RNA–Protein interactions for RNA: ENST00000541990.5

THBS3-211, Transcript of thrombospondin 3, humanhuman

TSL 1 (best) BASIC

Gene THBS3, Length 2,928 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3-211ENST00000541990 PDCL3Q9H2J4 239 aa11.3□□□□□ -0.6
THBS3-211ENST00000541990 CDK12Q9NYV4 1490 aaPredicted RBP11.3□□□□□ -0.6
THBS3-211ENST00000541990 MPRIPQ6WCQ1 1025 aa11.29□□□□□ -0.6
THBS3-211ENST00000541990 CHD1LQ86WJ1 897 aa11.29□□□□□ -0.6
THBS3-211ENST00000541990 CIZ1Q9ULV3 898 aaPredicted RBP11.29□□□□□ -0.6
THBS3-211ENST00000541990 R3HCC1Q9Y3T6 440 aaKnown RBP11.29□□□□□ -0.6
THBS3-211ENST00000541990 DDX49Q9Y6V7 483 aaKnown RBP11.29□□□□□ -0.6
THBS3-211ENST00000541990 K7ELQ4 463 aaPredicted RBP11.29□□□□□ -0.6
THBS3-211ENST00000541990 TBC1D9Q6ZT07 1266 aa11.29□□□□□ -0.6
THBS3-211ENST00000541990 NPHP3Q7Z494 1330 aa11.29□□□□□ -0.6
THBS3-211ENST00000541990 BAG4O95429 457 aaKnown RBP11.29□□□□□ -0.6
THBS3-211ENST00000541990 FAM13BQ9NYF5 915 aa11.29□□□□□ -0.6
THBS3-211ENST00000541990 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.29□□□□□ -0.6
THBS3-211ENST00000541990 KIAA0232Q92628 1395 aa11.28□□□□□ -0.6
THBS3-211ENST00000541990 NUTM2BA6NNL0 878 aaPredicted RBP11.28□□□□□ -0.6
THBS3-211ENST00000541990 NUTM2EB1AL46 878 aaPredicted RBP11.28□□□□□ -0.6
THBS3-211ENST00000541990 OFD1O75665 1012 aa11.28□□□□□ -0.6
THBS3-211ENST00000541990 ANKRD45Q5TZF3 282 aa11.28□□□□□ -0.6
THBS3-211ENST00000541990 NUTM2AQ8IVF1 878 aaPredicted RBP11.28□□□□□ -0.6
THBS3-211ENST00000541990 ADAMTS2O95450 1211 aa11.28□□□□□ -0.6
THBS3-211ENST00000541990 ANKRD26Q9UPS8 1709 aa11.27□□□□□ -0.6
THBS3-211ENST00000541990 KCNQ3O43525 872 aa11.27□□□□□ -0.6
THBS3-211ENST00000541990 NCLP19338 710 aaKnown RBP11.27□□□□□ -0.6
THBS3-211ENST00000541990 SKOR2Q2VWA4 1001 aaPredicted RBP11.27□□□□□ -0.6
THBS3-211ENST00000541990 MCTP1Q6DN14 999 aa11.27□□□□□ -0.6
THBS3-211ENST00000541990 CAVIN1Q6NZI2 390 aaKnown RBP11.27□□□□□ -0.6
THBS3-211ENST00000541990 RBSNQ9H1K0 784 aa11.27□□□□□ -0.6
THBS3-211ENST00000541990 RBM27Q9P2N5 1060 aaKnown RBP11.27□□□□□ -0.6
THBS3-211ENST00000541990 AK9Q5TCS8 1911 aa11.27□□□□□ -0.61
THBS3-211ENST00000541990 IL17REQ8NFR9 667 aa11.27□□□□□ -0.61
THBS3-211ENST00000541990 PRDM11Q9NQV5 511 aa11.27□□□□□ -0.61
THBS3-211ENST00000541990 SPATA31A3Q5VYP0 1347 aa11.27□□□□□ -0.61
THBS3-211ENST00000541990 IGSF1Q8N6C5 1336 aa11.27□□□□□ -0.61
THBS3-211ENST00000541990 LTBP4Q8N2S1 1624 aa11.27□□□□□ -0.61
THBS3-211ENST00000541990 KCNH5Q8NCM2 988 aa11.26□□□□□ -0.61
THBS3-211ENST00000541990 NWD1Q149M9 1564 aa11.26□□□□□ -0.61
THBS3-211ENST00000541990 MSNP26038 577 aaKnown RBP11.26□□□□□ -0.61
THBS3-211ENST00000541990 KLHL40Q2TBA0 621 aa11.26□□□□□ -0.61
THBS3-211ENST00000541990 BMP2KLQ5H9B9 411 aa11.26□□□□□ -0.61
THBS3-211ENST00000541990 RTF1Q92541 710 aaKnown RBP11.25□□□□□ -0.61
THBS3-211ENST00000541990 PRDM4Q9UKN5 801 aa11.25□□□□□ -0.61
THBS3-211ENST00000541990 ZSCAN23Q3MJ62 389 aa11.25□□□□□ -0.61
THBS3-211ENST00000541990 PRIM1P49642 420 aaKnown RBP11.24□□□□□ -0.61
THBS3-211ENST00000541990 ANXA1P04083 346 aa11.24□□□□□ -0.61
THBS3-211ENST00000541990 ZNF530Q6P9A1 599 aaPredicted RBP11.24□□□□□ -0.61
THBS3-211ENST00000541990 SIRT2Q8IXJ6 389 aa11.24□□□□□ -0.61
THBS3-211ENST00000541990 JARID2Q92833 1246 aaPredicted RBP11.24□□□□□ -0.61
THBS3-211ENST00000541990 PRAMEF22A3QJZ6 481 aa11.23□□□□□ -0.61
THBS3-211ENST00000541990 GSPT1P15170 499 aaKnown RBP11.23□□□□□ -0.61
THBS3-211ENST00000541990 TSPYL4Q9UJ04 414 aa11.23□□□□□ -0.61
THBS3-211ENST00000541990 TWISTNBQ3B726 338 aaPredicted RBP11.23□□□□□ -0.61
THBS3-211ENST00000541990 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.23□□□□□ -0.61
THBS3-211ENST00000541990 LMBRD1Q9NUN5 540 aa11.23□□□□□ -0.61
THBS3-211ENST00000541990 NSFL1CQ9UNZ2 370 aaKnown RBP11.23□□□□□ -0.61
THBS3-211ENST00000541990 XIRP1Q702N8 1843 aaKnown RBP11.23□□□□□ -0.61
THBS3-211ENST00000541990 ERBB3P21860 1342 aa11.22□□□□□ -0.61
THBS3-211ENST00000541990 UQCRHLA0A096LP55 91 aa11.22□□□□□ -0.61
THBS3-211ENST00000541990 VAMP4O75379 141 aa11.22□□□□□ -0.61
THBS3-211ENST00000541990 UQCRHP07919 91 aa11.22□□□□□ -0.61
THBS3-211ENST00000541990 SLC39A6Q13433 755 aa11.22□□□□□ -0.61
THBS3-211ENST00000541990 LARP1Q6PKG0 1096 aaKnown RBP11.22□□□□□ -0.61
THBS3-211ENST00000541990 ZGPATQ8N5A5 531 aaKnown RBP11.22□□□□□ -0.61
THBS3-211ENST00000541990 MED1Q15648 1581 aaPredicted RBP11.22□□□□□ -0.61
THBS3-211ENST00000541990 PIP4K2AP48426 406 aaPredicted RBP11.22□□□□□ -0.61
THBS3-211ENST00000541990 TOM1L2Q6ZVM7 507 aa11.22□□□□□ -0.61
THBS3-211ENST00000541990 GPT2Q8TD30 523 aa11.22□□□□□ -0.61
THBS3-211ENST00000541990 MARF1Q9Y4F3 1742 aaKnown RBP11.22□□□□□ -0.61
THBS3-211ENST00000541990 CT47B1P0C2W7 299 aaPredicted RBP11.22□□□□□ -0.61
THBS3-211ENST00000541990 EIF2S2P20042 333 aaKnown RBP11.22□□□□□ -0.61
THBS3-211ENST00000541990 ZNF445P59923 1031 aa11.22□□□□□ -0.61
THBS3-211ENST00000541990 FOXD4L5Q5VV16 416 aaPredicted RBP11.22□□□□□ -0.61
THBS3-211ENST00000541990 FOXD4L4Q8WXT5 416 aaPredicted RBP11.22□□□□□ -0.61
THBS3-211ENST00000541990 CFAP44Q96MT7 982 aa11.22□□□□□ -0.61
THBS3-211ENST00000541990 A0A0G2JS52 829 aa11.21□□□□□ -0.61
THBS3-211ENST00000541990 GNAT3A8MTJ3 354 aa11.21□□□□□ -0.61
THBS3-211ENST00000541990 GOLGA6L22H0YM25 854 aa11.21□□□□□ -0.61
THBS3-211ENST00000541990 CALD1Q05682 793 aaKnown RBP11.21□□□□□ -0.61
THBS3-211ENST00000541990 DDX54Q8TDD1 881 aaKnown RBP11.21□□□□□ -0.61
THBS3-211ENST00000541990 ANP32BQ92688 251 aaKnown RBP11.21□□□□□ -0.61
THBS3-211ENST00000541990 PRDM10Q9NQV6 1147 aa11.21□□□□□ -0.61
THBS3-211ENST00000541990 NFAT5O94916 1531 aa11.21□□□□□ -0.61
THBS3-211ENST00000541990 UBAP1LF5GYI3 381 aa11.21□□□□□ -0.62
THBS3-211ENST00000541990 ZBTB7BO15156 539 aaPredicted RBP11.21□□□□□ -0.62
THBS3-211ENST00000541990 CLEC17AQ6ZS10 378 aa11.21□□□□□ -0.62
THBS3-211ENST00000541990 NOL7Q9UMY1 257 aaKnown RBP11.21□□□□□ -0.62
THBS3-211ENST00000541990 IBTKQ9P2D0 1353 aaPredicted RBP11.2□□□□□ -0.62
THBS3-211ENST00000541990 SOS2Q07890 1332 aaPredicted RBP11.2□□□□□ -0.62
THBS3-211ENST00000541990 KIF16BQ96L93 1317 aa11.2□□□□□ -0.62
THBS3-211ENST00000541990 PRPF40AO75400 957 aaKnown RBP11.2□□□□□ -0.62
THBS3-211ENST00000541990 ZNF853P0CG23 659 aa11.2□□□□□ -0.62
THBS3-211ENST00000541990 GNAI1P63096 354 aa11.2□□□□□ -0.62
THBS3-211ENST00000541990 G2E3Q7L622 706 aa11.2□□□□□ -0.62
THBS3-211ENST00000541990 PDLIM2Q96JY6 352 aa11.2□□□□□ -0.62
THBS3-211ENST00000541990 CYP2E1P05181 493 aaPredicted RBP11.2□□□□□ -0.62
THBS3-211ENST00000541990 EVA1CP58658 441 aa11.2□□□□□ -0.62
THBS3-211ENST00000541990 C16orf71Q8IYS4 520 aaPredicted RBP11.2□□□□□ -0.62
THBS3-211ENST00000541990 MPNDQ8N594 471 aa11.2□□□□□ -0.62
THBS3-211ENST00000541990 BTG4Q9NY30 223 aa11.2□□□□□ -0.62
THBS3-211ENST00000541990 TNS3Q68CZ2 1445 aa11.2□□□□□ -0.62
THBS3-211ENST00000541990 ARHGEF10O15013 1369 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms