17.67■□□□□ 0.42
LDB3-207ENST00000542786 C5P01031 1676 aa17.67■□□□□ 0.42
LDB3-207ENST00000542786 CYP27B1O15528 508 aa17.66■□□□□ 0.42
LDB3-207ENST00000542786 HMMRO75330 724 aa17.66■□□□□ 0.42
LDB3-207ENST00000542786 C16orf71Q8IYS4 520 aaPredicted RBP17.66■□□□□ 0.42
LDB3-207ENST00000542786 OTUD7AQ8TE49 926 aaPredicted RBP17.66■□□□□ 0.42
LDB3-207ENST00000542786 SLC52A2Q9HAB3 445 aa17.66■□□□□ 0.42
LDB3-207ENST00000542786 GLI3P10071 1580 aa17.66■□□□□ 0.42
LDB3-207ENST00000542786 COL5A2P05997 1499 aaPredicted RBP17.66■□□□□ 0.42
LDB3-207ENST00000542786 ATP8B2P98198 1209 aa17.65■□□□□ 0.42
LDB3-207ENST00000542786 BEND3Q5T5X7 828 aa17.65■□□□□ 0.42
LDB3-207ENST00000542786 PRAMEF22A3QJZ6 481 aa17.65■□□□□ 0.42
LDB3-207ENST00000542786 CSB-PGBD3P0DP91 1061 aa17.65■□□□□ 0.42
LDB3-207ENST00000542786 PROSER3Q2NL68 480 aa17.65■□□□□ 0.42
LDB3-207ENST00000542786 ANXA1P04083 346 aa17.64■□□□□ 0.41
LDB3-207ENST00000542786 MFAP1P55081 439 aaKnown RBP17.64■□□□□ 0.41
LDB3-207ENST00000542786 TTC22Q5TAA0 569 aa17.64■□□□□ 0.41
LDB3-207ENST00000542786 DBF4Q9UBU7 674 aaPredicted RBP17.64■□□□□ 0.41
LDB3-207ENST00000542786 WDR17Q8IZU2 1322 aa17.63■□□□□ 0.41
LDB3-207ENST00000542786 PNMA6EA0A0J9YXQ4 647 aa17.63■□□□□ 0.41
LDB3-207ENST00000542786 MYT1Q01538 1121 aa17.63■□□□□ 0.41
LDB3-207ENST00000542786 IFNL2Q8IZJ0 200 aa17.63■□□□□ 0.41
LDB3-207ENST00000542786 DNAAF4Q8WXU2 420 aa17.63■□□□□ 0.41
LDB3-207ENST00000542786 C22orf23Q9BZE7 217 aa17.63■□□□□ 0.41
LDB3-207ENST00000542786 LRRFIP2Q9Y608 721 aaKnown RBP17.63■□□□□ 0.41
LDB3-207ENST00000542786 SALL3Q9BXA9 1300 aa17.63■□□□□ 0.41
LDB3-207ENST00000542786 SMARCA5O60264 1052 aaPredicted RBP17.63■□□□□ 0.41
LDB3-207ENST00000542786 ZNF790Q6PG37 636 aa17.63■□□□□ 0.41
LDB3-207ENST00000542786 TBC1D9Q6ZT07 1266 aa17.63■□□□□ 0.41
LDB3-207ENST00000542786 SRCIN1Q9C0H9 1055 aa17.63■□□□□ 0.41
LDB3-207ENST00000542786 PI4KAP2A4QPH2 592 aa17.62■□□□□ 0.41
LDB3-207ENST00000542786 RBM25P49756 843 aaKnown RBP17.62■□□□□ 0.41
LDB3-207ENST00000542786 PDIA6Q15084 440 aa17.62■□□□□ 0.41
LDB3-207ENST00000542786 PI4KAP1Q8N8J0 262 aa17.62■□□□□ 0.41
LDB3-207ENST00000542786 DCAF5Q96JK2 942 aa17.62■□□□□ 0.41
LDB3-207ENST00000542786 IBTKQ9P2D0 1353 aaPredicted RBP17.62■□□□□ 0.41
LDB3-207ENST00000542786 PRDM11Q9NQV5 511 aa17.61■□□□□ 0.41
LDB3-207ENST00000542786 SHANK3Q9BYB0 1731 aa17.61■□□□□ 0.41
LDB3-207ENST00000542786 TUBGCP6Q96RT7 1819 aa17.61■□□□□ 0.41
LDB3-207ENST00000542786 SSH3Q8TE77 659 aa17.61■□□□□ 0.41
LDB3-207ENST00000542786 UBTFL1P0CB47 393 aaPredicted RBP17.6■□□□□ 0.41
LDB3-207ENST00000542786 SLC39A6Q13433 755 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms