RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 ABCB7O75027 752 aa15.2■□□□□ 0.02
YBX3-213ENST00000542641 PRIM1P49642 420 aaKnown RBP15.2■□□□□ 0.02
YBX3-213ENST00000542641 CABP4P57796 275 aa15.2■□□□□ 0.02
YBX3-213ENST00000542641 HNRNPUQ00839 825 aaKnown RBP eCLIP15.2■□□□□ 0.02
YBX3-213ENST00000542641 TEFQ10587 303 aa15.2■□□□□ 0.02
YBX3-213ENST00000542641 CCDC27Q2M243 656 aa15.2■□□□□ 0.02
YBX3-213ENST00000542641 THUMPD2Q9BTF0 503 aaKnown RBP15.2■□□□□ 0.02
YBX3-213ENST00000542641 WWC1Q8IX03 1113 aa15.19■□□□□ 0.02
YBX3-213ENST00000542641 NFATC2IPQ8NCF5 419 aa15.19■□□□□ 0.02
YBX3-213ENST00000542641 KCNQ2O43526 872 aa15.18■□□□□ 0.02
YBX3-213ENST00000542641 SLC52A2Q9HAB3 445 aa15.18■□□□□ 0.02
YBX3-213ENST00000542641 TMOD3Q9NYL9 352 aa15.18■□□□□ 0.02
YBX3-213ENST00000542641 CEMIPQ8WUJ3 1361 aa15.18■□□□□ 0.02
YBX3-213ENST00000542641 TRIM37O94972 964 aa15.17■□□□□ 0.02
YBX3-213ENST00000542641 CALD1Q05682 793 aaKnown RBP15.17■□□□□ 0.02
YBX3-213ENST00000542641 POLA2Q14181 598 aa15.17■□□□□ 0.02
YBX3-213ENST00000542641 BCL11BQ9C0K0 894 aaPredicted RBP15.17■□□□□ 0.02
YBX3-213ENST00000542641 TAF7Q15545 349 aaPredicted RBP15.16■□□□□ 0.02
YBX3-213ENST00000542641 ILDR2Q71H61 639 aa15.16■□□□□ 0.02
YBX3-213ENST00000542641 PIGBQ92521 554 aa15.16■□□□□ 0.02
YBX3-213ENST00000542641 DLG5Q8TDM6 1919 aa15.15■□□□□ 0.02
YBX3-213ENST00000542641 PTF1AQ7RTS3 328 aa15.15■□□□□ 0.02
YBX3-213ENST00000542641 WDR63Q8IWG1 891 aa15.15■□□□□ 0.02
YBX3-213ENST00000542641 EP400Q96L91 3159 aa15.14■□□□□ 0.01
YBX3-213ENST00000542641 BTBD11A6QL63 1104 aa15.14■□□□□ 0.01
YBX3-213ENST00000542641 YTHDC1Q96MU7 727 aaKnown RBP15.14■□□□□ 0.01
YBX3-213ENST00000542641 LAS1LQ9Y4W2 734 aaKnown RBP15.14■□□□□ 0.01
YBX3-213ENST00000542641 SCN11AQ9UI33 1791 aa15.13■□□□□ 0.01
YBX3-213ENST00000542641 ADAMTS7Q9UKP4 1686 aa15.13■□□□□ 0.01
YBX3-213ENST00000542641 MIS18AQ9NYP9 233 aa15.13■□□□□ 0.01
YBX3-213ENST00000542641 TOGARAM1Q9Y4F4 1720 aa15.13■□□□□ 0.01
YBX3-213ENST00000542641 DOT1LQ8TEK3 1739 aa15.12■□□□□ 0.01
YBX3-213ENST00000542641 ASAP1Q9ULH1 1129 aa15.12■□□□□ 0.01
YBX3-213ENST00000542641 MRC1P22897 1456 aa15.12■□□□□ 0.01
YBX3-213ENST00000542641 ZNF521Q96K83 1311 aa15.12■□□□□ 0.01
YBX3-213ENST00000542641 APBA3O96018 575 aa15.11■□□□□ 0.01
YBX3-213ENST00000542641 GNAI1P63096 354 aa15.11■□□□□ 0.01
YBX3-213ENST00000542641 GOLGA2Q08379 1002 aa15.11■□□□□ 0.01
YBX3-213ENST00000542641 SLC39A6Q13433 755 aa15.11■□□□□ 0.01
YBX3-213ENST00000542641 SF3B2Q13435 895 aaKnown RBP15.11■□□□□ 0.01
YBX3-213ENST00000542641 CFAP44Q96MT7 982 aa15.11■□□□□ 0.01
YBX3-213ENST00000542641 ATG3Q9NT62 314 aa15.11■□□□□ 0.01
YBX3-213ENST00000542641 IFT57Q9NWB7 429 aa15.11■□□□□ 0.01
YBX3-213ENST00000542641 BABAM1Q9NWV8 329 aa15.11■□□□□ 0.01
YBX3-213ENST00000542641 TSPYL4Q9UJ04 414 aa15.11■□□□□ 0.01
YBX3-213ENST00000542641 KAT6BQ8WYB5 2073 aa15.11■□□□□ 0.01
YBX3-213ENST00000542641 IL16Q14005 1332 aa15.11■□□□□ 0.01
YBX3-213ENST00000542641 NHSQ6T4R5 1651 aa15.1■□□□□ 0.01
YBX3-213ENST00000542641 CHL1O00533 1208 aa15.1■□□□□ 0.01
YBX3-213ENST00000542641 ZNF790Q6PG37 636 aa15.1■□□□□ 0.01
YBX3-213ENST00000542641 TTC5Q8N0Z6 440 aa15.1■□□□□ 0.01
YBX3-213ENST00000542641 SMARCC1Q92922 1105 aaPredicted RBP15.1■□□□□ 0.01
YBX3-213ENST00000542641 ZBED9Q6R2W3 1325 aa15.1■□□□□ 0.01
YBX3-213ENST00000542641 ZNF853P0CG23 659 aa15.09■□□□□ 0.01
YBX3-213ENST00000542641 CCDC125Q86Z20 511 aa15.09■□□□□ 0.01
YBX3-213ENST00000542641 ITGB4P16144 1822 aa15.08■□□□□ 0.01
YBX3-213ENST00000542641 SBF2Q86WG5 1849 aa15.08■□□□□ 0.01
YBX3-213ENST00000542641 KCNQ3O43525 872 aa15.08■□□□□ 0
YBX3-213ENST00000542641 PTCD1O75127 700 aaKnown RBP15.08■□□□□ 0
YBX3-213ENST00000542641 MYH16Q9H6N6 1097 aa15.08■□□□□ 0
YBX3-213ENST00000542641 MBIPQ9NS73 344 aa15.08■□□□□ 0
YBX3-213ENST00000542641 E9PSI1 815 aa15.07■□□□□ 0
YBX3-213ENST00000542641 CDCA7LQ96GN5 454 aa15.07■□□□□ 0
YBX3-213ENST00000542641 RBM42Q9BTD8 480 aaKnown RBP15.07■□□□□ 0
YBX3-213ENST00000542641 VIRMAQ69YN4 1812 aaKnown RBP15.07■□□□□ 0
YBX3-213ENST00000542641 PALLDQ8WX93 1383 aa15.07■□□□□ 0
YBX3-213ENST00000542641 PLSCR1O15162 318 aa15.06■□□□□ 0
YBX3-213ENST00000542641 UPF1Q92900 1129 aaKnown RBP eCLIP15.06■□□□□ 0
YBX3-213ENST00000542641 TSR2Q969E8 191 aaKnown RBP15.06■□□□□ 0
YBX3-213ENST00000542641 ZNF496Q96IT1 587 aaPredicted RBP15.06■□□□□ 0
YBX3-213ENST00000542641 BAG6P46379 1132 aa15.05■□□□□ -0
YBX3-213ENST00000542641 EIF4A1P60842 406 aaKnown RBP15.05■□□□□ -0
YBX3-213ENST00000542641 SLFN5Q08AF3 891 aa15.05■□□□□ -0
YBX3-213ENST00000542641 FMNL2Q96PY5 1086 aa15.05■□□□□ -0
YBX3-213ENST00000542641 SIPA1L3O60292 1781 aaPredicted RBP15.05■□□□□ -0
YBX3-213ENST00000542641 BTAF1O14981 1849 aa15.05■□□□□ -0
YBX3-213ENST00000542641 FANCIQ9NVI1 1328 aa15.04■□□□□ -0
YBX3-213ENST00000542641 LOC102724428A0A0B4J2F2 783 aa15.04■□□□□ -0
YBX3-213ENST00000542641 SIK1P57059 783 aa15.04■□□□□ -0
YBX3-213ENST00000542641 ATP6V1AP38606 617 aa15.03■□□□□ -0
YBX3-213ENST00000542641 EN1Q05925 392 aaPredicted RBP15.03■□□□□ -0
YBX3-213ENST00000542641 TXNRD1Q16881 649 aa15.02■□□□□ -0
YBX3-213ENST00000542641 DEFB132Q7Z7B7 95 aa15.02■□□□□ -0
YBX3-213ENST00000542641 VSIG10Q8N0Z9 540 aa15.02■□□□□ -0
YBX3-213ENST00000542641 CCNL1Q9UK58 526 aaPredicted RBP15.02■□□□□ -0
YBX3-213ENST00000542641 HEG1Q9ULI3 1381 aa15.01□□□□□ -0.01
YBX3-213ENST00000542641 SNRPA1P09661 255 aaKnown RBP15.01□□□□□ -0.01
YBX3-213ENST00000542641 KCNQ4P56696 695 aa15.01□□□□□ -0.01
YBX3-213ENST00000542641 EZH2Q15910 746 aaKnown RBP15.01□□□□□ -0.01
YBX3-213ENST00000542641 KRT24Q2M2I5 525 aa15.01□□□□□ -0.01
YBX3-213ENST00000542641 SLC27A3Q5K4L6 730 aa15.01□□□□□ -0.01
YBX3-213ENST00000542641 TRMT2AQ8IZ69 625 aaKnown RBP15.01□□□□□ -0.01
YBX3-213ENST00000542641 PROM2Q8N271 834 aa15.01□□□□□ -0.01
YBX3-213ENST00000542641 SLC4A9Q96Q91 983 aa15.01□□□□□ -0.01
YBX3-213ENST00000542641 CAMKK2Q96RR4 588 aa15.01□□□□□ -0.01
YBX3-213ENST00000542641 PAPPAQ13219 1627 aa15.01□□□□□ -0.01
YBX3-213ENST00000542641 KCPQ6ZWJ8 1503 aa15.01□□□□□ -0.01
YBX3-213ENST00000542641 TNS1Q9HBL0 1735 aaKnown RBP15□□□□□ -0.01
YBX3-213ENST00000542641 ELL2O00472 640 aaPredicted RBP15□□□□□ -0.01
YBX3-213ENST00000542641 GIGYF1O75420 1035 aaPredicted RBP15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms