RNA–Protein interactions for RNA: ENST00000542541.6

HOMER3-205, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,607 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-205ENST00000542541 IFT57Q9NWB7 429 aa30.12■■■□□ 2.41
HOMER3-205ENST00000542541 MRC1P22897 1456 aa30.11■■■□□ 2.41
HOMER3-205ENST00000542541 SBF2Q86WG5 1849 aa30.11■■■□□ 2.41
HOMER3-205ENST00000542541 BTBD11A6QL63 1104 aa30.11■■■□□ 2.41
HOMER3-205ENST00000542541 LAS1LQ9Y4W2 734 aaKnown RBP30.11■■■□□ 2.41
HOMER3-205ENST00000542541 PIGBQ92521 554 aa30.1■■■□□ 2.41
HOMER3-205ENST00000542541 KCNQ2O43526 872 aa30.09■■■□□ 2.41
HOMER3-205ENST00000542541 CHL1O00533 1208 aa30.08■■■□□ 2.41
HOMER3-205ENST00000542541 BCL11BQ9C0K0 894 aaPredicted RBP30.08■■■□□ 2.41
HOMER3-205ENST00000542541 ZNF853P0CG23 659 aa30.07■■■□□ 2.4
HOMER3-205ENST00000542541 MYH16Q9H6N6 1097 aa30.07■■■□□ 2.4
HOMER3-205ENST00000542541 E9PSI1 815 aa30.07■■■□□ 2.4
HOMER3-205ENST00000542541 TSPYL4Q9UJ04 414 aa30.07■■■□□ 2.4
HOMER3-205ENST00000542541 DOT1LQ8TEK3 1739 aa30.06■■■□□ 2.4
HOMER3-205ENST00000542541 TOGARAM1Q9Y4F4 1720 aa30.06■■■□□ 2.4
HOMER3-205ENST00000542541 KAT6BQ8WYB5 2073 aa30.05■■■□□ 2.4
HOMER3-205ENST00000542541 TRIM37O94972 964 aa30.04■■■□□ 2.4
HOMER3-205ENST00000542541 MIS18AQ9NYP9 233 aa30.04■■■□□ 2.4
HOMER3-205ENST00000542541 VIRMAQ69YN4 1812 aaKnown RBP30.04■■■□□ 2.4
HOMER3-205ENST00000542541 TTC5Q8N0Z6 440 aa30.04■■■□□ 2.4
HOMER3-205ENST00000542541 SLFN5Q08AF3 891 aa30.03■■■□□ 2.4
HOMER3-205ENST00000542541 ZNF790Q6PG37 636 aa30.03■■■□□ 2.4
HOMER3-205ENST00000542541 MBIPQ9NS73 344 aa30.02■■■□□ 2.4
HOMER3-205ENST00000542541 SMARCC1Q92922 1105 aaPredicted RBP30.01■■■□□ 2.39
HOMER3-205ENST00000542541 CDCA7LQ96GN5 454 aa30.01■■■□□ 2.39
HOMER3-205ENST00000542541 SPINK5Q9NQ38 1064 aaPredicted RBP30.01■■■□□ 2.39
HOMER3-205ENST00000542541 ITGB4P16144 1822 aa30■■■□□ 2.39
HOMER3-205ENST00000542541 TNS1Q9HBL0 1735 aaKnown RBP30■■■□□ 2.39
HOMER3-205ENST00000542541 NHSQ6T4R5 1651 aa30■■■□□ 2.39
HOMER3-205ENST00000542541 SLC39A6Q13433 755 aa30■■■□□ 2.39
HOMER3-205ENST00000542541 ATG3Q9NT62 314 aa30■■■□□ 2.39
HOMER3-205ENST00000542541 ASAP1Q9ULH1 1129 aa30■■■□□ 2.39
HOMER3-205ENST00000542541 SIPA1L3O60292 1781 aaPredicted RBP29.98■■■□□ 2.39
HOMER3-205ENST00000542541 PTF1AQ7RTS3 328 aa29.98■■■□□ 2.39
HOMER3-205ENST00000542541 TSR2Q969E8 191 aaKnown RBP29.97■■■□□ 2.39
HOMER3-205ENST00000542541 FANCIQ9NVI1 1328 aa29.97■■■□□ 2.39
HOMER3-205ENST00000542541 TRMT2AQ8IZ69 625 aaKnown RBP29.96■■■□□ 2.39
HOMER3-205ENST00000542541 KCNQ3O43525 872 aa29.95■■■□□ 2.38
HOMER3-205ENST00000542541 FMNL2Q96PY5 1086 aa29.95■■■□□ 2.38
HOMER3-205ENST00000542541 EIF4A1P60842 406 aaKnown RBP29.93■■■□□ 2.38
HOMER3-205ENST00000542541 SF3B2Q13435 895 aaKnown RBP29.93■■■□□ 2.38
HOMER3-205ENST00000542541 DUSP27Q5VZP5 1158 aa29.93■■■□□ 2.38
HOMER3-205ENST00000542541 PALLDQ8WX93 1383 aa29.92■■■□□ 2.38
HOMER3-205ENST00000542541 PTCD1O75127 700 aaKnown RBP29.92■■■□□ 2.38
HOMER3-205ENST00000542541 APBA3O96018 575 aa29.92■■■□□ 2.38
HOMER3-205ENST00000542541 CCDC125Q86Z20 511 aa29.92■■■□□ 2.38
HOMER3-205ENST00000542541 ZNF496Q96IT1 587 aaPredicted RBP29.92■■■□□ 2.38
HOMER3-205ENST00000542541 RBM42Q9BTD8 480 aaKnown RBP29.91■■■□□ 2.38
HOMER3-205ENST00000542541 KDM3BQ7LBC6 1761 aa29.89■■■□□ 2.38
HOMER3-205ENST00000542541 PLSCR1O15162 318 aa29.89■■■□□ 2.37
HOMER3-205ENST00000542541 VSIG10Q8N0Z9 540 aa29.89■■■□□ 2.37
HOMER3-205ENST00000542541 BTAF1O14981 1849 aa29.89■■■□□ 2.37
HOMER3-205ENST00000542541 EXOSC9Q06265 439 aaKnown RBP29.88■■■□□ 2.37
HOMER3-205ENST00000542541 UPF1Q92900 1129 aaKnown RBP eCLIP29.88■■■□□ 2.37
HOMER3-205ENST00000542541 SNRPA1P09661 255 aaKnown RBP29.87■■■□□ 2.37
HOMER3-205ENST00000542541 PAPPAQ13219 1627 aa29.87■■■□□ 2.37
HOMER3-205ENST00000542541 HEG1Q9ULI3 1381 aa29.87■■■□□ 2.37
HOMER3-205ENST00000542541 LOC102724428A0A0B4J2F2 783 aa29.86■■■□□ 2.37
HOMER3-205ENST00000542541 SIK1P57059 783 aa29.86■■■□□ 2.37
HOMER3-205ENST00000542541 SOS1Q07889 1333 aaPredicted RBP29.86■■■□□ 2.37
HOMER3-205ENST00000542541 TEX13AQ9BXU3 409 aaPredicted RBP29.85■■■□□ 2.37
HOMER3-205ENST00000542541 GIGYF1O75420 1035 aaPredicted RBP29.85■■■□□ 2.37
HOMER3-205ENST00000542541 HOXB7P09629 217 aa29.85■■■□□ 2.37
HOMER3-205ENST00000542541 C8orf58Q8NAV2 365 aa29.85■■■□□ 2.37
HOMER3-205ENST00000542541 CHMP4AQ9BY43 222 aa29.85■■■□□ 2.37
HOMER3-205ENST00000542541 KCPQ6ZWJ8 1503 aa29.84■■■□□ 2.37
HOMER3-205ENST00000542541 HMGB2P26583 209 aaKnown RBP29.84■■■□□ 2.37
HOMER3-205ENST00000542541 ATP6V1AP38606 617 aa29.83■■■□□ 2.37
HOMER3-205ENST00000542541 ELL2O00472 640 aaPredicted RBP29.82■■■□□ 2.36
HOMER3-205ENST00000542541 CT47B1P0C2W7 299 aaPredicted RBP29.82■■■□□ 2.36
HOMER3-205ENST00000542541 BAG6P46379 1132 aa29.82■■■□□ 2.36
HOMER3-205ENST00000542541 KRT24Q2M2I5 525 aa29.82■■■□□ 2.36
HOMER3-205ENST00000542541 TWISTNBQ3B726 338 aaPredicted RBP29.82■■■□□ 2.36
HOMER3-205ENST00000542541 UBR2Q8IWV8 1755 aa29.81■■■□□ 2.36
HOMER3-205ENST00000542541 SOCS7O14512 581 aa29.81■■■□□ 2.36
HOMER3-205ENST00000542541 SLC27A3Q5K4L6 730 aa29.81■■■□□ 2.36
HOMER3-205ENST00000542541 CCNL1Q9UK58 526 aaPredicted RBP29.81■■■□□ 2.36
HOMER3-205ENST00000542541 TSPYL6Q8N831 410 aa29.8■■■□□ 2.36
HOMER3-205ENST00000542541 SLC4A9Q96Q91 983 aa29.79■■■□□ 2.36
HOMER3-205ENST00000542541 RGPD3A6NKT7 1758 aaPredicted RBP29.79■■■□□ 2.36
HOMER3-205ENST00000542541 RGPD4Q7Z3J3 1758 aa29.79■■■□□ 2.36
HOMER3-205ENST00000542541 VAMP4O75379 141 aa29.78■■■□□ 2.36
HOMER3-205ENST00000542541 STARD3NLO95772 234 aa29.78■■■□□ 2.36
HOMER3-205ENST00000542541 TXNRD1Q16881 649 aa29.78■■■□□ 2.36
HOMER3-205ENST00000542541 ZNF428Q96B54 188 aa29.77■■■□□ 2.36
HOMER3-205ENST00000542541 DNAJC10Q8IXB1 793 aa29.76■■■□□ 2.35
HOMER3-205ENST00000542541 PRAMEF22A3QJZ6 481 aa29.75■■■□□ 2.35
HOMER3-205ENST00000542541 USP16Q9Y5T5 823 aa29.75■■■□□ 2.35
HOMER3-205ENST00000542541 EIF2S2P20042 333 aaKnown RBP29.74■■■□□ 2.35
HOMER3-205ENST00000542541 EN1Q05925 392 aaPredicted RBP29.74■■■□□ 2.35
HOMER3-205ENST00000542541 ITPK1Q13572 414 aa29.74■■■□□ 2.35
HOMER3-205ENST00000542541 HDGFL1Q5TGJ6 251 aa29.74■■■□□ 2.35
HOMER3-205ENST00000542541 CAMKK2Q96RR4 588 aa29.74■■■□□ 2.35
HOMER3-205ENST00000542541 LY75O60449 1722 aa29.73■■■□□ 2.35
HOMER3-205ENST00000542541 CCDC30Q5VVM6 783 aa29.73■■■□□ 2.35
HOMER3-205ENST00000542541 PROM2Q8N271 834 aa29.73■■■□□ 2.35
HOMER3-205ENST00000542541 ZNF831Q5JPB2 1677 aa29.72■■■□□ 2.35
HOMER3-205ENST00000542541 RREB1Q92766 1687 aa29.72■■■□□ 2.35
HOMER3-205ENST00000542541 CYP19A1P11511 503 aaPredicted RBP29.71■■■□□ 2.35
HOMER3-205ENST00000542541 KCNQ4P56696 695 aa29.71■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms